Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 1.4e-122 443.0 226 100.0
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 1.8e-109 399.4 223 88.8
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 7.5e-108 394.0 224 87.1
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 9.8e-108 393.7 222 88.7
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 1.3e-107 393.3 222 88.7
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 1.3e-107 393.3 222 88.7
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 1.7e-107 392.9 223 87.0
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 2.9e-107 392.1 223 88.3
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 3.7e-107 391.7 223 88.8
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 1.1e-106 390.2 224 87.1
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 3.2e-106 388.7 224 86.2
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 7.0e-106 387.5 222 86.5
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 1.6e-105 386.3 221 86.0
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 2.0e-105 386.0 219 87.7
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 3.5e-105 385.2 224 86.2
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 3.5e-105 385.2 223 86.5
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 4.6e-105 384.8 219 85.4
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 4.6e-105 384.8 219 85.4
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 6.0e-105 384.4 220 85.9
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 6.0e-105 384.4 219 84.5
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 1.0e-104 383.6 224 85.7
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 1.3e-104 383.3 221 86.4
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.3e-104 382.5 223 84.8
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 3.0e-104 382.1 223 86.1
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 5.0e-104 381.3 222 86.9
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 8.6e-104 380.6 221 86.9
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 1.1e-103 380.2 218 85.3
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 5.6e-103 377.9 221 86.0
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 2.8e-102 375.6 222 83.3
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 1.4e-101 373.2 219 83.6
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 1.8e-101 372.9 216 85.6
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 3.1e-101 372.1 221 84.6
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 4.0e-101 371.7 219 85.4
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 6.8e-101 370.9 220 84.5
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 8.9e-101 370.5 259 75.3
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 8.9e-101 370.5 221 84.6
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 8.9e-101 370.5 213 85.9
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 8.9e-101 370.5 221 84.6
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 8.9e-101 370.5 219 84.5
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 1.2e-100 370.2 213 86.4
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.5e-100 369.8 233 79.8
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 2.0e-100 369.4 221 84.2
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 2.6e-100 369.0 222 82.9
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 4.4e-100 368.2 219 83.1
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 5.8e-100 367.9 221 83.7
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 9.8e-100 367.1 219 83.1
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 1.3e-99 366.7 213 84.5
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 1.3e-99 366.7 213 84.0
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 2.2e-99 365.9 217 83.9
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 2.9e-99 365.5 221 82.4
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 2.9e-99 365.5 222 80.6
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 3.7e-99 365.2 223 81.6
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 4.9e-99 364.8 219 80.8
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 6.4e-99 364.4 213 82.6
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 1.1e-98 363.6 223 81.2
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 3.2e-98 362.1 219 80.4
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 4.1e-98 361.7 221 79.2
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 4.1e-98 361.7 215 82.8
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 5.4e-98 361.3 220 80.9
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 3.5e-97 358.6 220 78.6
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 6.0e-97 357.8 220 80.0
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 6.0e-97 357.8 220 79.5
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 1.0e-96 357.1 224 79.0
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 1.0e-96 357.1 220 79.5
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 2.3e-96 355.9 220 78.2
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 3.0e-96 355.5 220 78.2
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 3.9e-96 355.1 220 78.2
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 6.6e-96 354.4 219 78.1
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 6.6e-96 354.4 222 79.3
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 8.6e-96 354.0 223 76.7
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 8.6e-96 354.0 223 76.7
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 8.6e-96 354.0 220 79.5
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.9e-95 352.8 220 77.3
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 2.5e-95 352.4 224 79.0
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 4.3e-95 351.7 220 76.8
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 4.3e-95 351.7 266 69.9
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 7.3e-95 350.9 215 80.0
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 9.5e-95 350.5 219 77.2
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 2.1e-94 349.4 220 76.8
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 3.6e-94 348.6 220 77.7
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 4.7e-94 348.2 224 80.4
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 6.2e-94 347.8 221 76.5
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 1.2e-92 343.6 222 76.1
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 2.6e-92 342.4 223 78.0
