Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.9e-120 435.3 224 100.0
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 1.4e-69 266.9 176 79.5
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.0e-69 265.4 176 77.8
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 1.1e-66 257.3 173 76.9
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 1.2e-65 253.8 173 77.5
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.0e-64 250.8 176 75.6
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 2.3e-64 249.6 176 75.6
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 2.3e-64 249.6 173 75.1
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 3.0e-64 249.2 171 73.7
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 3.0e-64 249.2 171 73.7
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 1.5e-63 246.9 174 74.7
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 1.9e-63 246.5 173 71.1
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.9e-63 246.5 174 74.7
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 2.5e-63 246.1 178 71.3
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 3.3e-63 245.7 170 73.5
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.3e-63 245.7 173 76.9
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 4.7e-62 241.9 173 73.4
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 6.2e-62 241.5 180 66.7
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 8.1e-62 241.1 176 73.3
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.8e-61 240.0 180 68.9
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 3.1e-61 239.2 174 70.1
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 8.9e-61 237.7 175 72.0
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.5e-60 236.9 173 72.3
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 3.4e-60 235.7 183 67.8
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 9.9e-60 234.2 178 66.9
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 2.2e-59 233.0 166 71.7
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 4.9e-59 231.9 144 78.5
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.4e-58 230.3 179 69.8
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 1.9e-58 229.9 174 67.8
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 3.2e-58 229.2 178 69.1
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 1.6e-57 226.9 143 75.5
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.1e-57 226.5 175 68.0
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 4.6e-57 225.3 174 66.7
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.3e-56 223.8 175 66.9
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.7e-56 223.4 175 67.4
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.7e-56 223.4 171 69.6
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 1.7e-56 223.4 149 75.8
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 3.0e-56 222.6 170 68.8
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 6.6e-56 221.5 176 67.0
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.5e-55 220.3 174 67.8
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 4.3e-55 218.8 169 70.4
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.6e-54 216.9 170 67.6
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 2.1e-54 216.5 177 68.9
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 2.1e-54 216.5 171 65.5
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 4.7e-54 215.3 165 69.1
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.2e-54 214.9 170 67.1
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 8.1e-54 214.5 175 65.7
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 8.1e-54 214.5 176 69.3
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.4e-53 213.8 181 64.6
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 1.8e-53 213.4 189 61.4
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 1.8e-53 213.4 172 66.3
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.8e-53 213.4 168 69.0
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 1.8e-53 213.4 163 69.3
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 4.0e-53 212.2 163 69.9
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 4.0e-53 212.2 182 66.5
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.2e-53 211.8 160 69.4
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.2e-53 211.8 175 65.1
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 8.9e-53 211.1 158 71.5
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 8.9e-53 211.1 158 71.5
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 1.2e-52 210.7 173 65.9
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.2e-52 210.7 150 72.0
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.2e-52 210.7 150 72.0
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 1.2e-52 210.7 173 63.6
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 1.5e-52 210.3 129 82.9
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.5e-52 210.3 175 64.6
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 3.4e-52 209.1 174 65.5
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 4.4e-52 208.8 161 67.7
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 4.4e-52 208.8 169 68.0
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 4.4e-52 208.8 180 66.7
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 4.4e-52 208.8 182 64.3
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 1.7e-51 206.8 181 60.8
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 2.2e-51 206.5 150 73.3
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 2.2e-51 206.5 161 68.9
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 2.9e-51 206.1 137 78.1
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 2.9e-51 206.1 156 69.9
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 6.4e-51 204.9 142 75.4
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 8.4e-51 204.5 177 65.5
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 3.2e-50 202.6 168 64.3
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 7.1e-50 201.4 133 78.2
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 1.2e-49 200.7 176 64.8
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 1.6e-49 200.3 182 61.5
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 4.6e-49 198.7 162 63.6
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 4.6e-49 198.7 162 63.6
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 4.6e-49 198.7 159 66.0
