Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 9.0e-187 656.8 328 100.0
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 4.2e-152 541.6 326 81.3
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 6.1e-151 537.7 328 79.9
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 6.1e-151 537.7 324 79.0
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 6.8e-150 534.3 324 78.4
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 3.4e-149 531.9 326 77.9
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 7.5e-149 530.8 323 78.3
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 1.7e-148 529.6 326 78.8
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 2.2e-148 529.3 324 79.0
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 8.3e-148 527.3 321 77.9
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 2.7e-146 522.3 324 77.5
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 3.5e-146 521.9 326 78.5
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 2.2e-145 519.2 324 76.2
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.9e-145 518.8 321 75.7
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 8.5e-145 517.3 326 77.6
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 8.5e-145 517.3 326 76.4
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 5.5e-144 514.6 328 77.1
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 5.5e-144 514.6 332 75.9
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 7.2e-144 514.2 321 74.8
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 9.4e-144 513.8 321 75.1
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 1.6e-143 513.1 321 76.0
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 1.6e-143 513.1 327 75.8
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.0e-142 510.4 322 75.8
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.0e-142 510.4 322 76.1
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.8e-142 509.6 326 75.5
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 3.4e-141 505.4 322 73.9
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 4.4e-141 505.0 325 75.1
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 5.7e-141 504.6 322 74.2
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 5.7e-141 504.6 328 74.4
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 7.5e-141 504.2 321 73.5
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.8e-140 502.3 322 74.8
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 2.8e-140 502.3 328 73.5
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 2.8e-140 502.3 328 73.8
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 4.9e-140 501.5 326 73.3
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.4e-139 500.0 328 74.4
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.8e-139 499.6 322 74.5
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 2.4e-139 499.2 326 73.6
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 4.1e-139 498.4 326 73.6
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 5.4e-139 498.0 327 73.7
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.4e-139 498.0 327 73.7
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 5.4e-139 498.0 324 73.1
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 1.2e-138 496.9 319 73.7
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.6e-138 496.5 327 73.4
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 2.0e-138 496.1 322 73.9
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 2.0e-138 496.1 322 74.5
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 2.7e-138 495.7 326 73.0
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 3.5e-138 495.4 328 74.1
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 5.9e-138 494.6 320 73.1
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 1.0e-137 493.8 324 72.2
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.7e-137 493.0 318 73.6
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 2.3e-137 492.7 325 71.1
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 3.8e-137 491.9 329 72.9
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 5.0e-137 491.5 322 73.9
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 8.6e-137 490.7 325 72.9
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 1.9e-136 489.6 322 73.0
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 2.5e-136 489.2 322 72.7
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 1.6e-135 486.5 324 72.2
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.6e-135 486.5 326 72.1
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 2.1e-135 486.1 322 72.4
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.1e-135 486.1 322 72.7
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.1e-135 486.1 326 71.2
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 6.1e-135 484.6 324 71.0
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.0e-134 483.8 321 72.9
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 2.0e-133 479.6 324 70.1
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 2.6e-133 479.2 277 85.6
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 4.4e-133 478.4 323 71.8
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 4.4e-133 478.4 321 71.7
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 5.7e-133 478.0 321 71.0
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 5.7e-133 478.0 326 72.4
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 3.7e-132 475.3 324 70.4
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 4.9e-132 474.9 305 74.8
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.8e-131 473.0 369 65.3
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 2.4e-131 472.6 319 70.5
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 5.4e-131 471.5 327 69.1
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 9.2e-131 470.7 329 70.2
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 2.0e-130 469.5 325 70.8
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 5.9e-130 468.0 321 69.2
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 6.6e-129 464.5 325 70.2
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 4.3e-128 461.8 307 71.3
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 1.6e-127 459.9 322 68.6
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.3e-126 456.1 326 68.7
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 2.6e-125 452.6 325 66.8
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 4.4e-125 451.8 325 67.1
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 5.8e-125 451.4 321 67.3
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.7e-124 449.9 325 65.5
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 2.2e-124 449.5 322 66.1
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 4.9e-124 448.4 325 67.1
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 8.3e-124 447.6 303 70.6
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 8.3e-124 447.6 329 66.9
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 9.2e-123 444.1 325 65.8
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 9.2e-123 444.1 325 64.9
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.0e-122 443.0 325 66.5
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 6.0e-122 441.4 264 80.7
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 1.0e-121 440.7 318 67.9
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.3e-121 440.3 320 68.1
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 3.9e-121 438.7 323 65.0
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 8.6e-121 437.6 325 63.7
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 1.1e-120 437.2 323 66.6
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 3.3e-120 435.6 323 64.1
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 4.3e-120 435.3 325 64.6
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.8e-119 432.6 292 73.3
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 4.7e-119 431.8 323 63.2
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 1.8e-118 429.9 324 63.9
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 2.3e-118 429.5 417 57.1
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 4.0e-118 428.7 324 64.2
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.5e-117 426.8 374 59.4
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 3.4e-117 425.6 324 63.6
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 1.7e-116 423.3 325 63.7
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 4.1e-115 418.7 255 80.4
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 8.1e-111 404.4 294 66.7
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.1e-107 394.0 330 61.8
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.4e-107 392.9 321 61.7
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 7.8e-106 387.9 323 61.6
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 1.0e-105 387.5 323 57.3
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 1.7e-105 386.7 683 37.2
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 6.6e-105 384.8 324 58.0
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 1.1e-104 384.0 544 41.5
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.3e-104 381.3 329 62.0
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 1.1e-102 377.5 287 64.8
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 1.2e-98 364.0 282 65.2
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 6.9e-94 348.2 263 63.1
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.3e-92 344.0 256 66.8
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 2.4e-91 339.7 308 54.9
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 3.5e-90 335.9 310 52.9
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 7.9e-90 334.7 310 52.6
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 1.3e-89 334.0 220 70.9
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 3.1e-86 322.8 230 66.1
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.2e-84 316.6 202 76.2
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 1.1e-83 314.3 306 52.3
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.3e-76 290.8 184 77.7
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 1.6e-74 283.9 221 63.8
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.0e-57 228.0 303 38.9
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 1.8e-49 200.7 198 47.5
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 2.2e-39 167.2 96 83.3
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 2.2e-36 157.1 99 74.7
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 6.8e-33 145.6 99 71.7
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.2e-32 144.8 93 71.0
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.4e-32 143.3 93 71.0
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.4e-30 137.1 75 78.7
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.2e-28 130.6 86 73.3
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 8.5e-28 128.6 117 57.3
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 2.8e-26 123.6 327 26.9
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 4.1e-22 109.8 81 60.5
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 2.7e-21 107.1 71 71.8
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 4.9e-15 86.3 60 65.0
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 1.2e-10 71.6 49 71.4
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 1.2e-10 71.6 49 71.4
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 1.6e-10 71.2 48 72.9
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.1e-10 70.9 43 74.4
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 8.0e-10 68.9 69 53.6
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.3e-09 67.4 56 55.4
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 8.3e-07 58.9 80 41.2


User provided reference genes

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