Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1326 Trochodendron aralioides HOM05D006340 ORTHO05D007568 1.7e-261 906.0 641 100.0
TAR362G0132 Trochodendron aralioides HOM05D006340 ORTHO05D007568 4.7e-179 632.1 664 80.7
QL03p014074 Quercus lobata HOM05D006340 ORTHO05D007568 4.1e-135 486.1 665 69.9
Nn3g21728 Nelumbo nucifera HOM05D006340 ORTHO05D007568 1.5e-132 477.6 646 70.9
CSS0010691 Camellia sinensis var. sinensis HOM05D006340 ORTHO05D007568 4.3e-132 476.1 674 67.7
MBI18_g32031_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 9.8e-129 464.9 678 54.6
Cfa006707 Carpinus fangiana HOM05D006340 ORTHO05D007568 6.4e-128 462.2 663 68.8
Haze_04056 Corylus avellana HOM05D006340 ORTHO05D007568 4.0e-122 443.0 665 64.4
MBI19_g03242_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 9.2e-119 431.8 652 57.8
Actinidia35518 Actinidia chinensis HOM05D006340 ORTHO05D007568 1.0e-117 428.3 656 67.2
Potri.013G008200 Populus trichocarpa HOM05D006340 ORTHO05D007568 1.1e-116 424.9 659 66.2
Hma1.2p1_0008F-1.1_g005560 Hydrangea macrophylla HOM05D006340 ORTHO05D007568 1.5e-116 424.5 664 68.5
Aqoxy2G02721 Aquilegia oxysepala HOM05D006340 ORTHO05D007568 2.5e-116 423.7 646 67.0
CiPaw.07G030100 Carya illinoinensis HOM05D006340 ORTHO05D007568 9.5e-116 421.8 664 67.0
Actinidia16863 Actinidia chinensis HOM05D006340 ORTHO05D007568 6.2e-115 419.1 687 55.6
Atru.chr2.357 Acer truncatum HOM05D006340 ORTHO05D007568 1.3e-112 411.4 662 64.5
CsaV3_2G007150 Cucumis sativus L. HOM05D006340 ORTHO05D007568 3.8e-112 409.8 639 66.0
TWI36G0703 Tripterygium wilfordii HOM05D006340 ORTHO05D007568 6.4e-112 409.1 650 67.1
Prupe.6G312400 Prunus persica HOM05D006340 ORTHO05D007568 1.2e-110 404.8 672 64.3
PSO761G0363 Papaver somniferum HOM05D006340 ORTHO05D007568 2.7e-110 403.7 640 67.2
Dinv30898 Davidia involucrata HOM05D006340 ORTHO05D007568 3.5e-110 403.3 663 46.8
Potri.005G013000 Populus trichocarpa HOM05D006340 ORTHO05D007568 1.0e-109 401.7 647 65.5
Sed0017369 Sechium edule HOM05D006340 ORTHO05D007568 8.7e-109 398.7 646 64.7
ClCG02G014860 Citrullus lanatus HOM05D006340 ORTHO05D007568 1.5e-108 397.9 666 49.5
Thecc.05G323700 Theobroma cacao HOM05D006340 ORTHO05D007568 1.5e-108 397.9 666 63.5
Ciclev10000538m.g Citrus clementina HOM05D006340 ORTHO05D007568 2.8e-107 393.7 646 65.3
GSVIVG01031248001 Vitis vinifera HOM05D006340 ORTHO05D007568 1.1e-106 391.7 656 65.1
Sed0011043 Sechium edule HOM05D006340 ORTHO05D007568 1.4e-106 391.3 655 64.6
Sabra13G0006900 Salix brachista HOM05D006340 ORTHO05D007568 4.0e-106 389.8 665 54.6
Duzib177G0712 Durio zibethinus HOM05D006340 ORTHO05D007568 6.4e-104 382.5 657 63.0
Cpa.g.sc48.167 Carica papaya HOM05D006340 ORTHO05D007568 2.4e-103 380.6 648 64.2
