Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 4.9e-52 207.6 112 100.0
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 4.1e-30 134.8 109 68.8
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 2.7e-26 122.1 109 57.8
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 6.1e-26 120.9 110 62.7
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 1.3e-23 113.2 110 59.1
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 2.2e-23 112.5 112 57.1
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 2.2e-23 112.5 110 57.3
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 3.7e-23 111.7 110 60.0
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 4.8e-23 111.3 112 58.9
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 4.8e-23 111.3 116 58.6
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 6.3e-23 110.9 110 60.9
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 8.2e-23 110.5 112 58.0
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 8.2e-23 110.5 110 58.2
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 8.2e-23 110.5 112 57.1
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.8e-22 109.4 111 56.8
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 1.8e-22 109.4 107 56.1
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.4e-22 109.0 110 60.9
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 4.1e-22 108.2 110 60.0
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.2e-21 106.7 111 60.4
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 5.9e-21 104.4 110 54.5
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 7.7e-21 104.0 110 55.5
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 7.7e-21 104.0 108 55.6
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 7.7e-21 104.0 111 58.6
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.3e-20 103.2 111 59.5
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 1.3e-20 103.2 109 52.3
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 2.9e-20 102.1 111 55.9
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 2.9e-20 102.1 110 53.6
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 3.8e-20 101.7 111 58.6
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 8.5e-20 100.5 111 53.2
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 1.1e-19 100.1 109 55.0
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.5e-19 99.8 113 53.1
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.5e-19 99.8 110 54.5
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 1.9e-19 99.4 111 51.4
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 1.9e-19 99.4 112 56.2
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 2.5e-19 99.0 110 54.5
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.2e-19 98.6 110 54.5
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 3.2e-19 98.6 111 55.9
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 9.4e-19 97.1 114 58.8
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 9.4e-19 97.1 113 53.1
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 9.4e-19 97.1 111 51.4
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 2.1e-18 95.9 110 50.0
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 2.1e-18 95.9 108 55.6
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 2.7e-18 95.5 110 51.8
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 2.7e-18 95.5 108 54.6
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 3.6e-18 95.1 111 53.2
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 3.6e-18 95.1 111 49.5
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 6.1e-18 94.4 110 51.8
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 8.0e-18 94.0 110 55.5
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 1.0e-17 93.6 97 58.8
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.4e-17 93.2 112 51.8
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.4e-17 93.2 112 51.8
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.8e-17 92.8 111 56.8
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 1.8e-17 92.8 112 53.6
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 3.0e-17 92.0 110 50.9
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.0e-17 92.0 113 51.3
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.0e-17 92.0 113 51.3
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 3.0e-17 92.0 114 53.5
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 5.2e-17 91.3 108 54.6
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.2e-16 90.1 108 51.9
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.2e-16 90.1 108 51.9
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 1.2e-16 90.1 109 50.5
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 1.2e-16 90.1 117 53.8
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 1.5e-16 89.7 111 51.4
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 2.0e-16 89.4 111 47.7
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 2.0e-16 89.4 111 48.6
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.6e-16 89.0 117 50.4
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 5.7e-16 87.8 112 48.2
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 5.7e-16 87.8 114 50.9
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 7.5e-16 87.4 112 46.4
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 7.5e-16 87.4 111 48.6
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 9.7e-16 87.0 96 56.2
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 1.3e-15 86.7 113 48.7
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 1.3e-15 86.7 110 49.1
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.7e-15 86.3 114 48.2
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.7e-15 86.3 108 50.9
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 2.2e-15 85.9 109 47.7
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.8e-15 85.5 111 48.6
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 2.8e-15 85.5 105 49.5
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 4.8e-15 84.7 110 50.0
