Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.3e-158 563.1 302 100.0
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 2.0e-116 422.9 309 75.1
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 3.6e-89 332.4 282 69.5
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 3.6e-89 332.4 335 62.7
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.3e-86 323.9 332 62.0
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.2e-78 296.6 278 62.9
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 2.4e-77 293.1 280 61.4
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.5e-74 283.1 290 59.0
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 1.7e-70 270.4 299 57.9
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 2.2e-70 270.0 299 57.9
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 2.4e-69 266.5 293 60.8
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 5.4e-69 265.4 321 53.0
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 1.6e-68 263.8 299 56.9
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 4.6e-68 262.3 286 59.8
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 4.6e-68 262.3 316 53.2
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 1.0e-67 261.2 295 59.7
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.3e-67 260.8 324 53.1
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 3.0e-67 259.6 258 61.6
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 3.0e-67 259.6 324 53.1
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 6.6e-67 258.5 292 58.2
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 1.8e-64 250.4 283 56.2
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 8.9e-64 248.1 329 52.3
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 1.5e-63 247.3 307 53.7
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 4.4e-63 245.7 248 59.7
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 7.5e-63 245.0 326 51.2
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.3e-62 244.2 256 59.4
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 2.9e-62 243.0 283 54.8
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 3.7e-62 242.7 310 53.2
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 4.9e-62 242.3 284 54.2
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 6.4e-62 241.9 250 58.4
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 8.3e-62 241.5 339 50.7
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 1.1e-61 241.1 283 54.1
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 4.1e-61 239.2 282 57.8
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.2e-60 237.7 249 58.2
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 2.7e-60 236.5 240 56.2
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 6.0e-60 235.3 331 50.2
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 1.7e-59 233.8 330 50.3
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 3.9e-59 232.6 331 49.2
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 3.9e-59 232.6 299 52.5
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 6.6e-59 231.9 324 48.8
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 8.6e-59 231.5 280 52.5
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 1.1e-58 231.1 326 49.7
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 4.3e-58 229.2 256 56.2
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 7.3e-58 228.4 264 54.5
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 9.5e-58 228.0 331 48.9
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 1.6e-57 227.3 301 52.5
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 1.6e-57 227.3 294 50.7
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 4.7e-57 225.7 276 54.7
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 8.1e-57 224.9 329 47.1
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 8.9e-56 221.5 214 61.2
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 3.4e-55 219.5 291 48.1
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 5.8e-55 218.8 289 50.9
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.7e-54 217.2 308 48.1
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 2.9e-54 216.5 236 57.2
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.7e-54 216.1 253 53.4
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 6.4e-54 215.3 275 53.8
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 8.4e-54 214.9 279 50.9
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.1e-53 214.5 325 45.8
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.4e-53 214.2 272 53.7
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 1.4e-53 214.2 218 60.6
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 2.4e-53 213.4 214 62.1
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 3.2e-53 213.0 193 67.4
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 4.1e-53 212.6 279 50.9
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 4.1e-53 212.6 272 53.3
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 7.8e-52 208.4 192 65.1
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 7.8e-52 208.4 278 49.6
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.3e-51 206.8 279 52.0
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 3.9e-51 206.1 191 64.9
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 8.6e-51 204.9 272 49.6
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.1e-50 204.5 208 59.6
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 1.5e-50 204.1 250 53.6
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 9.6e-50 201.4 205 57.6
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 9.6e-50 201.4 192 63.0
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 1.2e-49 201.1 275 48.7
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 1.6e-49 200.7 153 75.8
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 1.6e-49 200.7 192 62.0
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.6e-49 200.7 285 47.7
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 2.1e-49 200.3 272 48.9
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 2.8e-49 199.9 272 50.4
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 8.1e-49 198.4 232 54.3
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.1e-48 198.0 237 54.4
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.1e-48 198.0 232 54.3
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.4e-48 197.6 280 51.1
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.8e-48 197.2 187 60.4
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 2.4e-48 196.8 274 46.7
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 2.4e-48 196.8 256 50.8
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 3.1e-48 196.4 147 72.8
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 6.8e-48 195.3 183 63.4
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 1.2e-47 194.5 272 49.6
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 1.2e-47 194.5 206 58.7
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.2e-47 194.5 283 47.7
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 1.2e-47 194.5 192 61.5
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 4.4e-47 192.6 247 51.4
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 7.6e-47 191.8 344 44.2
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 2.9e-46 189.9 230 52.6
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 2.9e-46 189.9 288 49.3
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 6.4e-46 188.7 191 59.7
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 8.4e-46 188.3 272 46.7
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 8.4e-46 188.3 265 48.3
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 8.4e-46 188.3 272 46.7
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 1.9e-45 187.2 265 47.9
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.9e-45 187.2 279 45.9
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 4.2e-45 186.0 230 52.2
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 9.3e-45 184.9 218 52.8
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 1.2e-44 184.5 189 59.3
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 2.7e-44 183.3 222 49.1
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 3.5e-44 183.0 338 40.8
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 1.0e-43 181.4 266 46.2
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 3.9e-43 179.5 287 45.6
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 5.1e-43 179.1 168 59.5
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 1.1e-42 177.9 264 45.1
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 2.8e-41 173.3 222 50.5
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 6.9e-40 168.7 226 48.7
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 7.6e-39 165.2 167 59.9
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 2.9e-38 163.3 206 48.1
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 2.9e-38 163.3 140 69.3
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 7.1e-37 158.7 142 67.6
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.2e-36 157.9 146 64.4
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 1.6e-36 157.5 221 48.4
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 1.6e-36 157.5 193 54.9
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 2.1e-36 157.1 153 58.2
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.3e-35 154.5 224 50.4
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 1.7e-35 154.1 125 71.2
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 2.3e-35 153.7 194 47.4
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 3.0e-35 153.3 119 73.1
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 2.1e-33 147.1 181 50.3
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 2.0e-31 140.6 113 73.5
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 5.8e-31 139.0 143 62.2
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 1.7e-30 137.5 115 64.3
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 9.3e-29 131.7 98 75.5
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 1.6e-28 131.0 180 51.7
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 1.3e-27 127.9 149 56.4
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.0e-23 114.0 98 67.3
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.0e-22 111.7 103 59.2
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 6.7e-19 99.0 232 34.9
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 1.9e-18 97.4 130 45.4
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 3.3e-18 96.7 207 36.2
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.7e-17 93.2 81 66.7
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 5.3e-16 89.4 61 85.2
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 6.9e-16 89.0 61 82.0
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 1.3e-14 84.7 136 40.4
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 5.0e-14 82.8 94 46.8
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 6.5e-14 82.4 117 51.3
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 7.2e-13 79.0 96 56.2
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.6e-12 77.8 112 48.2
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 3.5e-12 76.6 146 36.3
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 3.9e-11 73.2 49 83.7
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.1e-10 71.6 46 87.0
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.9e-10 70.9 210 34.3


User provided reference genes

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