MD00G1208300 Malus domestica HOM05D006340 ORTHO05D007568 1.2e-102 378.3 663 62.9
Lju926C5T2 Lonicera japonica HOM05D006340 ORTHO05D007568 1.0e-101 375.2 646 59.9
MELO3C004178.2 Cucumis melo HOM05D006340 ORTHO05D007568 3.0e-101 373.6 650 53.2
CiPaw.08G154900 Carya illinoinensis HOM05D006340 ORTHO05D007568 2.8e-99 367.1 661 64.3
Glyma.20G096700 Glycine max HOM05D006340 ORTHO05D007568 4.8e-99 366.3 653 62.8
Glyma.10G146700 Glycine max HOM05D006340 ORTHO05D007568 8.1e-99 365.5 653 62.8
DCAR_025287 Daucus carota HOM05D006340 ORTHO05D007568 2.6e-97 360.5 665 61.7
Phvul.007G201700 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 5.8e-97 359.4 655 62.1
Gohir.D11G284300 Gossypium hirsutum HOM05D006340 ORTHO05D007568 7.6e-97 359.0 646 62.7
Medtr1g084120 Medicago truncatula HOM05D006340 ORTHO05D007568 2.9e-96 357.1 650 58.8
COL.COLO4_05545 Corchorus olitorius HOM05D006340 ORTHO05D007568 1.1e-95 355.1 653 62.8
Manes.09G177400 Manihot esculenta HOM05D006340 ORTHO05D007568 1.4e-95 354.8 666 55.9
Duzib128G1170 Durio zibethinus HOM05D006340 ORTHO05D007568 1.9e-95 354.4 645 63.1
arahy.Tifrunner.gnm1.ann1.31L8TN Arachis hypogaea HOM05D006340 ORTHO05D007568 4.6e-94 349.7 655 61.8
PSO210G6591 Papaver somniferum HOM05D006340 ORTHO05D007568 6.0e-94 349.4 543 71.5
arahy.Tifrunner.gnm1.ann1.35WTTC Arachis hypogaea HOM05D006340 ORTHO05D007568 8.7e-93 345.5 655 61.5
MD12G1205300 Malus domestica HOM05D006340 ORTHO05D007568 8.7e-93 345.5 665 60.8
Ca_10176_v3 Cicer arietinum L. HOM05D006340 ORTHO05D007568 6.2e-91 339.3 653 60.9
Lsat_1_v5_gn_5_40480 Lactuca sativa HOM05D006340 ORTHO05D007568 8.1e-91 339.0 638 62.4
Lj5C328T5 Lonicera japonica HOM05D006340 ORTHO05D007568 1.4e-90 338.2 649 58.6
Cc02_g35160 Coffea canephora HOM05D006340 ORTHO05D007568 3.1e-90 337.0 656 57.3
Gorai.007G307200 Gossypium raimondii HOM05D006340 ORTHO05D007568 4.0e-90 336.7 646 61.8
Rhsim11G0096500 Rhododendron simsii HOM05D006340 ORTHO05D007568 4.0e-90 336.7 663 57.2
CANSAT54G2981 Cannabis sativa HOM05D006340 ORTHO05D007568 1.2e-89 335.1 651 61.3
Sabra05G0021400 Salix brachista HOM05D006340 ORTHO05D007568 2.0e-89 334.3 687 39.7
TPR.G2586 Trifolium pratense HOM05D006340 ORTHO05D007568 1.7e-88 331.3 671 59.8
VMungo0720G2454 Vigna mungo HOM05D006340 ORTHO05D007568 1.7e-88 331.3 642 61.1
Os01g0300900 Oryza sativa ssp. japonica HOM05D006340 ORTHO05D007568 3.8e-88 330.1 650 55.5
AUR62006742 Chenopodium quinoa HOM05D006340 ORTHO05D007568 5.5e-87 326.2 648 61.7
ATR0693G206 Amborella trichopoda HOM05D006340 ORTHO05D007568 3.5e-86 323.6 656 61.1
vmacro01568 Vaccinium macrocarpon HOM05D006340 ORTHO05D007568 3.5e-86 323.6 659 50.5
ECA246G2180 Erigeron canadensis HOM05D006340 ORTHO05D007568 1.3e-85 321.6 634 63.2
