Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2038 Trochodendron aralioides HOM05D010033 ORTHO05D011583 1.9e-188 662.5 374 100.0
TAR633G2168 Trochodendron aralioides HOM05D010033 ORTHO05D011583 9.1e-50 201.8 161 67.7
CSS0017916 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004794 2.3e-21 107.5 56 92.9
Dinv32114 Davidia involucrata HOM05D000278 ORTHO05D004794 2.3e-21 107.5 56 92.9
SalBow8G4259 Salvia bowleyana HOM05D000278 ORTHO05D004794 2.3e-21 107.5 70 78.6
SalBow8G4293 Salvia bowleyana HOM05D000278 ORTHO05D004794 2.3e-21 107.5 70 78.6
Actinidia22468 Actinidia chinensis HOM05D000278 ORTHO05D004794 3.0e-21 107.1 56 91.1
Cpa.g.sc103.86 Carica papaya HOM05D000278 ORTHO05D004794 3.0e-21 107.1 56 91.1
Prupe.6G154400 Prunus persica HOM05D000278 ORTHO05D004794 3.0e-21 107.1 56 91.1
AUR62013959 Chenopodium quinoa HOM05D000278 ORTHO05D004794 4.0e-21 106.7 63 81.0
AUR62019654 Chenopodium quinoa HOM05D000278 ORTHO05D004794 4.0e-21 106.7 63 81.0
DCAR_023796 Daucus carota HOM05D000278 ORTHO05D004794 4.0e-21 106.7 84 65.5
Cc11_g01300 Coffea canephora HOM05D000278 ORTHO05D004794 5.2e-21 106.3 56 91.1
DCAR_027486 Daucus carota HOM05D000278 ORTHO05D004794 5.2e-21 106.3 56 91.1
Lsat_1_v5_gn_5_64940 Lactuca sativa HOM05D000278 ORTHO05D004794 5.2e-21 106.3 56 91.1
Lj2A907T33 Lonicera japonica HOM05D000278 ORTHO05D004794 5.2e-21 106.3 56 91.1
MBI08_g21308_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004794 5.2e-21 106.3 56 91.1
Rhsim05G0064500 Rhododendron simsii HOM05D000278 ORTHO05D004794 6.8e-21 105.9 56 89.3
Sed0013756 Sechium edule HOM05D000278 ORTHO05D004794 6.8e-21 105.9 56 89.3
Haze_23638 Corylus avellana HOM05D000278 ORTHO05D004794 8.8e-21 105.5 84 64.3
Dinv32841 Davidia involucrata HOM05D000278 ORTHO05D004794 8.8e-21 105.5 56 91.1
Hma1.2p1_1466F.1_g285420 Hydrangea macrophylla HOM05D000278 ORTHO05D004794 8.8e-21 105.5 56 89.3
TAR625G0442 Trochodendron aralioides HOM05D000278 ORTHO05D004794 8.8e-21 105.5 56 91.1
AT3G11830 Arabidopsis thaliana HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 91.1
BcaB04g21115 Brassica carinata HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 91.1
BcaB06g25572 Brassica carinata HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 91.1
BcaC05g29321 Brassica carinata HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 91.1
BcaC09g48192 Brassica carinata HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 91.1
A05p37520 Brassica napus HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 91.1
C05p56080 Brassica napus HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 91.1
BolC1t05287H Brassica oleracea HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 91.1
BolC5t34275H Brassica oleracea HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 91.1
BraA01t04158Z Brassica rapa HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 91.1
BraA05t22550Z Brassica rapa HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 91.1
