Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1642 Trochodendron aralioides HOM05D005047 ORTHO05D006540 2.4e-116 422.2 209 100.0
GSVIVG01029046001 Vitis vinifera HOM05D005047 ORTHO05D006540 3.6e-96 355.1 209 86.1
Haze_11554 Corylus avellana HOM05D005047 ORTHO05D006540 1.4e-95 353.2 207 86.0
CSS0002501 Camellia sinensis var. sinensis HOM05D005047 ORTHO05D006540 1.8e-95 352.8 209 83.3
Dinv38281 Davidia involucrata HOM05D005047 ORTHO05D006540 3.3e-94 348.6 209 84.2
Cc03_g07220 Coffea canephora HOM05D005047 ORTHO05D006540 9.7e-94 347.1 208 82.2
TWI73G0442 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 9.7e-94 347.1 207 84.5
Ciclev10005905m.g Citrus clementina HOM05D005047 ORTHO05D006540 1.7e-93 346.3 205 84.4
CANSAT78G0753 Cannabis sativa HOM05D005047 ORTHO05D006540 2.8e-93 345.5 198 86.4
CANSAT78G2209 Cannabis sativa HOM05D005047 ORTHO05D006540 2.8e-93 345.5 198 86.4
Psat6g048720 Pisum sativum HOM05D005047 ORTHO05D006540 3.7e-93 345.1 204 84.8
Nitab4.5_0010267g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 8.3e-93 344.0 206 84.5
PGR142G1511 Punica granatum HOM05D005047 ORTHO05D006540 1.1e-92 343.6 205 84.4
Medtr1g047390 Medicago truncatula HOM05D005047 ORTHO05D006540 1.4e-92 343.2 202 84.7
CiPaw.01G126600 Carya illinoinensis HOM05D005047 ORTHO05D006540 3.1e-92 342.0 206 83.0
Ca_11862_v3 Cicer arietinum L. HOM05D005047 ORTHO05D006540 3.1e-92 342.0 202 85.1
Potri.001G052400 Populus trichocarpa HOM05D005047 ORTHO05D006540 7.0e-92 340.9 200 85.5
Sopen09g034350 Solanum pennellii HOM05D005047 ORTHO05D006540 7.0e-92 340.9 206 82.0
RcHm_v2.0_Chr4g0396911 Rosa chinensis HOM05D005047 ORTHO05D006540 9.1e-92 340.5 205 82.4
PGSC0003DMG400029615 Solanum tuberosum HOM05D005047 ORTHO05D006540 1.2e-91 340.1 206 82.5
Glyma.10G125100 Glycine max HOM05D005047 ORTHO05D006540 2.0e-91 339.3 197 85.3
Glyma.20G077400 Glycine max HOM05D005047 ORTHO05D006540 2.0e-91 339.3 197 84.8
Thecc.04G211900 Theobroma cacao HOM05D005047 ORTHO05D006540 3.5e-91 338.6 199 84.4
BraA04t16537Z Brassica rapa HOM05D005047 ORTHO05D006540 5.9e-91 337.8 204 80.4
Lalb_Chr01g0010841 Lupinus albus HOM05D005047 ORTHO05D006540 5.9e-91 337.8 202 85.1
PSO782G5131 Papaver somniferum HOM05D005047 ORTHO05D006540 5.9e-91 337.8 207 82.1
Phvul.007G236950 Phaseolus vulgaris HOM05D005047 ORTHO05D006540 5.9e-91 337.8 197 84.8
Solyc09g091420.4 Solanum lycopersicum HOM05D005047 ORTHO05D006540 5.9e-91 337.8 206 81.6
Cpa.g.sc59.91 Carica papaya HOM05D005047 ORTHO05D006540 7.7e-91 337.4 207 82.1
HanXRQChr01g0022691 Helianthus annuus HOM05D005047 ORTHO05D006540 7.7e-91 337.4 203 82.8
Migut.N00337 Erythranthe guttata HOM05D005047 ORTHO05D006540 1.0e-90 337.0 203 81.3
Gorai.006G219600 Gossypium raimondii HOM05D005047 ORTHO05D006540 1.3e-90 336.7 202 82.7
Lj6g0004838 Lotus japonicus HOM05D005047 ORTHO05D006540 1.3e-90 336.7 200 84.5
C04p42210 Brassica napus HOM05D005047 ORTHO05D006540 1.7e-90 336.3 203 80.3
PSO478G4795 Papaver somniferum HOM05D005047 ORTHO05D006540 2.2e-90 335.9 207 82.1
Eucgr.H00094 Eucalyptus grandis HOM05D005047 ORTHO05D006540 2.9e-90 335.5 205 82.9