Dinv24462 Davidia involucrata HOM05D006340 ORTHO05D007568 1.8e-85 321.2 365 54.2
Lalb_Chr02g0147781 Lupinus albus HOM05D006340 ORTHO05D007568 3.9e-85 320.1 646 58.5
Lj5g0007706 Lotus japonicus HOM05D006340 ORTHO05D007568 8.7e-85 318.9 653 57.9
HanXRQChr11g0324231 Helianthus annuus HOM05D006340 ORTHO05D007568 1.1e-84 318.5 633 62.7
AUR62000387 Chenopodium quinoa HOM05D006340 ORTHO05D007568 1.9e-84 317.8 647 61.4
Gohir.A08G205400 Gossypium hirsutum HOM05D006340 ORTHO05D007568 1.3e-83 315.1 654 59.8
Gorai.004G236300 Gossypium raimondii HOM05D006340 ORTHO05D007568 2.8e-83 313.9 648 60.8
Zm00001eb340330 Zea mays HOM05D006340 ORTHO05D007568 9.0e-82 308.9 653 57.0
Zm00001eb130130 Zea mays HOM05D006340 ORTHO05D007568 1.7e-80 304.7 654 51.8
RcHm_v2.0_Chr3g0457201 Rosa chinensis HOM05D006340 ORTHO05D007568 6.5e-80 302.8 674 57.3
PGR031G1700 Punica granatum HOM05D006340 ORTHO05D007568 8.4e-80 302.4 648 60.2
Gohir.D08G222500 Gossypium hirsutum HOM05D006340 ORTHO05D007568 5.5e-79 299.7 644 59.6
Phvul.001G224800 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 3.5e-78 297.0 653 59.3
Glyma.03G231000 Glycine max HOM05D006340 ORTHO05D007568 3.9e-77 293.5 654 59.9
PGSC0003DMG400002763 Solanum tuberosum HOM05D006340 ORTHO05D007568 5.1e-77 293.1 666 59.2
CAN.G1076.21 Capsicum annuum HOM05D006340 ORTHO05D007568 1.1e-76 292.0 648 55.4
Glyma.19G228200 Glycine max HOM05D006340 ORTHO05D007568 1.6e-75 288.1 650 59.7
DCAR_029344 Daucus carota HOM05D006340 ORTHO05D007568 4.8e-75 286.6 638 44.7
Nitab4.5_0004525g0020 Nicotiana tabacum HOM05D006340 ORTHO05D007568 1.1e-74 285.4 661 54.3
Sopen01g044100 Solanum pennellii HOM05D006340 ORTHO05D007568 1.4e-74 285.0 657 58.4
Eucgr.H03294 Eucalyptus grandis HOM05D006340 ORTHO05D007568 1.8e-74 284.6 646 59.3
Nitab4.5_0001338g0100 Nicotiana tabacum HOM05D006340 ORTHO05D007568 1.2e-73 282.0 685 52.6
Hund07311 Selenicereus undatus HOM05D006340 ORTHO05D007568 2.2e-72 277.7 631 58.5
EL10Ac4g09463 Beta vulgaris HOM05D006340 ORTHO05D007568 5.5e-71 273.1 653 58.8
VMungo1383G0056 Vigna mungo HOM05D006340 ORTHO05D007568 9.4e-71 272.3 652 57.5
Oeu053742.1 Olea europaea HOM05D006340 ORTHO05D007568 2.7e-70 270.8 663 56.0
Psat6g152600 Pisum sativum HOM05D006340 ORTHO05D007568 2.7e-70 270.8 511 51.7
HPP92_005420 Vanilla planifolia HOM05D006340 ORTHO05D007568 7.4e-68 262.7 674 56.5
FvH4_6g07501 Fragaria vesca HOM05D006340 ORTHO05D007568 4.8e-67 260.0 685 55.2
FAN14G3207 Fragaria x ananassa HOM05D006340 ORTHO05D007568 5.3e-66 256.5 683 54.9
FAN02G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 1.5e-65 255.0 683 55.3
Oeu052936.1 Olea europaea HOM05D006340 ORTHO05D007568 2.6e-65 254.2 663 54.0
Ah.06g195990 Amaranthus hybridus HOM05D006340 ORTHO05D007568 3.4e-65 253.8 638 56.0
