Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1121 Trochodendron aralioides HOM05D003636 ORTHO05D026550 2.6e-53 211.8 112 100.0
TAR362G1191 Trochodendron aralioides HOM05D003636 ORTHO05D005160 3.3e-32 141.7 102 73.5
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 1.2e-21 106.7 102 60.8
GSVIVG01018130001 Vitis vinifera HOM05D003636 ORTHO05D005160 1.5e-19 99.8 102 60.8
Sabra16G0282600 Salix brachista HOM05D003636 ORTHO05D005160 1.9e-19 99.4 102 60.8
Potri.001G415900 Populus trichocarpa HOM05D003636 ORTHO05D005160 7.2e-19 97.4 102 58.8
MBI11_g20311_MAGBIO Magnolia biondii HOM05D003636 ORTHO05D005160 3.0e-17 92.0 116 51.7
ATR0665G579 Amborella trichopoda HOM05D003636 ORTHO05D005160 6.7e-17 90.9 114 50.9
Hma1.2p1_1276F.1_g272050 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 6.7e-17 90.9 103 52.4
Dinv00242 Davidia involucrata HOM05D003636 ORTHO05D005160 1.2e-16 90.1 103 53.4
Dinv02719 Davidia involucrata HOM05D003636 ORTHO05D005160 1.2e-16 90.1 103 53.4
Hma1.2p1_1798F.1_g302870 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 2.0e-16 89.4 103 51.5
Nn1g02632 Nelumbo nucifera HOM05D003636 ORTHO05D005160 9.7e-16 87.0 102 53.9
Oeu002605.1 Olea europaea HOM05D003636 ORTHO05D005160 1.7e-15 86.3 102 52.9
vmacro15411 Vaccinium macrocarpon HOM05D003636 ORTHO05D005160 1.1e-14 83.6 102 51.0
ATR0753G084 Amborella trichopoda HOM05D003636 ORTHO05D026550 1.4e-14 83.2 102 50.0
Actinidia19047 Actinidia chinensis HOM05D003636 ORTHO05D005160 2.4e-14 82.4 99 52.5
Actinidia05462 Actinidia chinensis HOM05D003636 ORTHO05D005160 7.0e-14 80.9 99 50.5
CSS0043760 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 2.0e-13 79.3 98 49.0
Gohir.A06G066800 Gossypium hirsutum HOM05D003636 ORTHO05D005160 2.0e-13 79.3 91 52.7
Lalb_Chr21g0308481 Lupinus albus HOM05D003636 ORTHO05D005160 2.0e-13 79.3 97 49.5
Manes.02G210300 Manihot esculenta HOM05D003636 ORTHO05D005160 2.7e-13 79.0 102 48.0
Atru.chr4.2209 Acer truncatum HOM05D003636 ORTHO05D005160 4.5e-13 78.2 102 49.0
Ca_11090_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 4.5e-13 78.2 99 48.5
Gorai.010G076500 Gossypium raimondii HOM05D003636 ORTHO05D005160 4.5e-13 78.2 91 51.6
CSS0023771 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 7.7e-13 77.4 102 46.1
CSS0034908 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 7.7e-13 77.4 98 48.0
Phvul.007G037800 Phaseolus vulgaris HOM05D003636 ORTHO05D005160 7.7e-13 77.4 112 46.4
MSTRG.4105 Avicennia marina HOM05D003636 ORTHO05D005160 1.7e-12 76.3 101 52.5
Lj2A972G23 Lonicera japonica HOM05D003636 ORTHO05D005160 1.7e-12 76.3 102 48.0
PSO170G0718 Papaver somniferum HOM05D003636 ORTHO05D005160 1.7e-12 76.3 102 51.0
TWI73G0437 Tripterygium wilfordii HOM05D003636 ORTHO05D005160 2.2e-12 75.9 100 48.0
QL02p053474 Quercus lobata HOM05D003636 ORTHO05D005160 2.9e-12 75.5 101 49.5
THA.LOC104801942 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 2.9e-12 75.5 101 50.5
Lj2g0003499 Lotus japonicus HOM05D003636 ORTHO05D005160 3.8e-12 75.1 96 47.9
arahy.Tifrunner.gnm1.ann1.7RJ7GD Arachis hypogaea HOM05D003636 ORTHO05D005160 5.0e-12 74.7 98 51.0
CiPaw.02G115900 Carya illinoinensis HOM05D003636 ORTHO05D005160 5.0e-12 74.7 102 48.0