Carub.0003s1118 Capsella rubella HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 91.1
CARHR086380 Cardamine hirsuta HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 91.1
ECA238G3358 Erigeron canadensis HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 89.3
HanXRQChr12g0378161 Helianthus annuus HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 89.3
MD03G1164100 Malus domestica HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 89.3
Sp3g10060 Schrenkiella parvula HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 91.1
SGA_v2.0_scaffold169G38626 Striga asiatica HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 89.3
THA.LOC104816967 Tarenaya hassleriana HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 91.1
THA.LOC104826479 Tarenaya hassleriana HOM05D000278 ORTHO05D004794 1.2e-20 105.1 56 91.1
Atru.chr3.2916 Acer truncatum HOM05D000278 ORTHO05D004794 1.5e-20 104.8 56 91.1
CAN.G199.51 Capsicum annuum HOM05D000278 ORTHO05D004794 1.5e-20 104.8 56 91.1
Nn6g31931 Nelumbo nucifera HOM05D000278 ORTHO05D004794 1.5e-20 104.8 56 91.1
Peaxi162Scf00038g02039 Petunia axillaris HOM05D000278 ORTHO05D004794 1.5e-20 104.8 56 91.1
Peaxi162Scf00275g00008 Petunia axillaris HOM05D000278 ORTHO05D004794 1.5e-20 104.8 56 91.1
Potri.009G157400 Populus trichocarpa HOM05D000278 ORTHO05D004794 1.5e-20 104.8 56 91.1
QL01p020501 Quercus lobata HOM05D000278 ORTHO05D004794 1.5e-20 104.8 56 91.1
Solyc06g065520.3 Solanum lycopersicum HOM05D000278 ORTHO05D004794 1.5e-20 104.8 56 91.1
Sopen06g024160 Solanum pennellii HOM05D000278 ORTHO05D004794 1.5e-20 104.8 56 91.1
PGSC0003DMG400026124 Solanum tuberosum HOM05D000278 ORTHO05D004794 1.5e-20 104.8 56 91.1
C03p45300 Brassica napus HOM05D000278 ORTHO05D004794 2.0e-20 104.4 57 87.7
BolC3t16793H Brassica oleracea HOM05D000278 ORTHO05D004794 2.0e-20 104.4 57 87.7
Ciclev10014771m.g Citrus clementina HOM05D000278 ORTHO05D004794 2.0e-20 104.4 55 92.7
CsaV3_1G041990 Cucumis sativus L. HOM05D000278 ORTHO05D004794 2.0e-20 104.4 56 89.3
LjContig00564g0022207 Lotus japonicus HOM05D000278 ORTHO05D004794 2.0e-20 104.4 56 89.3
unitig_26.g9787 Utricularia gibba HOM05D000278 ORTHO05D004794 2.0e-20 104.4 56 89.3
Ah.04g164010 Amaranthus hybridus HOM05D000278 ORTHO05D004794 2.6e-20 104.0 56 89.3
AL3G23390 Arabidopsis lyrata HOM05D000278 ORTHO05D004794 2.6e-20 104.0 56 89.3
BcaB04g18663 Brassica carinata HOM05D000278 ORTHO05D004794 2.6e-20 104.0 56 89.3
BcaC01g04077 Brassica carinata HOM05D000278 ORTHO05D004794 2.6e-20 104.0 56 89.3
A03p37310 Brassica napus HOM05D000278 ORTHO05D004794 2.6e-20 104.0 56 89.3
BraA03t12891Z Brassica rapa HOM05D000278 ORTHO05D004794 2.6e-20 104.0 56 89.3
CSS0003568 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004794 2.6e-20 104.0 56 91.1
Thhalv10020422m.g Eutrema salsugineum HOM05D000278 ORTHO05D004794 2.6e-20 104.0 56 89.3
HanXRQChr15g0468701 Helianthus annuus HOM05D000278 ORTHO05D004794 2.6e-20 104.0 56 87.5
Sed0019588 Sechium edule HOM05D000278 ORTHO05D004794 2.6e-20 104.0 56 87.5
