Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.1e-88 330.1 180 100.0
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.1e-48 197.2 117 87.2
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 3.9e-14 82.4 118 45.8
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 5.0e-14 82.0 113 46.9
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 5.0e-14 82.0 113 46.9
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 5.0e-14 82.0 126 43.7
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 5.0e-14 82.0 131 45.0
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 1.5e-13 80.5 118 43.2
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 7.3e-13 78.2 133 42.1
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 1.6e-12 77.0 121 46.3
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 2.1e-12 76.6 101 48.5
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 3.6e-12 75.9 122 42.6
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 8.0e-12 74.7 118 41.5
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.1e-11 74.3 100 46.0
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.4e-11 73.9 111 43.2
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.8e-11 73.6 120 40.0
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 4.0e-11 72.4 109 47.7
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 5.2e-11 72.0 118 44.1
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 6.8e-11 71.6 111 42.3
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 6.8e-11 71.6 103 41.7
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 8.9e-11 71.2 127 41.7
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 1.2e-10 70.9 132 37.9
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 1.5e-10 70.5 120 40.8
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 1.5e-10 70.5 106 42.5
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 4.4e-10 68.9 119 39.5
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 5.8e-10 68.6 117 41.9
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 5.8e-10 68.6 131 38.9
TAR636G1337 Trochodendron aralioides HOM05D007866 ORTHO05D003871 5.8e-10 68.6 110 46.4
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 7.5e-10 68.2 117 41.9
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 9.8e-10 67.8 95 41.1
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 2.2e-09 66.6 133 37.6
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 2.9e-09 66.2 96 45.8
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 4.9e-09 65.5 99 43.4
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 4.9e-09 65.5 128 39.1
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 8.3e-09 64.7 46 63.0
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.1e-08 64.3 104 42.3
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 1.4e-08 63.9 96 43.8
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.4e-08 63.9 96 43.8
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.4e-08 63.9 96 43.8
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 1.4e-08 63.9 119 38.7
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 2.4e-08 63.2 117 43.6
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.2e-08 62.8 46 65.2
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.2e-08 62.8 46 65.2
Dinv35543 Davidia involucrata HOM05D007866 ORTHO05D003871 4.1e-08 62.4 100 42.0
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 5.4e-08 62.0 41 65.9
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 5.4e-08 62.0 87 46.0
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 5.4e-08 62.0 88 46.6
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 5.4e-08 62.0 101 41.6
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 7.0e-08 61.6 52 63.5
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 7.0e-08 61.6 47 59.6
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 7.0e-08 61.6 113 38.1
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 7.0e-08 61.6 46 60.9
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 9.2e-08 61.2 53 58.5
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 9.2e-08 61.2 34 73.5
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 9.2e-08 61.2 102 40.2
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 1.2e-07 60.8 48 66.7
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 1.2e-07 60.8 48 66.7
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 1.6e-07 60.5 102 40.2
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 3.5e-07 59.3 32 87.5
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 3.5e-07 59.3 46 58.7
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 4.6e-07 58.9 34 82.4
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 4.6e-07 58.9 34 82.4
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 4.6e-07 58.9 46 58.7
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 4.6e-07 58.9 99 38.4
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 6.0e-07 58.5 72 48.6
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 6.0e-07 58.5 72 48.6
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 6.0e-07 58.5 72 48.6
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 6.0e-07 58.5 34 82.4
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 6.0e-07 58.5 121 33.9
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 6.0e-07 58.5 41 63.4
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 6.0e-07 58.5 93 41.9
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 7.8e-07 58.2 51 54.9
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 7.8e-07 58.2 47 59.6
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 7.8e-07 58.2 81 42.0
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 1.3e-06 57.4 69 42.0
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 1.3e-06 57.4 33 72.7
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.3e-06 57.4 46 58.7
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.3e-06 57.4 46 58.7
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 1.3e-06 57.4 33 72.7
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 1.3e-06 57.4 33 72.7
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 1.3e-06 57.4 34 82.4
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 1.7e-06 57.0 101 43.6
ECA236G0848 Erigeron canadensis HOM05D007866 ORTHO05D003871 1.7e-06 57.0 118 33.9
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 1.7e-06 57.0 98 39.8
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 1.7e-06 57.0 99 38.4
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 1.7e-06 57.0 41 61.0
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 2.3e-06 56.6 41 58.5
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 2.3e-06 56.6 100 43.0
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 3.0e-06 56.2 46 60.9
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 3.0e-06 56.2 44 56.8
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 3.0e-06 56.2 47 55.3
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 3.9e-06 55.8 99 39.4
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 5.0e-06 55.5 41 58.5
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 5.0e-06 55.5 79 40.5
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 5.0e-06 55.5 32 81.2
DCAR_010424 Daucus carota HOM05D007866 ORTHO05D003871 6.6e-06 55.1 100 41.0
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 6.6e-06 55.1 99 38.4
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 6.6e-06 55.1 46 58.7
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 8.6e-06 54.7 93 37.6
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 8.6e-06 54.7 130 36.9


User provided reference genes

Program Settings