Ciclev10004361m.g Citrus clementina HOM05D003636 ORTHO05D005160 6.5e-12 74.3 102 50.0
PSO017G1763 Papaver somniferum HOM05D003636 ORTHO05D005160 6.5e-12 74.3 102 49.0
Aqoxy2G03579 Aquilegia oxysepala HOM05D003636 ORTHO05D005160 8.5e-12 73.9 102 54.9
ClCG09G021970 Citrullus lanatus HOM05D003636 ORTHO05D005160 8.5e-12 73.9 99 46.5
Gohir.D06G065300 Gossypium hirsutum HOM05D003636 ORTHO05D005160 8.5e-12 73.9 91 50.5
Rhsim07G0057600 Rhododendron simsii HOM05D003636 ORTHO05D005160 1.1e-11 73.6 102 47.1
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 1.5e-11 73.2 99 45.5
VMungo0720G2747 Vigna mungo HOM05D003636 ORTHO05D005160 1.5e-11 73.2 99 47.5
arahy.Tifrunner.gnm1.ann1.T9EQBK Arachis hypogaea HOM05D003636 ORTHO05D005160 1.9e-11 72.8 98 50.0
Migut.G00443 Erythranthe guttata HOM05D003636 ORTHO05D005160 1.9e-11 72.8 99 45.5
Lj5g0001808 Lotus japonicus HOM05D003636 ORTHO05D005160 1.9e-11 72.8 96 46.9
COL.COLO4_15803 Corchorus olitorius HOM05D003636 ORTHO05D005160 2.5e-11 72.4 97 49.5
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 3.2e-11 72.0 99 45.5
Manes.02G214300 Manihot esculenta HOM05D003636 ORTHO05D005160 4.2e-11 71.6 102 44.1
Thecc.04G247000 Theobroma cacao HOM05D003636 ORTHO05D005160 4.2e-11 71.6 97 49.5
EL10Ac2g04633 Beta vulgaris HOM05D003636 ORTHO05D005160 7.2e-11 70.9 102 47.1
Haze_11311 Corylus avellana HOM05D003636 ORTHO05D005160 7.2e-11 70.9 101 47.5
Haze_11308 Corylus avellana HOM05D003636 ORTHO05D005160 9.4e-11 70.5 101 50.5
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 1.2e-10 70.1 102 48.0
Hma1.2p1_2670F.1_g326620 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 1.2e-10 70.1 109 42.2
TPR.G13854 Trifolium pratense HOM05D003636 ORTHO05D005160 1.2e-10 70.1 100 42.0
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 1.6e-10 69.7 102 46.1
AUR62014577 Chenopodium quinoa HOM05D003636 ORTHO05D005160 3.6e-10 68.6 104 46.2
AUR62039385 Chenopodium quinoa HOM05D003636 ORTHO05D005160 4.7e-10 68.2 104 46.2
Cc03_g04930 Coffea canephora HOM05D003636 ORTHO05D005160 4.7e-10 68.2 101 47.5
Sc13g0005100 Simmondsia chinensis HOM05D003636 ORTHO05D005160 4.7e-10 68.2 102 46.1
SalBow2G0018 Salvia bowleyana HOM05D003636 ORTHO05D005160 8.0e-10 67.4 104 47.1
Hund05016 Selenicereus undatus HOM05D003636 ORTHO05D005160 8.0e-10 67.4 104 46.2
AL1G65900 Arabidopsis lyrata HOM05D003636 ORTHO05D005160 1.0e-09 67.0 98 42.9
ATR0691G029 Amborella trichopoda HOM05D003636 ORTHO05D026550 1.8e-09 66.2 98 45.9
AT1G56290 Arabidopsis thaliana HOM05D003636 ORTHO05D005160 1.8e-09 66.2 98 40.8
Prupe.1G031700 Prunus persica HOM05D003636 ORTHO05D005160 4.0e-09 65.1 99 43.4
Rhsim02G0033400 Rhododendron simsii HOM05D003636 ORTHO05D005160 4.0e-09 65.1 102 46.1
SGA_v2.0_scaffold101G29798 Striga asiatica HOM05D003636 ORTHO05D005160 4.0e-09 65.1 102 42.2
Thhalv10023321m.g Eutrema salsugineum HOM05D003636 ORTHO05D005160 5.2e-09 64.7 98 41.8
Sed0019602 Sechium edule HOM05D003636 ORTHO05D005160 5.2e-09 64.7 98 42.9
Eucgr.G02714 Eucalyptus grandis HOM05D003636 ORTHO05D005160 6.8e-09 64.3 97 45.4
Nitab4.5_0000525g0280 Nicotiana tabacum HOM05D003636 ORTHO05D005160 6.8e-09 64.3 101 45.5
Ah.10g037290 Amaranthus hybridus HOM05D003636 ORTHO05D005160 8.8e-09 63.9 103 43.7
