Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 0.0e+00 1355.5 674 100.0
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 1.2e-254 883.2 683 67.8
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 1.8e-237 826.2 687 64.6
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 1.0e-232 810.4 675 64.7
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 2.7e-230 802.4 685 64.2
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 1.4e-226 790.0 675 61.9
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 4.1e-226 788.5 684 63.0
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 7.0e-226 787.7 682 63.0
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 7.7e-225 784.3 692 61.1
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 4.7e-222 775.0 672 61.5
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 5.7e-220 768.1 683 62.2
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 1.4e-218 763.5 681 60.6
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 3.8e-216 755.4 685 60.4
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 1.1e-215 753.8 681 61.2
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 3.2e-215 752.3 689 60.2
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 4.4e-212 741.9 635 63.1
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 3.7e-211 738.8 683 59.3
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 7.0e-210 734.6 696 59.9
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 1.3e-208 730.3 692 59.4
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 4.2e-207 725.3 692 59.5
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 1.2e-206 723.8 840 51.1
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 2.1e-206 723.0 648 60.8
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 6.8e-205 718.0 680 58.5
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 1.7e-203 713.4 687 58.4
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 1.8e-202 709.9 692 59.1
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.6e-201 706.8 687 58.2
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.7e-200 703.4 687 57.9
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 5.0e-200 701.8 683 58.1
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 1.9e-199 699.9 692 58.5
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 2.8e-198 696.0 690 57.1
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 4.7e-198 695.3 681 57.9
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 4.7e-198 695.3 679 58.6
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 1.0e-197 694.1 723 56.0
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 1.9e-194 683.3 688 55.8
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 2.0e-193 679.9 735 54.7
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 2.3e-192 676.4 678 54.9
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 3.0e-192 676.0 678 56.3
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 1.1e-191 674.1 678 55.0
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 2.5e-191 672.9 681 55.9
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 8.0e-190 667.9 680 54.6
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 8.0e-190 667.9 725 54.5
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 1.1e-189 667.5 679 56.3
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 2.3e-189 666.4 691 55.4
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 3.4e-188 662.5 734 54.6
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 7.0e-186 654.8 692 55.3
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 9.2e-186 654.4 663 54.8
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 1.2e-185 654.1 666 54.2
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 2.7e-185 652.9 676 55.5
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 3.5e-185 652.5 675 55.6
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 7.8e-185 651.4 695 54.1
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 3.0e-184 649.4 687 54.9
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 1.1e-183 647.5 688 54.5
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 9.5e-183 644.4 686 53.5
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 2.8e-182 642.9 667 55.3
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 3.6e-182 642.5 681 54.2
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 1.4e-181 640.6 582 61.7
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 1.4e-181 640.6 682 54.3
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 1.8e-181 640.2 685 54.2
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 4.0e-181 639.0 663 54.4
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 4.0e-181 639.0 673 55.7
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 1.5e-180 637.1 681 54.9
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 3.4e-180 636.0 709 53.9
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 4.4e-180 635.6 705 54.3
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.2e-179 633.3 506 67.2
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 4.9e-179 632.1 698 53.9
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 2.7e-177 626.3 690 54.3
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 6.6e-176 621.7 684 55.1
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 6.6e-176 621.7 669 52.9
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 8.6e-176 621.3 686 53.5
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 1.5e-175 620.5 690 53.8
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 1.6e-174 617.1 594 59.3
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 2.1e-174 616.7 620 55.6
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 2.1e-174 616.7 716 52.0
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 3.6e-174 615.9 669 53.1
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 6.8e-173 611.7 692 53.6
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 2.0e-172 610.1 651 54.1
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 4.4e-172 609.0 694 53.0
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 2.9e-171 606.3 698 53.0
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 8.4e-171 604.7 626 54.6
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 5.4e-170 602.1 670 53.3
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 7.1e-170 601.7 684 52.6
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 1.6e-169 600.5 686 51.7
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 7.8e-169 598.2 676 51.9
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 5.6e-167 592.0 685 50.5
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 7.3e-167 591.7 681 50.2
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 3.1e-165 586.3 610 53.8
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 4.0e-165 585.9 726 50.1
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 3.4e-164 582.8 670 51.5
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 7.6e-164 581.6 590 54.9
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 9.9e-164 581.3 669 51.0
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 6.4e-163 578.6 671 51.6
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 9.3e-162 574.7 673 51.0
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 2.1e-161 573.5 671 49.3
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.7e-161 573.2 684 51.0
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 3.5e-161 572.8 670 50.4
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 3.5e-161 572.8 672 51.0
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 5.1e-160 568.9 672 50.7
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.1e-159 567.8 709 49.4
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 2.5e-159 566.6 673 51.7
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 1.4e-157 560.8 670 49.1
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 2.4e-157 560.1 677 49.5
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 7.1e-154 548.5 659 51.3
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 4.6e-153 545.8 659 51.1
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 2.5e-151 540.0 668 50.0
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 1.4e-149 534.3 675 48.6
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 4.0e-149 532.7 659 50.2
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 4.0e-149 532.7 591 51.6
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 2.5e-146 523.5 656 50.0
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 2.1e-145 520.4 679 48.9
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 2.8e-142 510.0 612 49.3
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 2.6e-140 503.4 666 47.3
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 7.1e-138 495.4 640 45.9
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 7.1e-138 495.4 630 48.9
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 3.0e-136 490.0 677 45.1
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 5.0e-131 472.6 661 46.1
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 1.7e-126 457.6 628 45.4
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 1.3e-123 448.0 758 42.1
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 3.7e-110 403.3 687 39.6
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 4.0e-104 383.3 438 51.6
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 1.6e-97 361.3 583 41.3
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 5.2e-96 356.3 322 59.9
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 4.7e-89 333.2 674 37.5
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 7.3e-82 309.3 659 36.4
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 1.9e-77 294.7 674 35.2
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 4.7e-73 280.0 651 33.5
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 3.0e-67 260.8 181 76.2
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 2.8e-57 227.6 186 67.7
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 3.1e-48 197.6 230 47.8
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 6.4e-46 189.9 480 33.8
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 9.3e-45 186.0 216 50.0
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 9.9e-39 166.0 770 26.6
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 2.9e-38 164.5 97 84.5
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 1.2e-31 142.5 121 62.8
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 1.0e-27 129.4 645 25.7
TAR362G0435 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.3e-27 128.3 104 66.3
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 1.9e-26 125.2 140 54.3
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 7.4e-26 123.2 105 59.0
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 3.2e-13 81.3 87 55.2
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 3.2e-13 81.3 211 30.8
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 1.7e-09 68.9 59 55.9
Zm00001eb009560 Zea mays HOM05D005204 ORTHO05D006037 4.8e-09 67.4 113 39.8
Zm00001eb046380 Zea mays HOM05D005204 ORTHO05D006037 4.8e-09 67.4 113 39.8
Zm00001eb219840 Zea mays HOM05D005204 ORTHO05D006037 4.8e-09 67.4 113 39.8
Zm00001eb139230 Zea mays HOM05D005204 ORTHO05D006037 7.7e-07 60.1 110 40.0
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 1.0e-06 59.7 64 45.3


User provided reference genes

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