Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 8.0e-126 453.8 226 100.0
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 9.8e-116 420.2 226 90.7
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 6.8e-101 370.9 222 80.2
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 4.4e-100 368.2 226 80.1
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 7.5e-100 367.5 226 81.0
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 9.8e-100 367.1 226 81.0
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 2.2e-99 365.9 226 78.8
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 1.2e-97 360.1 226 77.9
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.2e-97 360.1 226 76.5
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 4.6e-97 358.2 226 77.9
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 6.0e-97 357.8 226 76.5
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 3.0e-96 355.5 225 77.3
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.5e-95 353.2 226 77.0
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 4.3e-95 351.7 221 77.4
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 6.2e-94 347.8 226 76.1
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.5e-92 343.2 229 73.8
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 2.0e-92 342.8 227 74.9
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 9.9e-92 340.5 227 75.8
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.9e-90 336.3 232 72.8
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 3.2e-90 335.5 229 75.5
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 4.1e-90 335.1 226 73.5
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 5.4e-90 334.7 226 75.2
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 7.1e-90 334.3 226 75.2
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.1e-89 332.8 228 71.5
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.1e-89 332.8 228 71.5
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.7e-88 329.7 227 71.4
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.0e-88 328.9 227 71.4
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 3.9e-88 328.6 223 72.6
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 3.9e-88 328.6 227 72.2
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 5.1e-88 328.2 227 70.9
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 8.6e-88 327.4 227 70.9
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 8.6e-88 327.4 228 70.2
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 3.3e-87 325.5 229 71.6
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.3e-87 325.5 227 70.5
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 3.3e-87 325.5 227 72.7
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 9.6e-87 323.9 221 70.6
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.6e-86 323.2 227 72.7
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.6e-86 323.2 227 71.4
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 4.7e-86 321.6 226 73.5
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 4.7e-86 321.6 226 69.5
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 8.1e-86 320.9 230 72.2
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 8.1e-86 320.9 223 71.7
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 5.2e-85 318.2 226 73.5
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 5.2e-85 318.2 229 69.9
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 8.9e-85 317.4 226 71.7
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 2.0e-84 316.2 233 71.7
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.3e-83 313.5 230 70.4
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.3e-83 313.5 227 67.8
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 1.3e-83 313.5 229 69.4
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 2.2e-83 312.8 230 67.8
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 4.9e-83 311.6 226 67.3
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 4.9e-83 311.6 229 68.1
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 2.4e-82 309.3 233 67.8
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.2e-82 308.9 243 65.4
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 2.1e-81 306.2 236 66.1
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.1e-81 306.2 227 69.6
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 4.6e-81 305.1 228 68.9
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 1.3e-80 303.5 227 68.3
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 3.0e-80 302.4 230 67.4
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.5e-79 300.1 226 65.9
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.5e-79 300.1 226 67.3
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 3.3e-79 298.9 230 67.4
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 1.3e-78 297.0 226 69.5
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.8e-77 293.1 226 65.5
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 1.8e-77 293.1 230 66.1
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 5.3e-77 291.6 228 69.7
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 9.0e-77 290.8 221 68.3
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 2.0e-76 289.7 230 65.7
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 5.8e-76 288.1 168 81.5
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 9.9e-76 287.3 231 63.6
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 9.9e-76 287.3 227 65.6
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.3e-75 287.0 230 68.3
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 1.3e-75 287.0 227 63.9
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.3e-75 287.0 229 66.4
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 3.8e-75 285.4 229 63.8
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 8.4e-75 284.3 219 63.0
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 1.4e-74 283.5 223 67.3
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.2e-74 282.0 221 62.9
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 9.3e-74 280.8 218 64.7
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 9.3e-74 280.8 218 66.1
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 9.3e-74 280.8 218 65.6
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 9.3e-74 280.8 221 62.9
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.6e-73 280.0 221 62.4
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 4.6e-73 278.5 219 64.4
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 4.6e-73 278.5 228 65.4
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 3.0e-72 275.8 229 61.6
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.0e-72 275.8 227 63.4
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 3.9e-72 275.4 223 62.8
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 8.7e-72 274.2 228 62.3
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.5e-71 273.5 224 62.9