GSVIVG01002278001 Vitis vinifera HOM05D000278 ORTHO05D004794 2.6e-20 104.0 56 87.5
Actinidia06356 Actinidia chinensis HOM05D000278 ORTHO05D004794 3.4e-20 103.6 56 89.3
COL.COLO4_14011 Corchorus olitorius HOM05D000278 ORTHO05D004794 3.4e-20 103.6 56 89.3
Duzib147G1120 Durio zibethinus HOM05D000278 ORTHO05D004794 3.4e-20 103.6 56 89.3
Migut.A00285 Erythranthe guttata HOM05D000278 ORTHO05D004794 3.4e-20 103.6 56 87.5
Gohir.D12G001100 Gossypium hirsutum HOM05D000278 ORTHO05D004794 3.4e-20 103.6 56 89.3
Nitab4.5_0003976g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004794 3.4e-20 103.6 56 89.3
Nitab4.5_0005873g0040 Nicotiana tabacum HOM05D000278 ORTHO05D004794 3.4e-20 103.6 56 89.3
PGR119G0569 Punica granatum HOM05D000278 ORTHO05D004794 3.4e-20 103.6 56 89.3
Sabra04G0132500 Salix brachista HOM05D000278 ORTHO05D004794 3.4e-20 103.6 56 87.5
Aa31LG5G8530 Aethionema arabicum HOM05D000278 ORTHO05D004794 4.4e-20 103.2 56 87.5
CiPaw.14G092200 Carya illinoinensis HOM05D000278 ORTHO05D004794 4.4e-20 103.2 56 89.3
FvH4_3g27240 Fragaria vesca HOM05D000278 ORTHO05D004794 4.4e-20 103.2 56 87.5
FAN11G3227 Fragaria x ananassa HOM05D000278 ORTHO05D004794 4.4e-20 103.2 56 87.5
FAN16G1090 Fragaria x ananassa HOM05D000278 ORTHO05D004794 4.4e-20 103.2 56 87.5
FAN25G3467 Fragaria x ananassa HOM05D000278 ORTHO05D004794 4.4e-20 103.2 56 87.5
Os06g0687700 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004794 4.4e-20 103.2 56 89.3
PSO541G3784 Papaver somniferum HOM05D000278 ORTHO05D004794 4.4e-20 103.2 56 85.7
Aqoxy6G02051 Aquilegia oxysepala HOM05D000278 ORTHO05D004794 5.7e-20 102.8 56 87.5
CANSAT35G1978 Cannabis sativa HOM05D000278 ORTHO05D004794 5.7e-20 102.8 56 87.5
MELO3C015615.2 Cucumis melo HOM05D000278 ORTHO05D004794 5.7e-20 102.8 56 87.5
Migut.E01490 Erythranthe guttata HOM05D000278 ORTHO05D004794 5.7e-20 102.8 56 85.7
Eucgr.J00618 Eucalyptus grandis HOM05D000278 ORTHO05D004794 5.7e-20 102.8 56 85.7
FAN16G3564 Fragaria x ananassa HOM05D000278 ORTHO05D004794 5.7e-20 102.8 55 89.1
Manes.11G109600 Manihot esculenta HOM05D000278 ORTHO05D004794 5.7e-20 102.8 56 87.5
PSO675G7679 Papaver somniferum HOM05D000278 ORTHO05D004794 5.7e-20 102.8 56 83.9
Sc03g0004270 Simmondsia chinensis HOM05D000278 ORTHO05D004794 5.7e-20 102.8 55 90.9
MSTRG.11745 Avicennia marina HOM05D000278 ORTHO05D004794 7.5e-20 102.4 56 87.5
Lalb_Chr04g0249751 Lupinus albus HOM05D000278 ORTHO05D004794 7.5e-20 102.4 56 89.3
Potri.004G195300 Populus trichocarpa HOM05D000278 ORTHO05D004794 7.5e-20 102.4 56 87.5
Hund02336 Selenicereus undatus HOM05D000278 ORTHO05D004794 7.5e-20 102.4 56 89.3
TWI75G0864 Tripterygium wilfordii HOM05D000278 ORTHO05D004794 7.5e-20 102.4 56 85.7
unitig_749.g13821 Utricularia gibba HOM05D000278 ORTHO05D004794 7.5e-20 102.4 56 87.5
ATR0661G304 Amborella trichopoda HOM05D000278 ORTHO05D004794 9.8e-20 102.1 56 85.7
Duzib187G1092 Durio zibethinus HOM05D000278 ORTHO05D004794 9.8e-20 102.1 56 87.5
