Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 0.0e+00 1982.2 1005 100.0
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 0.0e+00 1476.5 1008 77.3
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 0.0e+00 1239.6 1032 63.9
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 0.0e+00 1191.8 1010 64.7
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 0.0e+00 1143.6 973 64.3
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 0.0e+00 1099.3 1012 60.9
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 0.0e+00 1093.6 1019 59.9
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 0.0e+00 1083.6 1014 60.4
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 0.0e+00 1078.9 1009 59.0
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 5.4e-307 1057.7 1020 58.9
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 1.2e-306 1056.6 1030 58.9
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 2.6e-301 1038.9 1014 58.8
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 1.6e-298 1029.6 1018 58.0
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 1.2e-295 1020.0 1017 56.0
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 4.7e-295 1018.1 1012 57.1
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 1.4e-294 1016.5 1014 56.3
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 2.0e-293 1012.7 1034 55.9
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.2e-291 1005.4 1012 55.7
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.5e-290 1001.9 997 56.2
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 4.6e-290 1001.5 1018 57.3
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 6.0e-290 1001.1 1022 57.2
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 6.2e-287 991.1 1012 56.4
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 5.8e-285 984.6 1003 55.9
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 2.2e-284 982.6 1009 56.2
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 4.9e-284 981.5 1042 54.7
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 1.9e-283 979.5 1007 55.2
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 9.2e-283 977.2 1011 56.4
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 8.7e-281 970.7 1044 55.3
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 1.2e-277 960.3 1117 52.0
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 1.5e-277 959.9 1161 51.0
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 4.4e-277 958.4 1004 55.2
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 5.8e-277 958.0 993 55.0
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 5.8e-277 958.0 1010 54.5
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 9.9e-277 957.2 959 55.7
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 2.2e-276 956.1 1044 54.7
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 3.2e-275 952.2 1013 53.9
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 2.5e-272 942.6 1016 53.2
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 4.8e-271 938.3 1011 54.1
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 6.2e-271 937.9 720 66.7
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 1.4e-270 936.8 1060 51.0
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 1.8e-270 936.4 1027 54.0
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 5.3e-270 934.9 1074 50.7
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 1.2e-269 933.7 1012 54.2
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 3.4e-269 932.2 1018 53.9
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 3.4e-269 932.2 1005 53.4
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 1.3e-268 930.2 1069 50.2
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 6.4e-268 927.9 1012 53.6
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 1.1e-267 927.2 1067 50.7
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.4e-267 926.0 1012 53.8
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 4.2e-267 925.2 995 54.2
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 2.1e-266 922.9 1014 53.5
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 2.1e-266 922.9 1016 53.1
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 3.5e-266 922.2 1024 52.1
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 7.9e-266 921.0 1016 52.3
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 7.9e-266 921.0 1054 50.9
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 2.3e-265 919.5 1005 53.4
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 2.5e-264 916.0 1013 52.9
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 9.6e-264 914.1 1126 47.8
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 2.2e-260 902.9 1017 51.0
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 2.2e-260 902.9 1016 51.6
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.1e-259 900.6 999 53.5
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 1.1e-259 900.6 1017 52.0
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 4.6e-258 895.2 1066 49.0
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 2.3e-257 892.9 1065 50.5
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 5.1e-257 891.7 1004 51.6
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 6.7e-257 891.3 1014 51.2
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 8.7e-257 891.0 1008 50.8
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 8.2e-255 884.4 1009 52.1
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 3.1e-254 882.5 1053 51.0
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 1.2e-253 880.6 1010 50.5
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 3.2e-251 872.5 957 53.8
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.3e-249 866.3 1018 49.2
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 4.3e-248 862.1 1016 50.4
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 5.7e-248 861.7 1009 50.8
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 6.3e-247 858.2 993 50.6
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 5.3e-246 855.1 1015 49.5
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.6e-242 843.6 1016 50.4
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 3.6e-242 842.4 1024 49.7
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 3.9e-241 839.0 1022 49.0
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 5.1e-241 838.6 1015 49.8
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 1.1e-238 830.9 1026 49.4
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 1.8e-238 830.1 1018 48.0
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 1.0e-236 824.3 1019 48.6
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 6.5e-236 821.6 1018 49.3
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 6.1e-234 815.1 1012 48.6
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 4.4e-232 808.9 693 60.0
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 2.2e-231 806.6 704 60.5
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 5.3e-230 802.0 692 59.5
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 5.9e-229 798.5 1011 47.4
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 2.9e-228 796.2 1017 48.6
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 5.0e-228 795.4 1029 46.4
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.1e-227 794.3 1025 46.9
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 3.3e-224 782.7 671 59.9
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 2.8e-223 779.6 672 58.3
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 6.3e-223 778.5 678 59.1
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 3.1e-222 776.2 673 59.4
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 5.5e-219 765.4 1014 47.3
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 2.1e-218 763.5 760 53.7
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 4.4e-216 755.7 681 59.3
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 5.7e-216 755.4 1014 46.1
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 5.7e-216 755.4 690 57.4
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 7.5e-216 755.0 703 58.2
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 1.3e-215 754.2 1014 45.8
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 5.0e-212 742.3 1014 46.4
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 2.5e-211 740.0 1006 46.9
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 3.2e-211 739.6 1037 44.9
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 4.2e-211 739.2 697 55.1
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 5.5e-211 738.8 1072 43.9
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 9.4e-211 738.0 690 55.4
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 2.3e-209 733.4 718 55.3
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 6.8e-209 731.9 693 56.1
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 4.4e-208 729.2 1039 45.3
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 1.1e-203 714.5 1011 44.3
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 7.5e-200 701.8 1038 43.0
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.7e-199 700.7 1023 43.2
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 1.6e-173 614.4 699 48.9
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 3.3e-171 606.7 1051 39.7
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 1.9e-158 564.3 769 48.4
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 1.9e-155 554.3 927 39.8
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 2.4e-129 467.6 677 41.9
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 2.8e-114 417.5 306 64.4
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 5.5e-110 403.3 538 40.0
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 3.8e-103 380.6 792 33.3
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 2.5e-102 377.9 946 29.5
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 1.5e-94 352.1 461 42.1
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.8e-36 159.1 115 63.5
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.7e-34 152.5 115 62.6
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 1.6e-29 136.0 386 28.0
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 7.6e-27 127.1 380 35.3
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 7.9e-24 117.1 146 47.9
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 3.9e-23 114.8 177 40.1
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 3.9e-15 88.2 133 42.1
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 5.1e-15 87.8 133 42.1
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 1.2e-11 76.6 83 56.6
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 4.5e-11 74.7 102 43.1
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 1.9e-09 69.3 102 42.2
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 2.1e-08 65.9 86 48.8


User provided reference genes

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