Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 0.0e+00 1107.4 587 100.0
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 8.4e-260 900.2 572 82.9
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 7.1e-259 897.1 575 83.8
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 4.8e-255 884.4 573 82.4
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 8.1e-255 883.6 572 82.0
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 9.0e-254 880.2 570 81.8
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 4.2e-251 871.3 569 80.1
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 9.3e-251 870.2 581 78.8
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 7.9e-250 867.1 572 80.8
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 3.9e-249 864.8 567 80.8
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 6.7e-249 864.0 570 79.6
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 1.6e-247 859.4 570 79.1
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.4e-246 856.3 570 78.8
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.4e-246 856.3 570 78.9
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 2.4e-246 855.5 542 82.8
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 3.1e-246 855.1 572 79.7
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 4.0e-246 854.7 572 78.5
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 4.0e-246 854.7 570 78.9
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 5.3e-246 854.4 575 79.0
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 9.0e-246 853.6 583 77.2
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 2.0e-245 852.4 575 78.3
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 2.2e-244 849.0 568 78.9
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 1.4e-243 846.3 573 78.5
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 2.5e-243 845.5 568 79.2
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 3.2e-243 845.1 572 78.5
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 3.2e-243 845.1 571 78.1
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 2.1e-242 842.4 569 78.4
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 4.6e-242 841.3 569 78.6
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 7.9e-242 840.5 575 76.9
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.8e-241 839.3 574 77.7
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 1.8e-241 839.3 575 77.2
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 3.0e-241 838.6 566 77.7
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 3.9e-241 838.2 567 78.8
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 5.1e-241 837.8 569 76.4
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 8.7e-241 837.0 575 76.5
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 8.7e-241 837.0 569 76.6
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 1.1e-240 836.6 582 76.1
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.1e-240 836.6 575 76.0
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 2.5e-240 835.5 568 78.3
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.3e-240 835.1 571 77.6
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 5.7e-240 834.3 566 77.6
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 7.4e-240 833.9 571 78.5
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 4.8e-239 831.2 571 77.9
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 6.2e-239 830.9 580 74.7
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 1.4e-238 829.7 576 75.9
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 4.1e-238 828.2 572 76.9
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 4.1e-238 828.2 582 75.9
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 6.9e-238 827.4 571 76.2
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 9.0e-238 827.0 580 74.8
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 1.5e-237 826.2 580 75.0
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 4.5e-237 824.7 580 74.7
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.5e-237 824.7 571 76.5
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 7.6e-237 823.9 568 77.5
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 7.6e-237 823.9 571 76.5
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 7.6e-237 823.9 605 72.9
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.0e-236 823.5 582 74.2
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 2.2e-236 822.4 574 77.0
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.8e-236 821.6 571 75.8
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 5.0e-236 821.2 571 76.0
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 1.1e-235 820.1 582 75.3
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 1.9e-235 819.3 572 76.0
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 5.5e-235 817.8 542 79.7
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 5.5e-235 817.8 566 76.5
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 9.3e-235 817.0 574 76.3
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.3e-233 813.1 674 66.6
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 2.3e-233 812.4 593 75.0
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 2.3e-233 812.4 567 76.0
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 3.0e-233 812.0 572 75.0
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 1.1e-232 810.1 567 75.0
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.5e-232 809.7 487 86.0
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 2.5e-232 808.9 574 75.8
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 7.4e-232 807.4 575 74.8
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.3e-231 806.6 570 75.3
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.8e-231 805.4 571 76.9
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 6.3e-231 804.3 570 74.6
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 6.3e-231 804.3 578 73.5
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 6.3e-231 804.3 674 65.1
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 8.2e-231 803.9 570 74.4
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 9.0e-230 800.4 575 73.9
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 1.5e-229 799.7 570 74.4
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 2.0e-229 799.3 575 73.7
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 3.4e-229 798.5 567 73.5
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 5.9e-229 797.7 571 73.9
