Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 3.4e-121 439.5 217 100.0
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 3.8e-88 329.7 217 72.4
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 2.7e-86 323.6 217 71.0
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 2.1e-83 313.9 216 70.4
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.7e-72 277.7 207 65.2
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 8.5e-72 275.4 219 63.0
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 1.9e-71 274.2 225 60.9
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 4.2e-71 273.1 186 72.6
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 5.5e-71 272.7 202 65.3
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 4.3e-68 263.1 215 60.9
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 2.2e-67 260.8 183 70.5
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 2.4e-66 257.3 217 59.4
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 4.5e-65 253.1 217 60.8
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 1.0e-64 251.9 213 56.8
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 2.2e-64 250.8 220 60.0
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 2.9e-64 250.4 213 59.6
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 8.5e-64 248.8 218 59.6
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 1.6e-62 244.6 222 56.8
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 6.1e-62 242.7 218 60.1
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 6.7e-61 239.2 210 52.4
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.0e-60 237.7 219 55.3
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 7.4e-60 235.7 165 64.2
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 2.2e-59 234.2 231 54.5
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.8e-58 231.1 211 53.1
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 2.4e-58 230.7 202 52.5
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 9.1e-58 228.8 205 52.2
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 1.2e-57 228.4 205 52.2
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 3.5e-57 226.9 219 51.6
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 3.5e-57 226.9 180 60.6
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 4.5e-57 226.5 217 54.4
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 5.9e-57 226.1 192 58.9
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 1.0e-56 225.3 216 53.7
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 1.7e-56 224.6 217 54.4
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 1.7e-56 224.6 220 50.5
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 2.2e-56 224.2 165 61.8
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 5.0e-56 223.0 149 65.8
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 8.5e-56 222.2 220 54.1
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 1.2e-54 218.4 218 52.3
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 2.1e-54 217.6 222 52.3
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 2.7e-54 217.2 205 50.2
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 4.7e-54 216.5 176 54.0
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 4.7e-54 216.5 205 49.8
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 1.8e-53 214.5 181 56.9
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 2.3e-53 214.2 205 49.3
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 4.0e-53 213.4 217 51.2
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 6.7e-53 212.6 166 55.4
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 2.0e-52 211.1 166 54.2
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 2.6e-52 210.7 188 54.3
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 4.4e-52 209.9 201 49.3
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 2.8e-51 207.2 215 50.7
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 4.8e-51 206.5 219 47.5
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 4.8e-51 206.5 214 50.0
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 1.1e-50 205.3 217 48.8
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 1.1e-50 205.3 191 54.5
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 1.4e-50 204.9 170 57.1
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 2.4e-50 204.1 180 52.8
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 3.1e-50 203.8 164 55.5
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 5.3e-50 203.0 161 54.0
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 1.2e-49 201.8 221 46.6
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 1.1e-47 195.3 164 53.0
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 7.2e-47 192.6 218 46.3
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 1.6e-46 191.4 176 55.7
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 1.0e-45 188.7 206 46.1
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 3.0e-45 187.2 178 50.0
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 1.2e-44 185.3 219 44.3
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 1.5e-44 184.9 215 44.2
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 1.5e-44 184.9 215 44.7
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 3.4e-44 183.7 199 47.7
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 3.4e-44 183.7 203 46.3
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 5.7e-44 183.0 215 44.7
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 2.2e-43 181.0 155 49.7
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 2.2e-43 181.0 155 49.7
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 6.3e-43 179.5 182 48.4
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 6.3e-43 179.5 169 50.3
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 8.3e-43 179.1 213 44.1
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 1.1e-42 178.7 213 43.7
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 1.4e-42 178.3 213 44.6
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 2.0e-41 174.5 213 43.7
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 7.7e-41 172.6 219 43.4