Migut.N00937 Erythranthe guttata HOM05D006340 ORTHO05D007568 5.5e-63 246.5 652 51.8
arahy.Tifrunner.gnm1.ann1.Y7QP4L Arachis hypogaea HOM05D006340 ORTHO05D007568 1.1e-58 232.3 545 56.9
THA.LOC104816894 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 7.7e-57 226.1 641 47.0
Sabra05G0020800 Salix brachista HOM05D006340 ORTHO05D007568 3.0e-53 214.2 327 68.5
Solyc01g100600.4 Solanum lycopersicum HOM05D006340 ORTHO05D007568 5.3e-50 203.4 500 50.0
Sabra05G0020900 Salix brachista HOM05D006340 ORTHO05D007568 7.7e-49 199.5 274 47.8
arahy.Tifrunner.gnm1.ann1.9H9EE5 Arachis hypogaea HOM05D006340 ORTHO05D007568 8.5e-48 196.1 545 44.0
Sabra05G0009200 Salix brachista HOM05D006340 ORTHO05D007568 5.5e-47 193.4 206 84.0
CDE08G0055 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 2.1e-46 191.4 470 50.4
Gohir.A11G274100 Gossypium hirsutum HOM05D006340 ORTHO05D007568 5.2e-45 186.8 506 48.8
Peaxi162Scf01061g00014 Petunia axillaris HOM05D006340 ORTHO05D007568 2.0e-44 184.9 521 32.8
PSO541G0443 Papaver somniferum HOM05D006340 ORTHO05D007568 1.1e-42 179.1 261 45.6
FAN09G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 1.8e-42 178.3 526 47.9
CDE02G0367 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 7.7e-41 172.9 622 44.2
Sc16g0009070 Simmondsia chinensis HOM05D006340 ORTHO05D007568 1.5e-39 168.7 487 48.0
SGA_v2.0_scaffold5G02892 Striga asiatica HOM05D006340 ORTHO05D007568 2.5e-39 167.9 654 38.5
MSTRG.27938 Avicennia marina HOM05D006340 ORTHO05D007568 6.8e-37 159.8 355 35.2
MSTRG.27937 Avicennia marina HOM05D006340 ORTHO05D007568 4.1e-34 150.6 199 74.4
Dinv24463 Davidia involucrata HOM05D006340 ORTHO05D007568 1.2e-33 149.1 177 85.9
Sabra05G0022400 Salix brachista HOM05D006340 ORTHO05D007568 4.5e-33 147.1 228 42.1
SalBow3G0642 Salvia bowleyana HOM05D006340 ORTHO05D007568 6.6e-32 143.3 269 38.3
unitig_52.g17414 Utricularia gibba HOM05D006340 ORTHO05D007568 4.9e-27 127.1 246 48.0
SMO115G0101 Selaginella moellendorffii HOM05D006340 ORTHO05D007568 4.3e-23 114.0 651 33.9
THA.LOC104824492 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 5.8e-20 103.6 64 68.8
FAN05G4753 Fragaria x ananassa HOM05D006340 ORTHO05D007568 2.0e-17 95.1 404 46.5
MBI18_g03639_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 7.5e-12 76.6 73 54.8
ECA169G0006 Erigeron canadensis HOM05D006340 ORTHO05D007568 9.8e-12 76.3 60 58.3
AagrBONN_evm.TU.Sc2ySwM_117.2646 Anthoceros agrestis HOM05D001137 ORTHO05D007568 4.1e-10 70.9 206 25.2
Lj5A256T13 Lonicera japonica HOM05D001137 ORTHO05D001967 3.3e-07 61.2 53 47.2
SMO171G0124 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 7.3e-07 60.1 46 54.3
CBR_g42082 Chara braunii HOM05D003320 ORTHO05D003941 9.5e-07 59.7 47 48.9