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 3.3e-71 272.3 216 63.9
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 7.3e-71 271.2 228 61.4
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 7.3e-71 271.2 229 60.7
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 6.2e-70 268.1 229 61.6
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 6.2e-70 268.1 218 64.2
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 8.1e-70 267.7 227 62.1
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.4e-69 266.9 221 62.4
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.8e-69 266.5 221 62.4
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 5.3e-69 265.0 189 69.8
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 6.9e-69 264.6 220 62.3
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 6.9e-69 264.6 221 62.0
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 1.7e-67 260.0 224 62.5
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 1.7e-67 260.0 224 62.5
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.9e-67 259.2 217 59.9
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 2.7e-65 252.7 231 61.5
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 2.7e-65 252.7 218 62.8
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 6.0e-65 251.5 222 59.5
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 6.0e-65 251.5 213 57.3
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 7.9e-65 251.1 152 80.3
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 1.3e-64 250.4 227 58.6
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 1.3e-64 250.4 222 59.0
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 2.3e-64 249.6 217 57.1
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 3.0e-64 249.2 227 58.6
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 6.7e-64 248.1 226 57.1
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 6.7e-64 248.1 226 57.1
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 6.7e-64 248.1 258 56.6
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.1e-63 247.3 221 56.1
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 1.1e-63 247.3 226 56.6
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.5e-63 246.9 226 60.2
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 2.5e-63 246.1 227 59.0
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.3e-63 245.7 219 55.3
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 4.3e-63 245.4 227 59.0
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 5.6e-63 245.0 219 55.3
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 9.6e-63 244.2 228 59.6
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.1e-62 243.0 219 54.3
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 6.2e-62 241.5 186 65.6
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 6.2e-62 241.5 225 54.2
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 1.1e-61 240.7 227 57.7
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.1e-61 240.7 219 53.4
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 3.1e-61 239.2 226 55.8
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 9.0e-61 237.7 240 53.3
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.5e-60 235.3 221 53.8
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.7e-59 233.4 227 57.3
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 1.7e-59 233.4 219 56.2
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 2.9e-59 232.6 219 53.9
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 3.8e-59 232.3 230 52.6
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 1.1e-58 230.7 237 53.2
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 1.4e-58 230.3 204 56.4
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.2e-58 229.2 228 55.7
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.6e-57 226.9 248 50.8
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 1.6e-57 226.9 221 52.0
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 2.1e-57 226.5 203 58.6
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 2.7e-57 226.1 237 51.9
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 2.5e-55 219.5 145 69.7
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 3.3e-55 219.2 226 53.5
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 6.3e-54 214.9 241 50.6
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.1e-53 214.2 210 55.7
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 2.4e-53 213.0 192 55.2
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.4e-52 209.1 203 51.7
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 5.8e-52 208.4 168 58.9
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.0e-51 207.6 205 51.2
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.7e-51 206.8 281 48.0
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 2.2e-51 206.5 229 49.8
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 9.3e-50 201.1 165 58.8
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.2e-49 200.7 228 53.9
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.1e-47 194.1 168 57.1
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.1e-47 194.1 130 66.9
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 5.7e-47 191.8 195 53.3
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 6.3e-46 188.3 167 56.9
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 8.2e-46 188.0 164 62.8
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.8e-45 186.8 167 55.1
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 1.8e-45 186.8 153 57.5
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 4.1e-45 185.7 176 51.7
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 4.5e-44 182.2 228 50.4
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 7.7e-44 181.4 123 70.7
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 2.2e-43 179.9 214 48.1
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 2.3e-40 169.9 139 61.2
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 2.0e-39 166.8 216 47.2
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 2.4e-37 159.8 230 44.3
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 2.4e-37 159.8 230 44.3
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 2.4e-37 159.8 108 64.8
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 5.3e-37 158.7 173 47.4
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 2.0e-36 156.8 82 89.0
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 2.6e-36 156.4 227 45.4
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 4.1e-29 132.5 88 72.7
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.0e-24 117.9 116 57.8
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 7.5e-23 111.7 84 61.9
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 3.2e-18 96.3 54 74.1
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 8.0e-17 91.7 54 74.1


User provided reference genes

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