Gorai.008G000400 Gossypium raimondii HOM05D000278 ORTHO05D004794 9.8e-20 102.1 56 87.5
Oeu031561.1 Olea europaea HOM05D000278 ORTHO05D004794 9.8e-20 102.1 56 87.5
Sabra09G0123000 Salix brachista HOM05D000278 ORTHO05D004794 9.8e-20 102.1 56 87.5
SEGI_21483 Sequoiadendron giganteum HOM05D000278 ORTHO05D004794 9.8e-20 102.1 56 87.5
Zm00001eb207780 Zea mays HOM05D000278 ORTHO05D004794 9.8e-20 102.1 56 87.5
Gohir.A11G230300 Gossypium hirsutum HOM05D000278 ORTHO05D004794 1.3e-19 101.7 56 87.5
Phvul.008G208800 Phaseolus vulgaris HOM05D000278 ORTHO05D004794 1.3e-19 101.7 56 89.3
Thecc.01G126500 Theobroma cacao HOM05D000278 ORTHO05D004794 1.3e-19 101.7 56 87.5
TAR381G1107 Trochodendron aralioides HOM05D000278 ORTHO05D004794 1.3e-19 101.7 56 85.7
HPP92_007029 Vanilla planifolia HOM05D000278 ORTHO05D004794 1.3e-19 101.7 56 89.3
HPP92_007072 Vanilla planifolia HOM05D000278 ORTHO05D004794 1.3e-19 101.7 56 89.3
VMungo0647G0629 Vigna mungo HOM05D000278 ORTHO05D004794 1.3e-19 101.7 56 89.3
Glyma.14G043400 Glycine max HOM05D000278 ORTHO05D004794 1.7e-19 101.3 56 87.5
Lalb_Chr10g0105841 Lupinus albus HOM05D000278 ORTHO05D004794 1.7e-19 101.3 56 87.5
TPR.G11653 Trifolium pratense HOM05D000278 ORTHO05D004794 1.7e-19 101.3 56 87.5
TWI31G0144 Tripterygium wilfordii HOM05D000278 ORTHO05D004794 1.7e-19 101.3 56 87.5
Duzib264G0906 Durio zibethinus HOM05D000278 ORTHO05D004794 2.2e-19 100.9 56 85.7
Gohir.A12G001300 Gossypium hirsutum HOM05D000278 ORTHO05D004794 2.2e-19 100.9 56 85.7
RcHm_v2.0_Chr2g0128841 Rosa chinensis HOM05D000278 ORTHO05D004794 2.8e-19 100.5 56 85.7
Glyma.02G273200 Glycine max HOM05D000278 ORTHO05D004794 3.7e-19 100.1 56 87.5
Gohir.D11G229500 Gossypium hirsutum HOM05D000278 ORTHO05D004794 3.7e-19 100.1 56 85.7
Gorai.003G068300 Gossypium raimondii HOM05D000278 ORTHO05D004794 3.7e-19 100.1 56 85.7
ATR0099G017 Amborella trichopoda HOM05D000278 ORTHO05D004794 4.8e-19 99.8 56 83.9
arahy.Tifrunner.gnm1.ann1.H62ZJF Arachis hypogaea HOM05D000278 ORTHO05D004794 4.8e-19 99.8 56 87.5
EL10Ac4g08419 Beta vulgaris HOM05D000278 ORTHO05D004794 4.8e-19 99.8 56 85.7
Medtr5g087560 Medicago truncatula HOM05D000278 ORTHO05D004794 4.8e-19 99.8 56 85.7
Psat0s921g0240 Pisum sativum HOM05D000278 ORTHO05D004794 4.8e-19 99.8 56 85.7
CDE02G3738 Ceratophyllum demersum HOM05D000278 ORTHO05D004794 6.3e-19 99.4 56 85.7
CDE06G0515 Ceratophyllum demersum HOM05D000278 ORTHO05D004794 6.3e-19 99.4 56 85.7
SHI25343 Sapria himalayana HOM05D000278 ORTHO05D004794 1.1e-18 98.6 55 83.6
Pp3c15_8230 Physcomitrium patens HOM05D000278 ORTHO05D004794 2.4e-18 97.4 56 78.6
Mapoly0156s0015 Marchantia polymorpha HOM05D000278 ORTHO05D004794 3.1e-18 97.1 56 78.6
RcHm_v2.0_Chr5g0049871 Rosa chinensis HOM05D000278 ORTHO05D004794 3.1e-18 97.1 55 83.6
ATR0638G001 Amborella trichopoda HOM05D000278 ORTHO05D004794 9.1e-18 95.5 56 80.4
ATR0099G041 Amborella trichopoda HOM05D000278 ORTHO05D004794 1.2e-17 95.1 56 80.4
TAR628G1175 Trochodendron aralioides HOM05D000278 ORTHO05D004794 1.6e-17 94.7 56 85.7
