Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 3.2e-107 391.7 195 100.0
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 5.7e-80 301.2 190 80.0
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 7.5e-80 300.8 196 79.6
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 2.8e-79 298.9 199 73.9
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 2.8e-79 298.9 199 73.9
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 6.3e-79 297.7 193 76.7
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 9.1e-78 293.9 193 75.6
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 1.6e-77 293.1 192 75.5
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 2.7e-77 292.4 198 73.7
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 4.5e-77 291.6 192 75.0
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 7.7e-77 290.8 195 73.8
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 7.7e-77 290.8 196 74.5
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 8.6e-76 287.3 192 74.0
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 1.5e-75 286.6 192 73.4
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 4.2e-75 285.0 194 74.2
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 7.2e-75 284.3 194 74.7
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 1.6e-74 283.1 197 73.1
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 2.8e-74 282.3 195 73.3
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 3.6e-74 282.0 193 72.5
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 3.6e-74 282.0 194 74.7
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 8.0e-74 280.8 195 71.8
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 1.0e-73 280.4 198 68.2
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 1.0e-73 280.4 195 72.8
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 1.0e-73 280.4 197 74.1
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 1.0e-73 280.4 192 71.9
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 1.8e-73 279.6 195 72.8
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 1.8e-73 279.6 193 73.6
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 3.0e-73 278.9 184 76.1
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 4.0e-73 278.5 193 70.5
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 8.8e-73 277.3 192 71.4
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 8.8e-73 277.3 192 72.4
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 2.6e-72 275.8 192 72.4
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 4.4e-72 275.0 195 71.8
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 5.7e-72 274.6 193 71.5
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 5.7e-72 274.6 190 73.2
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 7.5e-72 274.2 195 71.8
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 9.8e-72 273.9 192 69.3
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 1.3e-71 273.5 195 73.3
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 1.7e-71 273.1 195 71.3
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 1.7e-71 273.1 195 71.3
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 4.9e-71 271.6 193 70.5
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 6.3e-71 271.2 193 69.4
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 8.3e-71 270.8 192 69.3
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 8.3e-71 270.8 198 68.7
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 1.8e-70 269.6 191 71.2
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 3.1e-70 268.9 192 66.7
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 3.1e-70 268.9 196 68.4
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 1.6e-69 266.5 192 65.6
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 1.6e-69 266.5 192 65.6
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 2.0e-69 266.2 192 69.8
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 2.0e-69 266.2 197 69.0
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 2.0e-69 266.2 193 69.4
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 2.7e-69 265.8 196 68.4
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 2.7e-69 265.8 196 68.4
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 3.5e-69 265.4 192 65.1
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 3.5e-69 265.4 228 62.7
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 4.5e-69 265.0 192 65.1
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 5.9e-69 264.6 192 65.1
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 5.9e-69 264.6 192 70.8
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 5.9e-69 264.6 195 68.2
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 5.9e-69 264.6 196 68.4
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 7.8e-69 264.2 193 64.8
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 1.7e-68 263.1 230 59.6
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 1.1e-67 260.4 192 64.6
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 1.5e-67 260.0 192 64.6
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 1.9e-67 259.6 196 67.3
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 5.6e-67 258.1 198 67.2
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 7.3e-67 257.7 193 64.8
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 7.3e-67 257.7 192 63.0
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 9.5e-67 257.3 192 64.1
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 1.2e-66 256.9 204 66.2
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 2.1e-66 256.1 199 66.8
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 3.6e-66 255.4 192 64.1
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 8.0e-66 254.2 198 65.7
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 1.0e-65 253.8 182 70.9
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 4.0e-65 251.9 199 65.8
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 5.2e-65 251.5 192 66.1
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 6.8e-65 251.1 202 63.9
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 1.5e-64 250.0 197 66.5
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 3.4e-64 248.8 191 67.5
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 1.3e-63 246.9 195 64.6
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 6.4e-63 244.6 193 64.8
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 8.3e-63 244.2 194 62.4
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 1.4e-62 243.4 197 64.5
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 1.8e-62 243.0 194 61.9
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 2.7e-61 239.2 188 66.0
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 1.1e-59 233.8 156 78.8
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 2.8e-58 229.2 193 61.7
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 6.2e-58 228.0 275 48.7
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 8.0e-58 227.6 193 60.6
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 4.4e-56 221.9 197 60.9
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 4.4e-56 221.9 197 60.9
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 5.8e-56 221.5 183 63.4
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.3e-55 220.3 197 60.4
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 2.2e-55 219.5 190 61.1
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 6.0e-53 211.5 195 59.5
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 1.0e-52 210.7 194 59.8
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 1.3e-52 210.3 187 58.8
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 8.6e-52 207.6 194 59.8
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 5.6e-51 204.9 194 58.2
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 9.5e-51 204.1 194 59.3
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 2.1e-50 203.0 192 57.8
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 2.8e-50 202.6 191 56.0
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.4e-49 200.3 185 59.5
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 5.8e-48 194.9 195 56.4
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 1.5e-43 180.3 148 58.8
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 1.2e-37 160.6 184 52.7
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 6.2e-34 148.3 117 67.5
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 4.0e-33 145.6 185 45.9
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 4.4e-32 142.1 115 65.2
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 1.7e-28 130.2 182 42.9
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 9.6e-27 124.4 115 60.9
Psat1g156280 Pisum sativum HOM05D006871 ORTHO05D008544 5.6e-19 98.6 123 52.0
MD05G1198200 Malus domestica HOM05D006871 ORTHO05D008544 3.7e-18 95.9 55 78.2
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 1.9e-11 73.6 77 48.1
Nitab4.5_0000119g0320 Nicotiana tabacum HOM05D006871 ORTHO05D008544 2.5e-11 73.2 49 67.3
Cre17.g726650 Chlamydomonas reinhardtii HOM05D006871 ORTHO05D008544 1.3e-10 70.9 192 30.7
MD03G1286500 Malus domestica HOM05D006871 ORTHO05D008544 3.1e-09 66.2 36 80.6
RcHm_v2.0_Chr2g0134071 Rosa chinensis HOM05D006871 ORTHO05D008544 8.4e-07 58.2 63 52.4
MCO15G582 Micromonas commoda HOM05D006871 ORTHO05D008544 1.9e-06 57.0 201 28.4


User provided reference genes

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