SMO201G0046 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 9.5e-07 59.7 46 47.8
FvH4_7g06590 Fragaria vesca HOM05D001137 ORTHO05D001967 1.2e-06 59.3 55 43.6
FAN06G0232 Fragaria x ananassa HOM05D001137 ORTHO05D001967 1.2e-06 59.3 55 43.6
FAN10G1487 Fragaria x ananassa HOM05D001137 ORTHO05D001967 1.2e-06 59.3 55 43.6
Potri.008G031200 Populus trichocarpa HOM05D001137 ORTHO05D001967 1.2e-06 59.3 53 47.2
Sabra08G0020600 Salix brachista HOM05D001137 ORTHO05D001967 1.2e-06 59.3 53 47.2
SMO022G0002 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.2e-06 59.3 48 50.0
SMO228G0070 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.2e-06 59.3 46 47.8
BcaB05g24833 Brassica carinata HOM05D003320 ORTHO05D003941 1.6e-06 58.9 55 36.4
PSO017G6858 Papaver somniferum HOM05D003320 ORTHO05D003941 1.6e-06 58.9 46 47.8
PSO478G2958 Papaver somniferum HOM05D003320 ORTHO05D003941 1.6e-06 58.9 46 47.8
Potri.010G230300 Populus trichocarpa HOM05D001137 ORTHO05D001967 1.6e-06 58.9 53 47.2
Sabra10G0178700 Salix brachista HOM05D001137 ORTHO05D001967 1.6e-06 58.9 53 47.2
MBI16_g10850_MAGBIO Magnolia biondii HOM05D003320 ORTHO05D003941 2.1e-06 58.5 46 47.8
SMO199G0080 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 2.1e-06 58.5 46 47.8
SMO274G0045 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 2.1e-06 58.5 46 47.8
Mapoly0031s0090 Marchantia polymorpha HOM05D003320 ORTHO05D003941 2.8e-06 58.2 47 46.8
HPP92_006046 Vanilla planifolia HOM05D003320 ORTHO05D003941 2.8e-06 58.2 52 42.3
HanXRQChr16g0502481 Helianthus annuus HOM05D003320 ORTHO05D003941 3.6e-06 57.8 45 46.7
Lsat_1_v5_gn_4_110741 Lactuca sativa HOM05D003320 ORTHO05D003941 3.6e-06 57.8 44 47.7
Lj5A258T11 Lonicera japonica HOM05D001137 ORTHO05D001967 3.6e-06 57.8 52 46.2
SGA_v2.0_scaffold176G39381 Striga asiatica HOM05D001137 ORTHO05D001967 4.7e-06 57.4 48 45.8
CARHR067300 Cardamine hirsuta HOM05D003320 ORTHO05D003941 6.2e-06 57.0 56 42.9
Psat4g047520 Pisum sativum HOM05D003320 ORTHO05D003941 6.2e-06 57.0 43 51.2
TWI12G0524 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 6.2e-06 57.0 55 41.8
ECA232G1579 Erigeron canadensis HOM05D003320 ORTHO05D003941 8.1e-06 56.6 44 45.5
FAN03G0121 Fragaria x ananassa HOM05D001137 ORTHO05D001967 8.1e-06 56.6 55 43.6
Lsat_1_v5_gn_9_87501 Lactuca sativa HOM05D001137 ORTHO05D001967 8.1e-06 56.6 55 41.8
Manes.10G052700 Manihot esculenta HOM05D001137 ORTHO05D001967 8.1e-06 56.6 53 43.4
Medtr7g113200 Medicago truncatula HOM05D001137 ORTHO05D001967 8.1e-06 56.6 191 23.0
Pp3c16_23230 Physcomitrium patens HOM05D003320 ORTHO05D003941 8.1e-06 56.6 45 48.9
SMO125G0002 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 8.1e-06 56.6 46 45.7


User provided reference genes

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