SMO347G0357 Selaginella moellendorffii HOM05D000278 ORTHO05D004794 2.7e-17 94.0 56 76.8
ATR0099G056 Amborella trichopoda HOM05D000278 ORTHO05D004794 4.5e-17 93.2 56 78.6
ATR0408G001 Amborella trichopoda HOM05D000278 ORTHO05D004794 4.5e-17 93.2 56 78.6
AagrBONN_evm.TU.Sc2ySwM_117.2607 Anthoceros agrestis HOM05D000278 ORTHO05D004794 4.5e-17 93.2 56 75.0
ATR0099G014 Amborella trichopoda HOM05D000278 ORTHO05D004794 5.9e-17 92.8 55 80.0
Pp3c9_14010 Physcomitrium patens HOM05D000278 ORTHO05D004794 1.7e-16 91.3 56 75.0
CBR_g42151 Chara braunii HOM05D000278 ORTHO05D004794 2.3e-16 90.9 57 68.4
QL07p043888 Quercus lobata HOM05D010033 ORTHO05D011583 2.5e-15 87.4 160 36.9
Ciclev10017540m.g Citrus clementina HOM05D010033 ORTHO05D011583 3.3e-15 87.0 153 41.8
Cre01.g026550 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004794 4.2e-15 86.7 56 69.6
ClCG03G014240 Citrullus lanatus HOM05D000278 ORTHO05D004794 3.6e-14 83.6 56 78.6
MCO06G165 Micromonas commoda HOM05D000278 ORTHO05D004794 3.6e-14 83.6 56 64.3
Lj5g0008311 Lotus japonicus HOM05D010033 ORTHO05D011583 1.0e-13 82.0 154 35.7
TWI36G0490 Tripterygium wilfordii HOM05D026273 ORTHO05D011583 1.4e-13 81.6 157 36.3
Cfa017588 Carpinus fangiana HOM05D010033 ORTHO05D011583 3.0e-13 80.5 159 34.6
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 8.9e-13 79.0 159 34.6
Atru.chr13.539 Acer truncatum HOM05D010033 ORTHO05D011583 1.2e-12 78.6 154 38.3
Phvul.007G149500 Phaseolus vulgaris HOM05D010033 ORTHO05D011583 1.5e-12 78.2 158 29.7
Ciclev10017036m.g Citrus clementina HOM05D010033 ORTHO05D011583 5.7e-12 76.3 153 39.2
ATR1195G001 Amborella trichopoda HOM05D000278 ORTHO05D004794 9.8e-12 75.5 45 77.8
Aqoxy6G02048 Aquilegia oxysepala HOM05D000278 ORTHO05D004794 1.7e-11 74.7 45 82.2
Atru.chr3.1311 Acer truncatum HOM05D010033 ORTHO05D011583 2.8e-11 73.9 172 33.1
Atru.chr3.1312 Acer truncatum HOM05D010033 ORTHO05D011583 2.8e-11 73.9 155 36.8
Glyma.13G143800 Glycine max HOM05D010033 ORTHO05D011583 2.8e-11 73.9 158 30.4
Medtr1g063840 Medicago truncatula HOM05D010033 ORTHO05D011583 4.1e-10 70.1 157 33.8
Psat6g073280 Pisum sativum HOM05D010033 ORTHO05D011583 4.1e-10 70.1 157 33.8
PRCOL_00005497 Prasinoderma coloniale HOM05D000278 ORTHO05D004794 1.6e-09 68.2 56 57.1
TPR.G20201 Trifolium pratense HOM05D010033 ORTHO05D011583 1.6e-09 68.2 157 33.8
Prupe.6G233900 Prunus persica HOM05D010033 ORTHO05D011583 3.5e-09 67.0 159 35.2
Manes.13G072350 Manihot esculenta HOM05D026273 ORTHO05D011583 5.9e-09 66.2 156 37.2
Nn1g01969 Nelumbo nucifera HOM05D010033 ORTHO05D011583 5.9e-09 66.2 154 30.5
SGA_v2.0_scaffold4G02195 Striga asiatica HOM05D000278 ORTHO05D004794 7.3e-07 59.3 61 52.5
Cfa025880 Carpinus fangiana HOM05D000278 ORTHO05D004794 9.5e-07 58.9 60 55.0
Aa31sc2712G10 Aethionema arabicum HOM05D000278 ORTHO05D004794 1.2e-06 58.5 42 66.7
Ciclev10017978m.g Citrus clementina HOM05D010033 ORTHO05D011583 1.6e-06 58.2 119 36.1


User provided reference genes

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