Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.1e-53 211.5 101 100.0
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 4.2e-26 121.3 99 63.6
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 2.1e-25 119.0 101 59.4
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 2.7e-25 118.6 101 61.4
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 3.6e-25 118.2 101 60.4
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 4.6e-25 117.9 101 59.4
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 4.6e-25 117.9 101 60.4
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.6e-25 117.9 101 59.4
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 4.6e-25 117.9 101 62.4
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 6.1e-25 117.5 101 60.4
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 6.1e-25 117.5 101 60.4
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 6.1e-25 117.5 101 60.4
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 7.9e-25 117.1 101 60.4
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 7.9e-25 117.1 101 59.4
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 1.0e-24 116.7 101 59.4
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 1.8e-24 115.9 101 58.4
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.8e-24 115.9 99 59.6
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.8e-24 115.9 99 59.6
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.8e-24 115.9 99 59.6
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 1.8e-24 115.9 101 59.4
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 1.8e-24 115.9 101 56.4
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 1.8e-24 115.9 99 59.6
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 2.3e-24 115.5 101 57.4
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.3e-24 115.5 99 57.6
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 2.3e-24 115.5 101 60.4
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.3e-24 115.5 101 59.4
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.3e-24 115.5 99 57.6
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 3.0e-24 115.2 101 58.4
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 3.9e-24 114.8 99 58.6
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.9e-24 114.8 99 58.6
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 3.9e-24 114.8 101 58.4
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 5.1e-24 114.4 99 57.6
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 5.1e-24 114.4 99 59.6
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.7e-24 114.0 99 58.6
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 1.1e-23 113.2 101 58.4
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 1.1e-23 113.2 101 58.4
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 1.5e-23 112.8 99 57.6
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 2.0e-23 112.5 102 60.8
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.0e-23 112.5 102 59.8
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 2.0e-23 112.5 102 59.8
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 2.0e-23 112.5 99 56.6
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.5e-23 112.1 101 58.4
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 2.5e-23 112.1 101 58.4
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 2.5e-23 112.1 102 59.8
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.5e-23 112.1 98 59.2
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 2.5e-23 112.1 96 61.5
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.3e-23 111.7 102 59.8
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.3e-23 111.7 102 59.8
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 3.3e-23 111.7 102 59.8
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 4.3e-23 111.3 99 57.6
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 4.3e-23 111.3 102 59.8
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 4.3e-23 111.3 101 58.4
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 5.7e-23 110.9 99 57.6
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 7.4e-23 110.5 102 56.9
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 7.4e-23 110.5 101 55.4
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 7.4e-23 110.5 102 56.9
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.4e-23 110.5 101 58.4
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 7.4e-23 110.5 101 58.4
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 9.7e-23 110.2 101 57.4
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 9.7e-23 110.2 101 55.4
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 9.7e-23 110.2 99 56.6
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.3e-22 109.8 102 57.8
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.3e-22 109.8 101 56.4
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.7e-22 109.4 99 58.6
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 1.7e-22 109.4 101 55.4
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.2e-22 109.0 101 57.4
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.8e-22 108.6 99 56.6
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.8e-22 108.6 99 56.6
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 2.8e-22 108.6 101 58.4
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 2.8e-22 108.6 101 55.4
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 2.8e-22 108.6 99 54.5
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 2.8e-22 108.6 102 55.9
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 2.8e-22 108.6 102 55.9
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 3.7e-22 108.2 99 56.6
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 4.8e-22 107.8 97 54.6
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 6.3e-22 107.5 99 56.6
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 6.3e-22 107.5 102 54.9
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 6.3e-22 107.5 101 54.5
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 8.2e-22 107.1 99 55.6
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 8.2e-22 107.1 99 55.6
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 8.2e-22 107.1 99 54.5
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 8.2e-22 107.1 102 55.9
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 8.2e-22 107.1 101 53.5
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 1.1e-21 106.7 103 53.4
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.4e-21 106.3 99 56.6
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 1.8e-21 105.9 99 55.6
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 2.4e-21 105.5 101 51.5
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 3.1e-21 105.1 97 55.7
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.1e-21 105.1 101 54.5
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 3.1e-21 105.1 101 55.4
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 4.1e-21 104.8 96 55.2