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 5.9e-229 797.7 554 76.5
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 1.3e-228 796.6 572 74.1
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 3.8e-228 795.0 572 75.3
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 6.5e-228 794.3 577 73.8
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 6.5e-228 794.3 568 73.8
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 1.4e-227 793.1 574 74.9
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 1.4e-227 793.1 570 73.3
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 1.9e-227 792.7 567 73.4
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.9e-227 792.7 545 76.5
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 5.5e-227 791.2 575 73.7
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 1.2e-226 790.0 571 73.9
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 1.6e-226 789.6 561 74.7
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 2.1e-226 789.3 571 74.3
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 2.7e-226 788.9 567 73.2
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 4.6e-226 788.1 571 73.9
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 6.1e-226 787.7 569 73.1
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 6.1e-226 787.7 570 73.9
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 2.3e-225 785.8 568 73.6
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 3.0e-225 785.4 573 72.8
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.9e-225 785.0 569 73.5
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 5.7e-224 781.2 573 72.8
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 9.7e-224 780.4 572 72.6
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 1.3e-223 780.0 569 72.9
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.7e-223 779.6 570 72.5
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 2.2e-223 779.2 571 72.7
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 3.7e-223 778.5 570 73.0
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 1.8e-222 776.2 557 74.5
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 3.0e-217 758.8 544 75.7
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 5.1e-217 758.1 570 73.0
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 1.5e-216 756.5 566 71.6
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 2.6e-216 755.7 487 80.3
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.7e-212 743.0 557 70.2
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 2.9e-212 742.3 565 70.1
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 5.2e-201 704.9 508 74.6
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 2.8e-199 699.1 575 65.9
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 3.7e-199 698.7 581 67.5
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.6e-192 676.0 578 64.5
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.4e-190 669.5 447 78.3
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 5.4e-190 668.3 504 71.0
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.1e-174 615.5 455 71.0
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 3.6e-170 602.4 409 80.0
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 8.1e-162 574.7 380 78.7
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 1.2e-160 570.9 483 67.9
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 1.1e-158 564.3 503 61.8
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.6e-144 516.5 577 56.7
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 7.4e-139 498.4 324 80.2
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 9.0e-137 491.5 577 49.0
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 3.5e-133 479.6 348 72.7
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.4e-121 440.3 376 67.8
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.2e-120 438.0 309 77.3
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 5.1e-116 422.5 252 85.7
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.2e-112 411.4 494 48.6
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 2.0e-99 367.5 547 43.7
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 4.1e-97 359.8 230 78.7
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.3e-90 338.2 228 82.0
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.0e-80 304.3 226 72.6
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 5.9e-64 249.6 268 51.1
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 2.3e-60 237.7 318 43.4
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 7.8e-56 222.6 186 64.5
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 2.9e-50 204.1 114 87.7
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 3.0e-47 194.1 266 43.2
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 1.1e-44 185.7 130 71.5
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 4.6e-32 143.7 137 59.1
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 3.1e-28 131.0 107 60.7
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 3.1e-28 131.0 204 43.6
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 1.9e-25 121.7 105 60.0
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 4.3e-22 110.5 179 43.6
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.1e-17 95.9 50 86.0
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.1e-17 95.9 52 92.3
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.1e-17 95.9 52 92.3
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 2.7e-16 91.3 102 52.9
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 7.4e-14 83.2 52 82.7
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 8.2e-13 79.7 60 68.3
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 4.9e-10 70.5 57 57.9
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 9.3e-09 66.2 30 100.0
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 9.3e-09 66.2 30 100.0
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 3.0e-07 61.2 61 54.1
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 3.0e-07 61.2 61 54.1
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 1.1e-06 59.3 51 68.6
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 2.5e-06 58.2 61 52.5
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 3.3e-06 57.8 53 47.2
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 4.3e-06 57.4 77 46.8
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 5.7e-06 57.0 58 58.6


User provided reference genes

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