Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 5.1e-84 314.3 151 100.0
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 1.5e-80 302.8 151 95.4
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 7.6e-80 300.4 151 94.7
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 2.9e-79 298.5 150 93.3
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 1.2e-77 293.1 151 91.4
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 1.2e-77 293.1 151 91.4
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 1.6e-77 292.7 151 90.7
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 2.1e-77 292.4 150 90.7
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 2.1e-77 292.4 151 90.7
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 2.1e-77 292.4 151 92.7
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 4.6e-77 291.2 151 91.4
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 4.6e-77 291.2 151 92.1
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 6.0e-77 290.8 151 91.4
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 6.0e-77 290.8 151 91.4
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 7.8e-77 290.4 151 90.7
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 1.3e-76 289.7 151 91.4
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 1.3e-76 289.7 151 91.4
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 1.7e-76 289.3 151 90.7
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 2.3e-76 288.9 151 90.7
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 2.3e-76 288.9 151 90.7
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 2.3e-76 288.9 151 90.7
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 2.3e-76 288.9 151 90.7
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 2.3e-76 288.9 151 90.1
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 2.3e-76 288.9 151 90.7
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 3.0e-76 288.5 151 89.4
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 3.0e-76 288.5 151 88.7
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 3.9e-76 288.1 151 91.4
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 3.9e-76 288.1 151 90.1
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 6.6e-76 287.3 151 89.4
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 6.6e-76 287.3 151 90.7
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 6.6e-76 287.3 151 90.1
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 6.6e-76 287.3 151 88.7
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 6.6e-76 287.3 151 88.7
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 8.6e-76 287.0 151 90.1
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 1.1e-75 286.6 151 91.4
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 1.5e-75 286.2 151 90.1
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 1.9e-75 285.8 150 90.0
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 1.9e-75 285.8 150 90.0
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 3.3e-75 285.0 151 90.1
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 4.3e-75 284.6 151 88.1
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 4.3e-75 284.6 151 88.7
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 4.3e-75 284.6 151 90.7
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 5.6e-75 284.3 151 88.7
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 7.3e-75 283.9 151 88.7
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 7.3e-75 283.9 151 88.7
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 7.3e-75 283.9 151 88.1
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 9.6e-75 283.5 151 88.1
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 9.6e-75 283.5 151 88.7
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 1.2e-74 283.1 151 88.7
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 1.6e-74 282.7 166 83.1
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 1.6e-74 282.7 151 89.4
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 1.6e-74 282.7 151 88.1
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 2.1e-74 282.3 151 88.1
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 2.1e-74 282.3 151 88.1
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 2.8e-74 282.0 151 88.7
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.8e-74 282.0 191 75.4
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 2.8e-74 282.0 151 89.4
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 6.2e-74 280.8 151 87.4
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 6.2e-74 280.8 151 88.1
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 8.1e-74 280.4 151 87.4
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.1e-73 280.0 151 88.1
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 1.4e-73 279.6 157 86.0
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 1.4e-73 279.6 150 86.7
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 1.8e-73 279.3 151 86.1
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 5.2e-73 277.7 150 86.7
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 5.2e-73 277.7 151 88.7
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 5.2e-73 277.7 151 88.7
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 6.9e-73 277.3 150 86.0
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 6.9e-73 277.3 151 85.4
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 6.9e-73 277.3 151 86.8
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 8.9e-73 276.9 151 86.1
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 1.2e-72 276.6 150 86.0
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 1.2e-72 276.6 151 86.8
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 2.0e-72 275.8 151 86.1
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 3.4e-72 275.0 150 85.3
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 4.4e-72 274.6 150 85.3
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 5.8e-72 274.2 151 85.4
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 7.6e-72 273.9 151 85.4
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 9.9e-72 273.5 150 84.7
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 9.9e-72 273.5 149 85.2
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 1.3e-71 273.1 150 84.7
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 1.3e-71 273.1 150 84.7
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.7e-71 272.7 151 84.8
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 2.2e-71 272.3 150 84.0
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 2.2e-71 272.3 150 84.0
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 2.2e-71 272.3 150 84.0
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 2.2e-71 272.3 146 87.0
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 2.9e-71 271.9 151 85.4
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 5.1e-68 261.2 205 65.9
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 1.9e-67 259.2 150 83.3
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 2.5e-67 258.8 156 82.7
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 7.3e-67 257.3 137 89.8
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 2.1e-66 255.8 137 89.1
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 3.6e-66 255.0 161 77.6
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 8.1e-66 253.8 151 79.5
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 3.1e-65 251.9 145 85.5
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 6.9e-65 250.8 133 87.2
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.2e-64 250.0 151 79.5
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 4.9e-63 244.6 151 78.8
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 2.7e-61 238.8 134 82.1
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 3.0e-60 235.3 137 80.3
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 3.9e-60 235.0 126 87.3
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.5e-59 233.0 151 73.5
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 6.4e-55 217.6 151 72.2
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 3.9e-44 181.8 137 69.3
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 6.3e-42 174.5 170 56.5
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.1e-38 163.7 93 80.6
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 6.7e-36 154.5 106 73.6
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 2.8e-34 149.1 151 54.3
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 1.4e-25 120.2 125 51.2
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 1.4e-25 120.2 60 86.7
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 6.5e-23 111.3 148 41.2
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 4.5e-16 88.6 125 41.6
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 7.7e-16 87.8 58 67.2
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 2.5e-14 82.8 118 41.5
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 7.2e-14 81.3 51 76.5
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 1.7e-07 60.1 35 74.3
A05p26530 Brassica napus HOM05D005283 ORTHO05D021637 2.9e-07 59.3 93 38.7


User provided reference genes

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