Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 6.6e-82 307.4 160 100.0
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.7e-34 149.8 95 89.5
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 1.6e-32 143.3 93 83.9
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 2.4e-31 139.4 85 88.2
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 9.0e-31 137.5 85 87.1
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.5e-30 136.7 85 87.1
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 2.0e-30 136.3 94 85.1
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.7e-29 133.3 85 84.7
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 1.7e-29 133.3 86 84.9
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 4.9e-29 131.7 86 81.4
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 8.4e-29 131.0 89 79.8
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 1.1e-28 130.6 88 81.8
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 1.1e-28 130.6 86 81.4
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 3.2e-28 129.0 84 82.1
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 4.2e-28 128.6 85 81.2
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 5.4e-28 128.3 88 78.4
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 1.2e-27 127.1 91 76.9
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 2.1e-27 126.3 87 78.2
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-27 126.3 84 78.6
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 2.7e-27 125.9 85 78.8
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 3.5e-27 125.6 86 81.4
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 4.6e-27 125.2 85 78.8
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 6.0e-27 124.8 88 76.1
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 6.0e-27 124.8 88 76.1
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 7.9e-27 124.4 87 75.9
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 7.9e-27 124.4 88 73.9
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 7.9e-27 124.4 83 78.3
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 7.9e-27 124.4 85 77.6
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 7.9e-27 124.4 85 77.6
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 1.0e-26 124.0 83 78.3
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 1.3e-26 123.6 83 80.7
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 1.3e-26 123.6 83 80.7
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 1.8e-26 123.2 88 72.7
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 1.8e-26 123.2 85 75.3
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 3.0e-26 122.5 84 79.8
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 3.0e-26 122.5 84 79.8
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 3.0e-26 122.5 84 79.8
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 3.0e-26 122.5 83 77.1
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 3.9e-26 122.1 84 76.2
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 3.9e-26 122.1 85 77.6
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 3.9e-26 122.1 85 78.8
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 3.9e-26 122.1 89 73.0
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 5.1e-26 121.7 87 73.6
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 6.7e-26 121.3 83 75.9
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 6.7e-26 121.3 88 72.7
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 6.7e-26 121.3 89 76.4
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 6.7e-26 121.3 88 71.6
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 6.7e-26 121.3 92 73.9
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 8.7e-26 120.9 82 76.8
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.1e-25 120.6 83 75.9
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 1.1e-25 120.6 79 77.2
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.1e-25 120.6 84 75.0
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 1.1e-25 120.6 87 72.4
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.5e-25 120.2 83 75.9
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 2.5e-25 119.4 78 78.2
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 2.5e-25 119.4 78 78.2
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 2.5e-25 119.4 83 78.3
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 3.3e-25 119.0 88 70.5
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 3.3e-25 119.0 74 81.1
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 3.3e-25 119.0 89 71.9
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 4.3e-25 118.6 77 77.9
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 4.3e-25 118.6 85 77.6
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 4.3e-25 118.6 86 75.6
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 4.3e-25 118.6 85 76.5
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 4.3e-25 118.6 84 75.0
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 5.6e-25 118.2 86 74.4
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 5.6e-25 118.2 82 78.0
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 5.6e-25 118.2 86 73.3
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 7.4e-25 117.9 85 74.1
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 7.4e-25 117.9 88 69.3
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 7.4e-25 117.9 88 69.3
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 7.4e-25 117.9 88 69.3
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.3e-24 117.1 73 80.8
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 1.6e-24 116.7 87 71.3
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 1.6e-24 116.7 86 70.9
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.6e-24 116.7 86 70.9
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.6e-24 116.7 86 70.9
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 1.6e-24 116.7 88 70.5
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.6e-24 116.7 88 70.5
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 2.1e-24 116.3 88 69.3
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 2.1e-24 116.3 88 69.3
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 2.8e-24 115.9 86 73.3
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 2.8e-24 115.9 83 74.7
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 3.7e-24 115.5 93 69.9
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 4.8e-24 115.2 92 67.4
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 4.8e-24 115.2 79 74.7
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 6.2e-24 114.8 88 67.0
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 8.1e-24 114.4 83 73.5
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 1.1e-23 114.0 88 70.5
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 1.1e-23 114.0 90 70.0
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 3.1e-23 112.5 73 82.2
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 3.1e-23 112.5 74 77.0
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 3.1e-23 112.5 74 77.0
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.1e-23 112.5 89 73.0
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.1e-23 112.5 89 73.0
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 3.1e-23 112.5 83 71.1
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 3.1e-23 112.5 92 68.5
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 3.1e-23 112.5 92 68.5
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 3.1e-23 112.5 84 73.8
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 4.0e-23 112.1 74 77.0
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 4.0e-23 112.1 90 68.9
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.2e-22 110.5 92 66.3
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.5e-22 110.2 69 79.7
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 1.5e-22 110.2 89 65.2
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 1.5e-22 110.2 89 65.2
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.0e-22 109.8 69 79.7
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 2.0e-22 109.8 84 71.4
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 2.6e-22 109.4 68 80.9
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.6e-22 109.4 68 80.9
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.6e-22 109.4 68 80.9
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.6e-22 109.4 68 80.9
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.6e-22 109.4 68 80.9
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 2.6e-22 109.4 68 80.9
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 2.6e-22 109.4 89 65.2
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 9.9e-22 107.5 93 67.7
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 9.9e-22 107.5 88 65.9
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 1.3e-21 107.1 77 70.1
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 2.2e-21 106.3 93 64.5
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 2.9e-21 105.9 69 75.4
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 1.4e-20 103.6 79 73.4
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 2.5e-20 102.8 88 68.2
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 3.2e-20 102.4 81 69.1
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 4.6e-19 98.6 95 56.8
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.0e-18 97.4 80 68.8
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.9e-17 93.2 65 73.8
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 1.1e-15 87.4 92 58.7
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 1.5e-14 83.6 75 58.7
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 5.8e-14 81.6 71 60.6
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 6.5e-13 78.2 71 59.2
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 4.3e-09 65.5 37 83.8
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 1.3e-08 63.9 46 73.9
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 1.6e-08 63.5 56 64.3
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.2e-08 63.2 39 74.4
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.8e-08 62.8 39 76.9
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 2.8e-08 62.8 66 56.1
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 3.7e-08 62.4 45 64.4
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 4.1e-07 58.9 52 63.5
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 5.3e-07 58.5 36 80.6
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 9.0e-07 57.8 61 57.4
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.5e-06 57.0 38 73.7
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 3.4e-06 55.8 38 68.4
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 4.5e-06 55.5 39 66.7
arahy.Tifrunner.gnm1.ann1.PK2YC0 Arachis hypogaea HOM05D002013 ORTHO05D021515 4.5e-06 55.5 48 60.4
RcHm_v2.0_Chr7g0211671 Rosa chinensis HOM05D003587 ORTHO05D004139 1.0e-05 54.3 38 68.4


User provided reference genes

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