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 4.9e-91 338.2 213 77.9
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 2.4e-90 335.9 224 73.7
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.7e-89 332.4 220 73.2
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 2.7e-89 332.4 222 73.4
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 4.6e-89 331.6 220 72.7
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 7.8e-89 330.9 268 63.8
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 3.0e-88 328.9 223 73.5
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 6.6e-88 327.8 222 72.5
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 6.6e-88 327.8 220 71.8
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 6.6e-88 327.8 220 73.2
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 6.6e-88 327.8 220 71.8
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 6.6e-88 327.8 220 73.2
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 6.6e-88 327.8 186 87.6
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 6.6e-88 327.8 225 76.9
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 1.5e-87 326.6 210 74.3
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 1.5e-87 326.6 220 71.4
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 1.9e-87 326.2 220 71.4
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 2.5e-87 325.9 220 70.9
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 5.6e-87 324.7 220 71.4
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 7.3e-87 324.3 220 70.5
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 7.3e-87 324.3 221 73.3
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 3.3e-79 298.9 213 68.1
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 3.3e-79 298.9 177 82.5
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 5.6e-79 298.1 214 66.4
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 1.3e-78 297.0 223 66.4
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 3.6e-78 295.4 213 67.1
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 1.8e-77 293.1 213 66.2
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.2e-76 290.4 217 66.8
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 2.6e-76 289.3 215 66.5
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.1e-74 283.9 212 63.2
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.0e-72 277.3 180 74.4
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 2.2e-67 259.6 216 62.0
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.1e-61 240.7 141 82.3
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 1.9e-58 229.9 124 87.9
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.7e-57 226.1 128 85.9
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 4.8e-54 215.3 132 83.3
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 6.3e-54 214.9 122 85.2
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 1.8e-53 213.4 229 49.8
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 2.4e-53 213.0 130 81.5
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 2.2e-46 189.9 159 65.4
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 3.8e-43 179.1 129 72.9
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.9e-42 176.8 124 68.5
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.6e-41 173.7 115 73.0
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 2.4e-37 159.8 107 72.9
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 9.1e-37 157.9 95 84.2
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 2.0e-36 156.8 92 85.9
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.2e-33 147.5 92 76.1
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 4.7e-33 145.6 91 72.5
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.5e-31 140.6 164 44.5
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 2.4e-29 133.3 202 41.1
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 2.9e-27 126.3 219 35.6
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 6.5e-27 125.2 78 76.9
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.1e-26 124.4 220 35.9
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 4.2e-26 122.5 189 36.5
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 7.2e-26 121.7 181 38.1
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 7.2e-26 121.7 94 67.0
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 2.3e-24 116.7 200 39.0
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 4.0e-24 115.9 73 79.5
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 1.5e-23 114.0 71 76.1
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 4.4e-23 112.5 62 87.1
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 1.3e-22 110.9 75 73.3
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 1.1e-21 107.8 198 37.4
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 2.4e-21 106.7 98 61.2
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 1.6e-20 104.0 194 35.6
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 1.6e-20 104.0 204 34.8
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.7e-20 103.2 88 61.4
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 7.7e-20 101.7 172 36.0
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 7.7e-20 101.7 60 78.3
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 4.2e-18 95.9 58 79.3
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 2.3e-16 90.1 63 71.4
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 3.0e-16 89.7 53 81.1
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 4.0e-16 89.4 59 74.6
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 5.2e-16 89.0 70 62.9
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 9.8e-15 84.7 46 84.8
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 1.8e-13 80.5 68 60.3
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 1.9e-10 70.5 91 47.3
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 7.2e-10 68.6 68 52.9
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 9.4e-10 68.2 91 45.1
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 1.2e-09 67.8 65 53.8
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 1.6e-09 67.4 64 54.7
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 1.6e-09 67.4 66 56.1
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 3.6e-09 66.2 59 57.6
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 1.4e-08 64.3 57 57.9
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 2.0e-07 60.5 39 74.4
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 3.7e-06 56.2 48 58.3


User provided reference genes

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