Zm00001eb056720 Zea mays HOM05D003636 ORTHO05D005160 8.8e-09 63.9 113 43.4
CsaV3_5G014730 Cucumis sativus L. HOM05D003636 ORTHO05D005160 1.2e-08 63.5 99 42.4
RcHm_v2.0_Chr4g0390791 Rosa chinensis HOM05D003636 ORTHO05D005160 1.2e-08 63.5 100 46.0
Solyc09g083420.3 Solanum lycopersicum HOM05D003636 ORTHO05D005160 1.2e-08 63.5 102 47.1
Sopen09g032360 Solanum pennellii HOM05D003636 ORTHO05D005160 1.2e-08 63.5 102 47.1
CAN.G1007.10 Capsicum annuum HOM05D003636 ORTHO05D005160 1.5e-08 63.2 101 45.5
Os03g0740700 Oryza sativa ssp. japonica HOM05D003636 ORTHO05D005160 1.5e-08 63.2 111 44.1
CARHR289840 Cardamine hirsuta HOM05D003636 ORTHO05D005160 2.0e-08 62.8 99 43.4
MELO3C015028.2 Cucumis melo HOM05D003636 ORTHO05D005160 2.0e-08 62.8 99 41.4
PGSC0003DMG400015117 Solanum tuberosum HOM05D003636 ORTHO05D005160 2.6e-08 62.4 101 45.5
Ah.09g223830 Amaranthus hybridus HOM05D003636 ORTHO05D005160 3.4e-08 62.0 103 43.7
CSS0010332 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 3.4e-08 62.0 98 43.9
CSS0030608 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 3.4e-08 62.0 98 43.9
HanXRQChr09g0258341 Helianthus annuus HOM05D003636 ORTHO05D005160 3.4e-08 62.0 106 39.6
Lsat_1_v5_gn_5_72980 Lactuca sativa HOM05D003636 ORTHO05D005160 3.4e-08 62.0 99 42.4
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 4.4e-08 61.6 97 42.3
PGR142G0130 Punica granatum HOM05D003636 ORTHO05D005160 4.4e-08 61.6 103 43.7
Aa31LG2G11570 Aethionema arabicum HOM05D003636 ORTHO05D005160 5.7e-08 61.2 97 41.2
ATR0681G056 Amborella trichopoda HOM05D003636 ORTHO05D026550 7.5e-08 60.8 84 47.6
CDE06G0563 Ceratophyllum demersum HOM05D003636 ORTHO05D005160 7.5e-08 60.8 104 43.3
DCAR_024229 Daucus carota HOM05D003636 ORTHO05D005160 7.5e-08 60.8 99 40.4
HanXRQChr06g0181471 Helianthus annuus HOM05D003636 ORTHO05D005160 7.5e-08 60.8 99 40.4
Cc01_g03130 Coffea canephora HOM05D003636 ORTHO05D005160 9.8e-08 60.5 100 48.0
RcHm_v2.0_Chr5g0000461 Rosa chinensis HOM05D003636 ORTHO05D005160 1.3e-07 60.1 100 44.0
Carub.0002s0788 Capsella rubella HOM05D003636 ORTHO05D005160 1.7e-07 59.7 97 38.1
Dinv44638 Davidia involucrata HOM05D003636 ORTHO05D005160 2.2e-07 59.3 74 52.7
Nitab4.5_0001418g0070 Nicotiana tabacum HOM05D003636 ORTHO05D005160 2.8e-07 58.9 102 43.1
Thecc.05G005400 Theobroma cacao HOM05D003636 ORTHO05D005160 4.8e-07 58.2 96 44.8
BcaB07g31117 Brassica carinata HOM05D003636 ORTHO05D005160 6.3e-07 57.8 98 41.8
Haze_21469 Corylus avellana HOM05D003636 ORTHO05D005160 6.3e-07 57.8 96 40.6
MD16G1209600 Malus domestica HOM05D003636 ORTHO05D005160 6.3e-07 57.8 99 39.4
Peaxi162Scf00813g00221 Petunia axillaris HOM05D003636 ORTHO05D005160 6.3e-07 57.8 98 45.9
Psat2g188360 Pisum sativum HOM05D003636 ORTHO05D005160 1.8e-06 56.2 97 42.3
unitig_736.g22446 Utricularia gibba HOM05D003636 ORTHO05D005160 3.1e-06 55.5 101 40.6
FAN17G1850 Fragaria x ananassa HOM05D003636 ORTHO05D005160 7.0e-06 54.3 100 43.0
A09p19180 Brassica napus HOM05D003636 ORTHO05D005160 9.1e-06 53.9 97 41.2
FvH4_4g02820 Fragaria vesca HOM05D003636 ORTHO05D005160 9.1e-06 53.9 99 40.4


User provided reference genes

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