COL.COLO4_34082 Corchorus olitorius HOM05D005047 ORTHO05D006540 3.8e-90 335.1 196 85.2
Gohir.D09G196200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 3.8e-90 335.1 202 82.7
A04p08470 Brassica napus HOM05D005047 ORTHO05D006540 5.0e-90 334.7 202 80.2
BolC4t25799H Brassica oleracea HOM05D005047 ORTHO05D006540 5.0e-90 334.7 202 80.2
Hma1.2p1_0903F.1_g235140 Hydrangea macrophylla HOM05D005047 ORTHO05D006540 8.5e-90 334.0 210 81.4
Gohir.A09G202200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 1.5e-89 333.2 199 82.9
Duzib212G0386 Durio zibethinus HOM05D005047 ORTHO05D006540 1.9e-89 332.8 204 81.9
ECA248G2813 Erigeron canadensis HOM05D005047 ORTHO05D006540 1.2e-88 330.1 202 80.7
Potri.003G175800 Populus trichocarpa HOM05D005047 ORTHO05D006540 1.6e-88 329.7 207 80.7
Lj6A611T47 Lonicera japonica HOM05D005047 ORTHO05D006540 2.1e-88 329.3 209 81.3
Sc13g0002770 Simmondsia chinensis HOM05D005047 ORTHO05D006540 2.7e-88 328.9 202 79.7
EL10Ac3g06787 Beta vulgaris HOM05D005047 ORTHO05D006540 4.7e-88 328.2 202 81.7
THA.LOC104808728 Tarenaya hassleriana HOM05D005047 ORTHO05D006540 4.7e-88 328.2 200 81.5
Aa31LG9G3930 Aethionema arabicum HOM05D005047 ORTHO05D006540 6.1e-88 327.8 205 79.5
BcaB02g08656 Brassica carinata HOM05D005047 ORTHO05D006540 8.0e-88 327.4 202 79.7
Sabra03G0128700 Salix brachista HOM05D005047 ORTHO05D006540 8.0e-88 327.4 222 77.9
AL7G42780 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 1.4e-87 326.6 200 80.0
Sed0007809 Sechium edule HOM05D005047 ORTHO05D006540 1.8e-87 326.2 202 80.2
CsaV3_3G011290 Cucumis sativus L. HOM05D005047 ORTHO05D006540 2.3e-87 325.9 195 83.1
Prupe.1G060800 Prunus persica HOM05D005047 ORTHO05D006540 2.3e-87 325.9 206 78.6
Thhalv10026260m.g Eutrema salsugineum HOM05D005047 ORTHO05D006540 3.0e-87 325.5 204 79.4
SalBow3G2150 Salvia bowleyana HOM05D005047 ORTHO05D006540 3.0e-87 325.5 228 71.9
Sp7g11500 Schrenkiella parvula HOM05D005047 ORTHO05D006540 3.0e-87 325.5 204 79.4
vmacro00514 Vaccinium macrocarpon HOM05D005047 ORTHO05D006540 3.0e-87 325.5 207 79.2
AT4G13720 Arabidopsis thaliana HOM05D005047 ORTHO05D006540 4.0e-87 325.1 197 80.2
BcaC02g09395 Brassica carinata HOM05D005047 ORTHO05D006540 8.8e-87 323.9 199 79.9
AL5G12130 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 2.6e-86 322.4 205 78.5
CDE04G3429 Ceratophyllum demersum HOM05D005047 ORTHO05D006540 4.4e-86 321.6 201 81.1
SGA_v2.0_scaffold2G00831 Striga asiatica HOM05D005047 ORTHO05D006540 2.2e-85 319.3 232 71.6
Os10g0457500 Oryza sativa ssp. japonica HOM05D005047 ORTHO05D006540 1.1e-84 317.0 202 77.7
Hund19253 Selenicereus undatus HOM05D005047 ORTHO05D006540 1.1e-84 317.0 204 79.4
HPP92_015205 Vanilla planifolia HOM05D005047 ORTHO05D006540 1.4e-84 316.6 193 79.3
FAN12G1457 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.7e-83 312.4 205 77.1
FAN07G0410 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.0e-82 310.5 205 76.6
Zm00001eb046670 Zea mays HOM05D005047 ORTHO05D006540 2.9e-82 308.9 201 76.1
Ah.13g075240 Amaranthus hybridus HOM05D005047 ORTHO05D006540 1.5e-81 306.6 199 77.4