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 5.3e-21 104.4 102 53.9
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 6.9e-21 104.0 97 53.6
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 6.9e-21 104.0 99 54.5
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 6.9e-21 104.0 101 52.5
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 9.1e-21 103.6 101 54.5
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 9.1e-21 103.6 125 47.2
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 9.1e-21 103.6 58 77.6
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 9.1e-21 103.6 56 83.9
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.2e-20 103.2 59 78.0
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 1.5e-20 102.8 97 53.6
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.0e-20 102.4 101 54.5
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 2.6e-20 102.1 119 47.9
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 3.4e-20 101.7 95 53.7
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 5.9e-20 100.9 101 52.5
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 1.3e-19 99.8 101 52.5
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 1.3e-19 99.8 101 52.5
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 1.3e-19 99.8 101 52.5
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 1.3e-19 99.8 101 52.5
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 1.3e-19 99.8 99 54.5
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.3e-19 99.8 101 52.5
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 1.7e-19 99.4 57 82.5
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.7e-19 99.4 93 54.8
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 2.2e-19 99.0 58 75.9
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 2.2e-19 99.0 91 54.9
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.9e-19 98.6 56 82.1
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 2.9e-19 98.6 56 76.8
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.8e-19 98.2 56 76.8
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 3.8e-19 98.2 56 78.6
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 3.8e-19 98.2 95 52.6
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 3.8e-19 98.2 58 74.1
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 5.0e-19 97.8 101 50.5
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 5.0e-19 97.8 101 50.5
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 6.5e-19 97.4 88 53.4
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 8.5e-19 97.1 96 54.2
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 1.1e-18 96.7 102 52.9
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.4e-18 96.3 101 51.5
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 1.4e-18 96.3 62 72.6
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 4.2e-18 94.7 89 51.7
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 5.5e-18 94.4 56 76.8
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 5.5e-18 94.4 91 53.8
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 7.2e-18 94.0 91 54.9
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 9.4e-18 93.6 58 74.1
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 1.6e-17 92.8 94 53.2
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 1.6e-17 92.8 101 47.5
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 2.1e-17 92.4 94 53.2
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 2.1e-17 92.4 94 53.2
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 2.1e-17 92.4 94 53.2
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 2.1e-17 92.4 94 53.2
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 2.1e-17 92.4 128 43.0
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 2.1e-17 92.4 94 53.2
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 2.7e-17 92.0 94 52.1
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 2.7e-17 92.0 94 51.1
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 3.6e-17 91.7 90 54.4
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 3.6e-17 91.7 90 54.4
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 3.6e-17 91.7 90 54.4
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 3.6e-17 91.7 90 54.4
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 3.6e-17 91.7 90 54.4
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 3.6e-17 91.7 90 54.4
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 3.6e-17 91.7 101 49.5
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 6.1e-17 90.9 89 51.7
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 7.9e-17 90.5 56 73.2
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 1.0e-16 90.1 93 51.6
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.8e-16 89.4 101 45.5
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 3.9e-16 88.2 56 69.6
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 6.7e-16 87.4 93 50.5
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 6.7e-16 87.4 56 67.9
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 8.8e-16 87.0 101 48.5
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 8.8e-16 87.0 56 71.4
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 8.8e-16 87.0 69 59.4
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.5e-15 86.3 56 69.6
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 2.0e-15 85.9 86 48.8
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.7e-15 84.3 61 63.9
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 4.8e-14 81.3 49 73.5
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 6.3e-14 80.9 100 46.0
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 6.3e-14 80.9 56 58.9
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 1.1e-13 80.1 87 47.1
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 1.8e-13 79.3 104 43.3
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 3.1e-13 78.6 92 46.7
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 7.0e-13 77.4 40 85.0
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.0e-11 73.6 61 60.7
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.0e-11 73.6 97 39.2
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.2e-11 72.4 58 58.6
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 2.9e-11 72.0 92 40.2
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 1.5e-10 69.7 41 75.6
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 2.5e-10 68.9 38 81.6
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 1.2e-09 66.6 37 75.7
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 2.1e-09 65.9 59 47.5
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 3.6e-09 65.1 91 39.6
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.0e-08 62.0 80 46.2
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 7.5e-07 57.4 40 62.5
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 2.8e-06 55.5 62 50.0


User provided reference genes

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