Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 7.7e-121 437.2 226 100.0
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.7e-115 419.5 223 96.9
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 7.1e-82 307.8 221 71.0
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 1.9e-79 299.7 223 70.9
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 1.6e-78 296.6 227 68.3
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 3.6e-78 295.4 222 68.0
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 4.8e-78 295.0 229 70.7
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 1.5e-76 290.0 210 69.5
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.6e-76 289.3 213 69.0
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 3.2e-74 282.3 223 65.5
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 1.2e-73 280.4 212 68.9
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 1.6e-73 280.0 223 66.8
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 3.5e-73 278.9 224 66.5
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 6.0e-73 278.1 227 64.8
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 7.9e-73 277.7 180 76.1
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 1.7e-72 276.6 223 63.7
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 3.9e-72 275.4 223 64.6
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 8.7e-72 274.2 222 64.4
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 1.9e-71 273.1 214 66.4
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 4.3e-71 271.9 202 67.8
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 7.3e-71 271.2 190 70.5
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 9.6e-71 270.8 189 71.4
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 9.6e-71 270.8 227 63.9
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 1.3e-70 270.4 219 64.8
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 1.4e-69 266.9 202 66.8
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 3.1e-69 265.8 187 69.5
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 4.0e-69 265.4 202 66.3
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 1.2e-68 263.8 222 62.6
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 1.5e-68 263.5 199 64.3
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 7.6e-68 261.2 223 62.8
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 3.8e-67 258.8 223 63.7
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 4.9e-67 258.5 222 60.8
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 6.4e-67 258.1 183 69.9
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 1.4e-66 256.9 186 70.4
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 3.2e-66 255.8 215 65.1
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 4.2e-66 255.4 214 63.6
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 1.2e-65 253.8 223 57.4
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 3.5e-65 252.3 215 60.9
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 4.6e-65 251.9 224 58.9
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 4.6e-65 251.9 227 58.1
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-64 250.8 199 63.3
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 3.0e-64 249.2 185 65.9
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 3.9e-64 248.8 185 65.9
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 3.9e-64 248.8 199 62.8
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 5.1e-64 248.4 229 58.5
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 6.7e-64 248.1 229 58.5
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 8.7e-64 247.7 215 60.0
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 8.7e-64 247.7 221 57.5
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.1e-63 247.3 224 58.0
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.5e-63 246.9 223 57.4
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 2.1e-62 243.0 222 60.8
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 1.8e-61 240.0 221 56.6
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 3.1e-61 239.2 219 56.6
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 9.0e-61 237.7 189 61.9
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 4.5e-60 235.3 188 61.7
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 1.0e-59 234.2 199 59.3
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 2.9e-59 232.6 199 58.3
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 6.5e-59 231.5 199 59.3
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 6.5e-59 231.5 186 62.9
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 8.4e-59 231.1 190 61.1
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 8.4e-59 231.1 221 54.8
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 1.9e-58 229.9 197 58.4
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 2.5e-58 229.6 190 60.5
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 3.2e-58 229.2 218 54.1
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 4.2e-58 228.8 229 53.3
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 7.1e-58 228.0 197 58.4
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 7.1e-58 228.0 229 52.4
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 1.2e-57 227.3 214 55.6
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 1.2e-57 227.3 214 55.6
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 1.2e-57 227.3 197 57.9
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 1.2e-57 227.3 219 54.3
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 4.6e-57 225.3 174 66.7
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 7.9e-57 224.6 180 61.1
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 1.3e-56 223.8 218 53.2
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 3.0e-56 222.6 220 53.6
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 3.0e-56 222.6 219 52.5
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 3.3e-55 219.2 227 52.9
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.7e-55 218.4 156 69.9
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 7.4e-55 218.0 227 53.7
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 2.8e-54 216.1 221 52.9
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 6.3e-54 214.9 200 56.5
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 4.1e-53 212.2 228 50.4
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 5.3e-53 211.8 219 51.6
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 6.9e-53 211.5 155 67.7
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.3e-51 207.2 221 51.6
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.8e-51 205.7 221 51.1
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 1.1e-50 204.1 170 60.6
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 5.5e-50 201.8 147 68.7
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.3e-50 201.1 156 66.0
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 7.9e-49 198.0 147 66.7
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 1.3e-48 197.2 249 45.0
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.7e-48 194.9 199 52.8
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 6.7e-48 194.9 147 68.0
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 3.3e-47 192.6 222 50.5
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.3e-47 192.2 149 66.4
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 4.3e-47 192.2 214 50.9
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.8e-46 188.7 217 52.5
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 3.4e-44 182.6 179 52.0
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 7.7e-44 181.4 194 50.5
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 1.7e-43 180.3 194 50.5
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 2.2e-43 179.9 187 51.9
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.9e-43 179.5 229 47.6
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 7.2e-42 174.9 135 66.7
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 1.2e-41 174.1 216 44.9
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.3e-39 166.0 152 56.6
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 4.1e-37 159.1 153 54.9
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.5e-35 151.8 132 57.6
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.0e-32 142.9 125 58.4
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 9.1e-29 131.3 116 56.9
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.6e-28 129.8 103 64.1
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.5e-28 129.0 188 42.6
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 3.0e-24 116.3 84 70.2
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.8e-24 114.8 123 51.2
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 7.5e-23 111.7 86 61.6
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 7.0e-21 105.1 71 67.6
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-20 104.0 127 49.6
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 8.5e-19 98.2 167 32.9
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.3e-16 90.1 99 52.5
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 5.2e-16 89.0 86 53.5
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 6.8e-16 88.6 98 46.9
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-15 87.8 88 52.3
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.0e-15 87.0 59 74.6
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 2.6e-15 86.7 95 47.4
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 4.8e-14 82.4 71 53.5
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-11 74.7 64 53.1
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 8.5e-11 71.6 66 51.5
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 2.5e-10 70.1 188 31.9
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 9.4e-10 68.2 47 61.7
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 9.4e-10 68.2 47 61.7
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-09 67.8 143 32.2
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 4.0e-08 62.8 61 50.8
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 4.0e-08 62.8 61 50.8
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.8e-07 58.2 48 58.3
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.3e-06 57.8 62 43.5


User provided reference genes

Program Settings