AUR62032663 Chenopodium quinoa HOM05D005047 ORTHO05D006540 1.5e-81 306.6 194 79.4
unitig_749.g13975 Utricularia gibba HOM05D005047 ORTHO05D006540 1.9e-81 306.2 214 73.4
Manes.15G048800 Manihot esculenta HOM05D005047 ORTHO05D006540 4.2e-81 305.1 202 75.2
TPR.G10100 Trifolium pratense HOM05D005047 ORTHO05D006540 4.2e-81 305.1 173 86.7
Lsat_1_v5_gn_0_4860 Lactuca sativa HOM05D005047 ORTHO05D006540 7.2e-81 304.3 244 66.8
Mapoly0026s0018 Marchantia polymorpha HOM05D005047 ORTHO05D006540 1.6e-80 303.1 190 77.9
ClCG05G003600 Citrullus lanatus HOM05D005047 ORTHO05D006540 4.7e-80 301.6 197 77.2
Manes.03G152700 Manihot esculenta HOM05D005047 ORTHO05D006540 1.4e-79 300.1 207 73.4
VMungo0720G0344 Vigna mungo HOM05D005047 ORTHO05D006540 1.8e-79 299.7 247 65.6
Dinv29555 Davidia involucrata HOM05D005047 ORTHO05D006540 1.2e-78 297.0 202 78.7
Pp3c16_19640 Physcomitrium patens HOM05D005047 ORTHO05D006540 8.3e-77 290.8 190 75.3
Nitab4.5_0010728g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 1.4e-76 290.0 208 73.6
SMO367G0232 Selaginella moellendorffii HOM05D005047 ORTHO05D006540 2.4e-76 289.3 207 69.6
Aa31LG9G3940 Aethionema arabicum HOM05D005047 ORTHO05D006540 2.7e-75 285.8 227 64.8
Oeu006715.2 Olea europaea HOM05D005047 ORTHO05D006540 3.5e-75 285.4 212 72.6
AagrBONN_evm.TU.Sc2ySwM_344.3277 Anthoceros agrestis HOM05D005047 ORTHO05D006540 4.3e-73 278.5 184 74.5
AUR62035305 Chenopodium quinoa HOM05D005047 ORTHO05D006540 7.3e-73 277.7 261 59.4
Nn3g19880 Nelumbo nucifera HOM05D005047 ORTHO05D006540 9.5e-73 277.3 207 72.0
CAN.G500.97 Capsicum annuum HOM05D005047 ORTHO05D006540 2.8e-72 275.8 160 83.1
Carub.0007s2874 Capsella rubella HOM05D005047 ORTHO05D006540 6.4e-69 264.6 159 80.5
ATR0088G035 Amborella trichopoda HOM05D005047 ORTHO05D006540 4.0e-63 245.4 142 83.8
Actinidia37393 Actinidia chinensis HOM05D005047 ORTHO05D006540 6.4e-61 238.0 214 64.5
Aqoxy2G03810 Aquilegia oxysepala HOM05D005047 ORTHO05D006540 1.1e-60 237.3 202 62.4
Peaxi162Scf00047g01312 Petunia axillaris HOM05D005047 ORTHO05D006540 1.1e-60 237.3 209 60.8
Atru.chr4.1794 Acer truncatum HOM05D005047 ORTHO05D006540 9.2e-60 234.2 139 81.3
MCO04G006 Micromonas commoda HOM05D005047 ORTHO05D006540 9.2e-60 234.2 176 65.3
MBI07_g19553_MAGBIO Magnolia biondii HOM05D005047 ORTHO05D006540 1.6e-59 233.4 227 60.4
SHI24117 Sapria himalayana HOM05D005047 ORTHO05D006540 2.5e-57 226.1 201 61.7
Cre02.g095089 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 2.8e-56 222.6 182 59.9
Zm00001eb377030 Zea mays HOM05D005047 ORTHO05D006540 4.7e-56 221.9 140 75.7
Rhsim09G0049500 Rhododendron simsii HOM05D005047 ORTHO05D006540 8.1e-56 221.1 146 74.0
arahy.Tifrunner.gnm1.ann1.BK86JE Arachis hypogaea HOM05D005047 ORTHO05D006540 1.4e-55 220.3 198 61.6
PRCOL_00006994 Prasinoderma coloniale HOM05D005047 ORTHO05D006540 3.2e-52 209.1 193 56.5
Zm00001eb086240 Zea mays HOM05D005047 ORTHO05D006540 6.6e-50 201.4 118 79.7
QL06p023224 Quercus lobata HOM05D005047 ORTHO05D006540 1.6e-48 196.8 116 80.2
