Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 5.3e-84 314.3 159 100.0
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.2e-81 305.1 159 96.2
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.5e-78 296.2 156 94.2
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 3.6e-72 275.0 156 84.6
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 6.8e-71 270.8 158 81.6
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 8.8e-71 270.4 158 83.5
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 8.8e-71 270.4 158 83.5
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 8.8e-71 270.4 156 83.3
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 8.8e-71 270.4 156 83.3
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 1.5e-70 269.6 158 81.6
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.6e-70 268.9 159 82.4
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 3.4e-70 268.5 156 84.6
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.4e-70 268.1 155 82.6
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 7.5e-70 267.3 154 83.1
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 7.5e-70 267.3 154 83.1
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 9.8e-70 266.9 159 81.8
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 1.3e-69 266.5 159 80.5
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.7e-69 266.2 154 82.5
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.2e-69 265.8 159 81.8
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 2.8e-69 265.4 159 81.1
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 2.8e-69 265.4 154 81.8
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 3.7e-69 265.0 156 82.7
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 3.7e-69 265.0 156 83.3
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 3.7e-69 265.0 156 83.3
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 1.1e-68 263.5 156 82.1
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 3.1e-68 261.9 158 81.0
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 5.4e-68 261.2 158 81.6
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 5.4e-68 261.2 159 80.5
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 9.1e-68 260.4 159 78.6
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 9.1e-68 260.4 158 80.4
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 1.2e-67 260.0 156 82.1
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 1.6e-67 259.6 158 79.7
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.6e-67 259.6 158 79.7
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.6e-67 259.6 158 79.7
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.6e-67 259.6 158 79.7
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.6e-67 259.6 158 79.7
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.6e-67 259.6 158 79.7
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 2.0e-67 259.2 156 81.4
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 3.5e-67 258.5 159 78.6
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 4.5e-67 258.1 155 80.6
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 1.7e-66 256.1 154 80.5
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.9e-66 255.4 154 78.6
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 3.8e-66 255.0 159 77.4
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 3.8e-66 255.0 154 81.2
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 6.5e-66 254.2 158 78.5
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 6.5e-66 254.2 155 79.4
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 8.5e-66 253.8 154 79.2
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 1.1e-65 253.4 156 75.0
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 1.9e-65 252.7 155 78.1
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 3.2e-65 251.9 158 77.2
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 3.2e-65 251.9 154 79.2
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 4.2e-65 251.5 158 75.3
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 5.5e-65 251.1 156 78.2
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 5.5e-65 251.1 159 74.8
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 9.4e-65 250.4 156 76.9
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 9.4e-65 250.4 158 75.3
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 9.4e-65 250.4 153 79.1
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.2e-64 250.0 154 77.3
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.2e-64 250.0 154 77.3
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 1.6e-64 249.6 158 74.1
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 2.1e-64 249.2 156 76.3
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 3.6e-64 248.4 159 76.1
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 3.6e-64 248.4 154 78.6
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 4.7e-64 248.1 154 77.9
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 6.1e-64 247.7 154 77.9
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 6.1e-64 247.7 155 77.4
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 6.1e-64 247.7 154 77.9
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 6.1e-64 247.7 153 77.8
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 1.0e-63 246.9 158 75.3
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 1.0e-63 246.9 154 76.6
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 1.4e-63 246.5 154 76.6
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 1.4e-63 246.5 158 75.9
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.8e-63 246.1 139 85.6
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 1.8e-63 246.1 153 77.8
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.3e-63 245.7 154 75.3
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 3.0e-63 245.4 153 77.8
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 5.2e-63 244.6 155 76.8
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 5.2e-63 244.6 153 77.8
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 6.8e-63 244.2 159 73.6
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 8.8e-63 243.8 154 74.0
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 8.8e-63 243.8 156 76.3
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 8.8e-63 243.8 154 73.4
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.2e-62 243.4 154 76.6
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 1.5e-62 243.0 159 74.8
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 2.0e-62 242.7 154 74.0
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 2.0e-62 242.7 154 77.9
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 4.4e-62 241.5 155 75.5
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 4.4e-62 241.5 155 75.5
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 4.4e-62 241.5 151 76.8
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 4.4e-62 241.5 156 75.0
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 4.4e-62 241.5 153 77.1
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 5.7e-62 241.1 158 74.7
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 9.8e-62 240.4 154 72.7
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 1.3e-61 240.0 156 73.1
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 2.2e-61 239.2 155 78.1
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 3.7e-61 238.4 155 72.9
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 3.7e-61 238.4 155 72.9
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 3.7e-61 238.4 155 72.9
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 3.7e-61 238.4 155 72.9
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 3.7e-61 238.4 155 72.9
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 4.9e-61 238.0 154 72.1
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 6.3e-61 237.7 150 73.3
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 6.3e-61 237.7 203 61.1
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 8.3e-61 237.3 158 72.8
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 3.1e-60 235.3 150 72.7
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 4.1e-60 235.0 149 73.2
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 4.1e-60 235.0 149 73.2
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 4.1e-60 235.0 149 73.2
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 7.0e-60 234.2 150 72.0
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 2.3e-58 229.2 155 69.0
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 3.8e-58 228.4 143 76.9
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 2.5e-57 225.7 137 78.8
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 7.2e-57 224.2 125 87.2
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 3.6e-56 221.9 135 80.0
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 4.0e-55 218.4 145 71.7
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 1.2e-54 216.9 156 66.7
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 4.4e-54 214.9 145 69.7
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 3.7e-53 211.8 244 50.0
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.5e-51 205.3 156 66.0
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.0e-50 203.8 123 78.9
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.0e-50 203.8 155 67.1
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 1.3e-50 203.4 208 51.4
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 1.7e-50 203.0 191 57.6
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 1.8e-47 193.0 299 41.5
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 1.7e-45 186.4 156 59.0
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 3.2e-44 182.2 110 78.2
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 3.2e-44 182.2 112 75.9
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 5.6e-41 171.4 141 62.4
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 7.8e-35 151.0 93 79.6
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 3.0e-34 149.1 154 50.0
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 1.5e-33 146.7 95 74.7
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 2.1e-32 142.9 133 54.1
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.1e-31 140.6 149 49.7
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 1.4e-31 140.2 107 65.4
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.4e-31 140.2 149 49.0
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 5.8e-30 134.8 132 52.3
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 4.9e-29 131.7 152 46.7
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 2.7e-27 125.9 77 74.0
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 4.6e-27 125.2 146 52.1
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 3.9e-26 122.1 146 47.3
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 3.3e-25 119.0 150 44.0
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 8.9e-23 110.9 83 63.9
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.4e-22 108.6 72 70.8
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.4e-22 108.6 72 70.8
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 9.9e-22 107.5 65 76.9
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.2e-21 106.3 76 68.4
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 1.1e-20 104.0 138 41.3
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 1.9e-20 103.2 64 76.6
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.7e-19 99.4 64 73.4
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 6.0e-19 98.2 78 62.8
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 7.8e-19 97.8 101 54.5
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 2.1e-11 73.2 146 36.3
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 1.6e-08 63.5 45 64.4
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 4.8e-08 62.0 45 62.2
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 4.0e-07 58.9 47 61.7


User provided reference genes

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