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 2.3e-48 196.4 167 67.1
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 3.0e-48 196.1 158 64.6
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 3.9e-48 195.7 158 65.8
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 6.6e-48 194.9 169 67.5
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 8.7e-48 194.5 120 80.8
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.9e-47 193.4 158 63.3
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.9e-47 193.4 170 61.8
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 2.5e-47 193.0 173 64.2
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 7.3e-47 191.4 217 53.5
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 7.3e-47 191.4 189 59.8
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 1.6e-46 190.3 178 61.2
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 2.1e-46 189.9 177 60.5
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.1e-46 189.9 180 61.1
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 2.8e-46 189.5 156 64.7
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 6.2e-46 188.3 159 65.4
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 6.2e-46 188.3 165 62.4
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 8.1e-46 188.0 176 60.2
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 1.1e-45 187.6 160 65.0
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.4e-45 187.2 173 61.8
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 3.1e-45 186.0 140 71.4
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 9.0e-45 184.5 187 58.3
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 1.2e-44 184.1 155 65.2
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 2.0e-44 183.3 142 69.0
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 2.6e-44 183.0 167 62.9
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 5.8e-44 181.8 177 58.8
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 1.7e-43 180.3 150 62.7
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 2.2e-43 179.9 139 67.6
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 8.4e-43 177.9 177 56.5
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 8.4e-43 177.9 139 69.8
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 2.4e-42 176.4 142 66.2
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 7.1e-42 174.9 157 61.8
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 9.3e-42 174.5 130 68.5
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 9.3e-42 174.5 167 61.1
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.6e-41 173.7 133 69.2
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 2.7e-41 172.9 154 60.4
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 2.7e-41 172.9 140 65.7
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 3.5e-41 172.6 150 61.3
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 3.5e-41 172.6 162 58.0
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 4.6e-41 172.2 122 72.1
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 6.0e-41 171.8 126 70.6
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 6.0e-41 171.8 139 65.5
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 7.9e-41 171.4 126 71.4
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 2.3e-40 169.9 120 73.3
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 2.3e-40 169.9 156 62.8
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 2.3e-40 169.9 159 59.1
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 2.3e-40 169.9 149 62.4
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 3.0e-40 169.5 126 70.6
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 6.6e-40 168.3 160 61.2
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 4.3e-39 165.6 121 70.2
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 7.4e-39 164.9 129 67.4
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 7.4e-39 164.9 126 69.8
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 9.6e-39 164.5 121 69.4
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 9.6e-39 164.5 121 69.4
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.3e-38 164.1 156 59.0
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.3e-38 164.1 120 67.5
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.8e-38 162.9 135 65.9
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.1e-37 161.0 156 59.0
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 1.8e-37 160.2 120 69.2
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 4.0e-37 159.1 108 74.1
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 4.0e-37 159.1 116 63.8
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 1.5e-36 157.1 136 61.0
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 2.6e-36 156.4 115 69.6
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 7.6e-36 154.8 137 62.0
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.3e-35 154.1 158 54.4
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.7e-35 153.7 136 61.0
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.6e-33 147.1 125 61.6
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 9.6e-31 137.9 85 77.6
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 9.6e-31 137.9 85 77.6
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 1.1e-29 134.4 139 56.1
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 3.1e-29 132.9 148 54.7
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 8.4e-27 124.8 79 74.7
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 1.4e-26 124.0 88 70.5
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.4e-26 124.0 135 50.4
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 7.1e-26 121.7 81 79.0
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 8.7e-24 114.8 104 67.3
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 8.2e-22 108.2 134 47.8
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 9.0e-21 104.8 76 72.4
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 9.7e-15 84.7 174 40.2
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 2.8e-14 83.2 151 37.1
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 1.9e-10 70.5 40 77.5
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 7.2e-10 68.6 120 35.8
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.2e-09 67.8 87 42.5
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 6.7e-08 62.0 41 68.3


User provided reference genes

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