Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 0.0e+00 1252.3 632 100.0
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 1.4e-188 663.7 634 55.8
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 3.6e-184 649.0 648 54.5
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 2.9e-181 639.4 678 53.2
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 9.2e-180 634.4 642 55.0
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 4.0e-167 592.4 635 53.7
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 9.9e-166 587.8 629 53.4
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 5.3e-159 565.5 710 47.9
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 9.9e-158 561.2 673 48.9
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 1.2e-155 554.3 634 49.5
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 1.8e-154 550.4 618 51.9
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 4.0e-151 539.3 704 44.5
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 1.8e-146 523.9 648 47.2
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 4.1e-143 512.7 647 46.5
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 9.0e-143 511.5 629 48.6
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 9.0e-143 511.5 637 46.9
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 1.7e-141 507.3 648 48.1
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.1e-140 504.6 660 45.3
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 4.3e-137 492.7 633 46.0
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 1.3e-136 491.1 653 45.2
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.3e-133 481.1 723 41.6
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 5.0e-133 479.2 682 43.4
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 5.0e-133 479.2 709 42.0
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 8.5e-133 478.4 634 45.1
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 9.4e-132 474.9 717 41.3
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 1.2e-131 474.6 647 44.8
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 2.0e-129 467.2 643 43.5
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 4.8e-128 462.6 637 43.0
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 8.2e-128 461.8 634 42.4
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 1.8e-127 460.7 646 41.5
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 3.4e-126 456.4 655 42.1
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 1.9e-124 450.7 663 42.7
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 2.5e-124 450.3 635 42.5
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 9.4e-124 448.4 630 43.3
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 1.2e-123 448.0 640 42.7
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 3.6e-123 446.4 748 40.2
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 1.0e-122 444.9 454 55.3
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 5.2e-122 442.6 638 42.8
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.5e-121 441.0 702 40.2
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 3.3e-121 439.9 658 41.0
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 4.4e-121 439.5 633 41.4
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 4.8e-120 436.0 810 36.8
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 1.6e-118 431.0 710 38.6
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.5e-118 429.9 632 42.4
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.7e-117 427.6 761 38.8
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.9e-117 426.8 636 42.1
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 1.1e-116 424.9 564 45.9
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 1.9e-116 424.1 475 49.5
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 2.8e-112 410.2 753 38.2
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 3.7e-112 409.8 659 41.4
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 2.7e-110 403.7 757 36.6
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 7.7e-110 402.1 689 38.6
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.3e-109 401.4 448 47.8
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 5.0e-109 399.4 818 34.8
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 1.1e-108 398.3 677 39.6
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.2e-108 396.7 709 37.2
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 7.2e-108 395.6 644 39.9
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 9.4e-108 395.2 582 41.4
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.4e-105 386.7 721 36.8
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 1.4e-103 381.3 569 38.3
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.4e-103 380.6 796 34.9
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 2.7e-102 377.1 607 40.9
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 3.5e-102 376.7 633 37.8
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 6.5e-101 372.5 562 40.6
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.5e-100 369.4 312 62.2
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.1e-99 367.5 312 62.5
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 7.5e-97 359.0 689 35.7
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 8.3e-96 355.5 807 32.2
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 9.2e-95 352.1 633 35.2
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.2e-95 352.1 314 58.3
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 2.7e-94 350.5 273 64.5
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 3.8e-93 346.7 635 36.9
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 8.6e-93 345.5 642 37.5
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 8.6e-93 345.5 322 57.1
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 1.5e-92 344.7 818 31.1
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 7.3e-92 342.4 633 35.7
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 9.5e-92 342.0 733 36.2
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.2e-91 341.7 359 52.4
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 2.8e-91 340.5 627 37.6
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 3.0e-90 337.0 625 37.8
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 6.8e-90 335.9 635 36.9
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 7.5e-89 332.4 636 36.8
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 9.8e-89 332.0 647 35.5
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 6.4e-88 329.3 635 36.5
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 1.1e-87 328.6 639 36.3
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 2.4e-87 327.4 676 35.8
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 5.4e-87 326.2 305 56.1
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 3.5e-86 323.6 673 35.2
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 3.0e-85 320.5 397 44.6
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 6.6e-85 319.3 754 34.0
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 1.1e-84 318.5 639 35.8
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 1.6e-83 314.7 644 33.9
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 8.9e-82 308.9 617 35.8
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 8.9e-82 308.9 313 53.4
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.4e-79 301.6 307 52.4
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.9e-79 301.2 267 60.3
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.9e-79 301.2 631 34.7
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 9.2e-79 298.9 708 32.8
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 9.2e-79 298.9 612 35.1
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 1.2e-78 298.5 306 53.6
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 4.6e-78 296.6 368 45.9
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 8.6e-77 292.4 283 55.8
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 1.1e-76 292.0 320 47.8
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.5e-76 291.6 303 51.8
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 4.3e-76 290.0 652 32.8
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 5.6e-76 289.7 664 32.8
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.5e-73 281.6 676 32.0
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 1.1e-71 275.4 309 46.3
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 1.4e-71 275.0 314 46.8
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 2.3e-69 267.7 307 47.6
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 2.5e-68 264.2 323 44.0
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 3.3e-68 263.8 287 49.1
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 1.5e-65 255.0 718 30.4
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 2.2e-64 251.1 269 50.9
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 3.8e-64 250.4 226 56.6
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 9.2e-63 245.7 630 30.3
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.1e-62 244.6 219 58.0
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 9.0e-58 229.2 312 42.3
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 1.2e-57 228.8 636 29.7
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.6e-57 227.6 631 30.0
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 2.5e-52 211.1 291 44.0
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.8e-50 204.9 188 58.0
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.8e-50 204.9 188 58.0
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 6.9e-50 203.0 274 42.0
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 9.3e-47 192.6 391 37.9
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 3.3e-44 184.1 183 50.8
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 6.2e-43 179.9 567 30.9
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 4.8e-35 153.7 311 32.5
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 6.2e-35 153.3 227 41.0
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 8.2e-35 152.9 507 28.8
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 5.8e-33 146.7 315 34.3
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 1.0e-32 146.0 228 40.8
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 2.9e-32 144.4 131 56.5
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 1.9e-31 141.7 247 36.8
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 1.5e-28 132.1 121 53.7
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 8.2e-27 126.3 234 35.0
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 1.5e-25 122.1 183 41.0
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 3.2e-23 114.4 327 32.4
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 7.4e-20 103.2 142 41.5
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 9.7e-20 102.8 187 36.4
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 2.8e-19 101.3 142 41.5
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 2.8e-19 101.3 132 43.9
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 3.7e-19 100.9 142 41.5
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 1.8e-18 98.6 132 41.7
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 1.0e-16 92.8 132 40.2
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 1.7e-16 92.0 142 43.0
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 1.1e-15 89.4 155 34.8
Lj8A15T43 Lonicera japonica HOM05D004076 ORTHO05D004606 2.6e-12 78.2 113 38.1
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 3.3e-12 77.8 217 30.9
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.8e-11 73.9 88 44.3
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 3.1e-10 71.2 85 49.4
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 5.3e-10 70.5 136 36.8
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 9.1e-10 69.7 80 45.0
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-07 62.8 44 61.4
BcaC07g42098 Brassica carinata HOM05D004076 ORTHO05D004606 2.5e-07 61.6 63 50.8
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 3.2e-07 61.2 122 33.6
SEGI_13457 Sequoiadendron giganteum HOM05D035915 ORTHO05D004606 2.1e-06 58.5 91 33.0


User provided reference genes

Program Settings