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 4.8e-15 84.7 98 51.0
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 6.3e-15 84.3 109 48.6
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 8.2e-15 84.0 111 50.5
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 8.2e-15 84.0 110 50.9
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 8.2e-15 84.0 110 50.9
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.1e-14 83.6 111 47.7
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.1e-14 83.6 115 48.7
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 1.8e-14 82.8 115 44.3
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 1.8e-14 82.8 112 48.2
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 2.4e-14 82.4 112 47.3
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 2.4e-14 82.4 112 47.3
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 2.4e-14 82.4 112 47.3
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 2.4e-14 82.4 111 48.6
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 5.3e-14 81.3 112 46.4
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 5.3e-14 81.3 109 47.7
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 5.3e-14 81.3 107 50.5
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 5.3e-14 81.3 114 50.0
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 7.0e-14 80.9 99 53.5
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 7.0e-14 80.9 109 47.7
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 7.0e-14 80.9 110 50.0
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 7.0e-14 80.9 117 51.3
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 1.2e-13 80.1 107 49.5
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 1.2e-13 80.1 109 46.8
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 1.2e-13 80.1 109 46.8
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 1.2e-13 80.1 109 46.8
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.6e-13 79.7 112 48.2
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 1.6e-13 79.7 92 51.1
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 1.6e-13 79.7 107 47.7
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 2.0e-13 79.3 108 49.1
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 2.0e-13 79.3 109 45.9
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 2.0e-13 79.3 117 45.3
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.0e-13 79.3 111 44.1
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 2.0e-13 79.3 113 48.7
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 7.7e-13 77.4 109 45.9
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 7.7e-13 77.4 109 45.9
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 7.7e-13 77.4 111 47.7
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.0e-12 77.0 109 45.0
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.0e-12 77.0 63 65.1
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 1.3e-12 76.6 116 44.8
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.7e-12 76.3 117 46.2
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 2.2e-12 75.9 109 44.0
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.2e-12 75.9 113 49.6
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 5.0e-12 74.7 88 51.1
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 6.5e-12 74.3 110 44.5
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 6.5e-12 74.3 94 50.0
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 1.1e-11 73.6 113 42.5
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 1.1e-11 73.6 113 46.9
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 1.9e-11 72.8 97 53.6
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.9e-11 72.8 63 61.9
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 4.2e-11 71.6 109 43.1
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 4.2e-11 71.6 109 43.1
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 4.2e-11 71.6 115 44.3
Potri.001G265000 Populus trichocarpa HOM05D004268 ORTHO05D004958 7.2e-11 70.9 90 50.0
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 9.4e-11 70.5 124 43.5
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.6e-10 69.7 111 45.9
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 1.6e-10 69.7 98 46.9
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 3.6e-10 68.6 115 45.2
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 8.0e-10 67.4 111 42.3
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 1.4e-09 66.6 116 43.1
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 1.8e-09 66.2 110 42.7
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 5.2e-09 64.7 113 44.2
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 6.8e-09 64.3 96 44.8
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.5e-08 63.2 38 76.3
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.5e-08 63.2 108 44.4
CBR_g18875 Chara braunii HOM05D024154 ORTHO05D023530 2.6e-08 62.4 119 37.8
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 2.6e-08 62.4 124 40.3
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 3.4e-08 62.0 112 38.4
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 7.5e-08 60.8 113 39.8
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 7.5e-08 60.8 38 76.3
Zm00001eb245320 Zea mays HOM05D004268 ORTHO05D004958 9.8e-08 60.5 112 40.2
AagrBONN_evm.TU.Sc2ySwM_344.1747 Anthoceros agrestis HOM05D024154 ORTHO05D023530 2.8e-07 58.9 105 42.9
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 4.8e-07 58.2 112 42.0
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 6.3e-07 57.8 121 41.3
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 8.3e-07 57.4 111 41.4
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 3.1e-06 55.5 35 65.7
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 4.1e-06 55.1 112 35.7
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 4.1e-06 55.1 109 36.7
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 7.0e-06 54.3 40 67.5


User provided reference genes

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