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 1.0e-40 172.2 213 44.6
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 2.2e-40 171.0 214 42.5
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 2.9e-40 170.6 215 41.9
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 2.9e-40 170.6 180 46.1
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 2.9e-40 170.6 215 41.9
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 2.9e-40 170.6 193 45.1
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 3.8e-40 170.2 190 45.3
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 1.9e-39 167.9 212 42.9
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 2.1e-38 164.5 212 41.5
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 2.1e-38 164.5 140 50.0
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 2.7e-38 164.1 190 43.7
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 1.3e-35 155.2 191 42.4
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 1.2e-33 148.7 105 63.8
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 5.9e-33 146.4 115 57.4
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.9e-32 144.1 107 62.6
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 5.0e-32 143.3 105 61.0
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 2.8e-30 137.5 95 61.1
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 3.7e-27 127.1 193 35.8
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.8e-26 124.8 198 36.4
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 1.3e-24 118.6 87 60.9
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 2.5e-23 114.4 105 51.4
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 3.3e-23 114.0 105 49.5
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 8.9e-13 79.3 217 28.6
SEGI_09666 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 3.7e-11 73.9 137 29.9
ATR0068G034 Amborella trichopoda HOM05D007402 ORTHO05D003673 2.1e-09 68.2 193 29.0
SEGI_29222 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 7.8e-09 66.2 146 28.8
HanXRQChr13g0419931 Helianthus annuus HOM05D007402 ORTHO05D003673 1.7e-08 65.1 156 28.2
CDE04G3188 Ceratophyllum demersum HOM05D006895 ORTHO05D008605 3.9e-08 63.9 149 29.5
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 6.6e-08 63.2 43 72.1
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 6.6e-08 63.2 43 72.1
Atru.chr6.1455 Acer truncatum HOM05D007486 ORTHO05D003673 8.6e-08 62.8 138 29.0
ClCG03G002330 Citrullus lanatus HOM05D007402 ORTHO05D003673 8.6e-08 62.8 155 29.7
MD11G1131200 Malus domestica HOM05D007402 ORTHO05D003673 8.6e-08 62.8 156 30.8
Ciclev10028524m.g Citrus clementina HOM05D007402 ORTHO05D003673 1.1e-07 62.4 138 29.0
MBI06_g43058_MAGBIO Magnolia biondii HOM05D007402 ORTHO05D003673 1.1e-07 62.4 169 28.4
Manes.13G051900 Manihot esculenta HOM05D007486 ORTHO05D003673 1.1e-07 62.4 198 25.8
THA.LOC104804636 Tarenaya hassleriana HOM05D007486 ORTHO05D003673 1.9e-07 61.6 138 28.3
CANSAT01G2277 Cannabis sativa HOM05D007486 ORTHO05D003673 2.5e-07 61.2 175 28.0
Lsat_1_v5_gn_2_97841 Lactuca sativa HOM05D007402 ORTHO05D003673 2.5e-07 61.2 143 28.7
Lju470C2G3 Lonicera japonica HOM05D007402 ORTHO05D003673 2.5e-07 61.2 138 31.2
Aqoxy4G03220 Aquilegia oxysepala HOM05D007402 ORTHO05D003673 3.3e-07 60.8 120 31.7
Aqoxy7G03388 Aquilegia oxysepala HOM05D007486 ORTHO05D003673 3.3e-07 60.8 170 24.7
MBI06_g23075_MAGBIO Magnolia biondii HOM05D007402 ORTHO05D003673 3.3e-07 60.8 169 27.8
MELO3C005032.2 Cucumis melo HOM05D007402 ORTHO05D003673 4.3e-07 60.5 186 27.4
MD12G1138900 Malus domestica HOM05D006895 ORTHO05D008605 4.3e-07 60.5 152 29.6
CsaV3_3G030190 Cucumis sativus L. HOM05D007486 ORTHO05D003673 7.3e-07 59.7 165 26.1
Eucgr.I02218 Eucalyptus grandis HOM05D006556 ORTHO05D008146 7.3e-07 59.7 106 33.0
Lalb_Chr03g0027151 Lupinus albus HOM05D007402 ORTHO05D003673 7.3e-07 59.7 167 27.5
Nn7g37996 Nelumbo nucifera HOM05D007402 ORTHO05D003673 9.5e-07 59.3 129 35.7
Nitab4.5_0000131g0200 Nicotiana tabacum HOM05D007402 ORTHO05D003673 9.5e-07 59.3 169 26.0
Actinidia24081 Actinidia chinensis HOM05D007402 ORTHO05D003673 1.2e-06 58.9 138 28.3
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.2e-06 58.9 43 67.4
RcHm_v2.0_Chr5g0060431 Rosa chinensis HOM05D007402 ORTHO05D003673 1.2e-06 58.9 188 28.2
ATR0665G439 Amborella trichopoda HOM05D007486 ORTHO05D003673 1.6e-06 58.5 174 25.3
Cfa011358 Carpinus fangiana HOM05D007402 ORTHO05D003673 1.6e-06 58.5 203 27.1
DCAR_009247 Daucus carota HOM05D006895 ORTHO05D008605 2.1e-06 58.2 136 29.4
DCAR_008418 Daucus carota HOM05D007486 ORTHO05D003673 2.8e-06 57.8 186 25.3
CANSAT01G2464 Cannabis sativa HOM05D007486 ORTHO05D003673 3.6e-06 57.4 191 26.2
CDE02G0959 Ceratophyllum demersum HOM05D007402 ORTHO05D003673 3.6e-06 57.4 138 30.4
MD03G1104000 Malus domestica HOM05D007402 ORTHO05D003673 3.6e-06 57.4 191 28.8
Prupe.6G250800 Prunus persica HOM05D006895 ORTHO05D008605 3.6e-06 57.4 138 29.0
Sed0010667 Sechium edule HOM05D007402 ORTHO05D003673 3.6e-06 57.4 155 28.4
Manes.11G141800 Manihot esculenta HOM05D007402 ORTHO05D003673 4.7e-06 57.0 110 30.0
QL01p037328 Quercus lobata HOM05D007402 ORTHO05D003673 4.7e-06 57.0 154 27.9
Ciclev10031787m.g Citrus clementina HOM05D007486 ORTHO05D003673 6.2e-06 56.6 196 26.5
Dinv03604 Davidia involucrata HOM05D007402 ORTHO05D003673 6.2e-06 56.6 133 30.8
FvH4_3g33090 Fragaria vesca HOM05D007402 ORTHO05D003673 6.2e-06 56.6 183 29.0
Nn4g25527 Nelumbo nucifera HOM05D007409 ORTHO05D009264 6.2e-06 56.6 126 27.8
Potri.002G248100 Populus trichocarpa HOM05D007486 ORTHO05D003673 6.2e-06 56.6 196 27.0
CiPaw.14G078200 Carya illinoinensis HOM05D007402 ORTHO05D003673 8.1e-06 56.2 186 26.9
Haze_23904 Corylus avellana HOM05D007402 ORTHO05D003673 8.1e-06 56.2 186 29.0
CsaV3_1G013010 Cucumis sativus L. HOM05D007402 ORTHO05D003673 8.1e-06 56.2 186 26.9
Lj2P1035T18 Lonicera japonica HOM05D007402 ORTHO05D003673 8.1e-06 56.2 151 29.1
Peaxi162Scf00454g00034 Petunia axillaris HOM05D007402 ORTHO05D003673 8.1e-06 56.2 169 24.3
PGR004G2397 Punica granatum HOM05D007402 ORTHO05D003673 8.1e-06 56.2 145 29.7


User provided reference genes

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