CARHR219510 Cardamine hirsuta HOM05D005047 ORTHO05D006540 2.1e-48 196.4 139 69.1
MD13G1230900 Malus domestica HOM05D005047 ORTHO05D006540 1.5e-46 190.3 114 77.2
Zm00001eb102100 Zea mays HOM05D005047 ORTHO05D006540 6.4e-45 184.9 140 67.9
arahy.Tifrunner.gnm1.ann1.0X932T Arachis hypogaea HOM05D005047 ORTHO05D006540 1.1e-44 184.1 107 81.3
Cfa024488 Carpinus fangiana HOM05D005047 ORTHO05D006540 1.1e-44 184.1 180 53.3
Sed0007961 Sechium edule HOM05D005047 ORTHO05D006540 2.7e-43 179.5 181 58.6
Cre13.g568950 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 1.4e-39 167.2 173 51.4
TAR636G1612 Trochodendron aralioides HOM05D005047 ORTHO05D006540 6.9e-39 164.9 94 90.4
DCAR_002273 Daucus carota HOM05D005047 ORTHO05D006540 3.8e-37 159.1 93 87.1
Zm00001eb177140 Zea mays HOM05D005047 ORTHO05D006540 3.8e-37 159.1 102 71.6
Carub.0007s2873 Capsella rubella HOM05D005047 ORTHO05D006540 1.4e-36 157.1 94 76.6
QL06p023220 Quercus lobata HOM05D005047 ORTHO05D006540 5.4e-36 155.2 86 90.7
MELO3C031602.2 Cucumis melo HOM05D005047 ORTHO05D006540 7.8e-35 151.4 86 89.5
FvH4_4g05750 Fragaria vesca HOM05D005047 ORTHO05D006540 1.7e-34 150.2 94 83.0
MSTRG.21943 Avicennia marina HOM05D005047 ORTHO05D006540 1.5e-33 147.1 95 81.1
TWI09G0343 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 7.3e-33 144.8 103 68.9
Zm00001eb180620 Zea mays HOM05D005047 ORTHO05D006540 1.5e-30 137.1 86 72.1
Zm00001eb425490 Zea mays HOM05D005047 ORTHO05D006540 4.9e-29 132.1 74 78.4
FAN17G1156 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.1e-23 114.4 68 77.9
SEGI_09208 Sequoiadendron giganteum HOM05D005047 ORTHO05D006540 3.5e-19 99.4 61 75.4
Sabra01G0036900 Salix brachista HOM05D005047 ORTHO05D006540 1.3e-16 90.9 48 85.4
CBR_g49288 Chara braunii HOM05D005047 ORTHO05D006540 9.0e-15 84.7 56 66.1
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 7.6e-14 81.6 43 93.0
Medtr1g047400 Medicago truncatula HOM05D005047 ORTHO05D006540 3.8e-13 79.3 59 69.5
TPR.G40557 Trifolium pratense HOM05D005047 ORTHO05D006540 5.5e-12 75.5 46 84.8
EL10Ac7g17560 Beta vulgaris HOM05D005047 ORTHO05D006373 4.6e-11 72.4 39 84.6
arahy.Tifrunner.gnm1.ann1.FRRS2Q Arachis hypogaea HOM05D005047 ORTHO05D084578 3.0e-10 69.7 62 58.1
EL10Ac6g14438 Beta vulgaris HOM05D005047 ORTHO05D006540 5.1e-10 68.9 36 86.1
Duzib268G0889 Durio zibethinus HOM05D005047 ORTHO05D006540 2.5e-09 66.6 90 44.4
Ca_28777_v3 Cicer arietinum L. HOM05D005047 ORTHO05D147776 3.3e-09 66.2 135 34.8
Glyma.12G173400 Glycine max HOM05D005047 ORTHO05D006540 9.7e-09 64.7 37 83.8
FvH4_6g44040 Fragaria vesca HOM05D005047 ORTHO05D006540 2.2e-08 63.5 40 77.5
FAN01G1709 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.4e-07 60.1 40 75.0
FvH4_5g32911 Fragaria vesca HOM05D005047 ORTHO05D006540 4.1e-07 59.3 33 84.8
FAN26G2286 Fragaria x ananassa HOM05D005047 ORTHO05D006540 6.9e-07 58.5 34 82.4
FAN27G1012 Fragaria x ananassa HOM05D029863 ORTHO05D006540 2.6e-06 56.6 30 86.7
CsaV3_6G019130 Cucumis sativus L. HOM05D005047 ORTHO05D006540 5.9e-06 55.5 35 71.4


User provided reference genes

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