Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0957 Trochodendron aralioides HOM05D000085 ORTHO05D006184 1.2e-74 283.1 149 100.0
PSO541G3755 Papaver somniferum HOM05D000085 ORTHO05D006184 2.0e-48 196.1 142 69.7
Actinidia24490 Actinidia chinensis HOM05D000085 ORTHO05D006184 4.4e-48 194.9 139 73.4
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 1.7e-47 193.0 139 73.4
Manes.01G176300 Manihot esculenta HOM05D000085 ORTHO05D006184 6.4e-47 191.0 139 70.5
Actinidia01698 Actinidia chinensis HOM05D000085 ORTHO05D006184 6.0e-45 184.5 139 69.1
Aqoxy2G00032 Aquilegia oxysepala HOM05D000085 ORTHO05D006184 3.3e-43 178.7 142 66.2
MBI19_g24735_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D006184 7.3e-43 177.6 142 65.5
Thecc.09G256900 Theobroma cacao HOM05D000085 ORTHO05D006184 3.6e-42 175.3 139 64.0
Atru.chr3.2934 Acer truncatum HOM05D000003 ORTHO05D000006 4.0e-41 171.8 145 64.8
Duzib168G1166 Durio zibethinus HOM05D000085 ORTHO05D006184 4.0e-41 171.8 139 62.6
Cpa.g.sc33.152 Carica papaya HOM05D000085 ORTHO05D006184 1.2e-40 170.2 144 63.9
PSO675G2913 Papaver somniferum HOM05D000085 ORTHO05D006184 2.6e-40 169.1 142 62.0
TWI79G0144 Tripterygium wilfordii HOM05D000085 ORTHO05D006184 2.6e-40 169.1 139 61.9
Lj2A829G58 Lonicera japonica HOM05D000085 ORTHO05D006184 4.4e-40 168.3 142 62.7
Potri.001G224800 Populus trichocarpa HOM05D000085 ORTHO05D006184 9.9e-40 167.2 138 65.9
COL.COLO4_32861 Corchorus olitorius HOM05D000085 ORTHO05D006184 2.9e-39 165.6 145 59.3
Duzib128G0691 Durio zibethinus HOM05D000085 ORTHO05D006184 8.3e-39 164.1 144 57.6
Lj9A652T57 Lonicera japonica HOM05D000085 ORTHO05D006184 2.4e-38 162.5 140 64.3
Gohir.A10G191900 Gossypium hirsutum HOM05D000085 ORTHO05D006184 5.1e-36 154.8 144 53.5
Gohir.A07G036650 Gossypium hirsutum HOM05D000085 ORTHO05D006184 1.1e-35 153.7 140 57.9
Potri.001G035900 Populus trichocarpa HOM05D000085 ORTHO05D006184 1.1e-35 153.7 142 55.6
Gorai.001G043200 Gossypium raimondii HOM05D000085 ORTHO05D006184 2.5e-35 152.5 140 57.9
MBI19_g24736_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D006184 5.6e-35 151.4 142 57.0
QL01p020653 Quercus lobata HOM05D000085 ORTHO05D006184 7.3e-35 151.0 110 71.8
Potri.003G189850 Populus trichocarpa HOM05D000085 ORTHO05D006184 2.1e-34 149.4 142 57.0
Manes.04G153800 Manihot esculenta HOM05D000085 ORTHO05D006184 2.4e-33 146.0 140 54.3
FAN03G0175 Fragaria x ananassa HOM05D000085 ORTHO05D006184 3.1e-33 145.6 143 56.6
Thecc.10G132100 Theobroma cacao HOM05D000085 ORTHO05D006184 3.1e-33 145.6 144 54.9
FAN01G1090 Fragaria x ananassa HOM05D000085 ORTHO05D006184 4.0e-33 145.2 143 56.6
FAN06G0172 Fragaria x ananassa HOM05D000085 ORTHO05D006184 8.9e-33 144.1 143 55.9
FAN06G0213 Fragaria x ananassa HOM05D000085 ORTHO05D006184 8.9e-33 144.1 143 55.9
PGR119G1958 Punica granatum HOM05D000085 ORTHO05D006184 3.4e-32 142.1 140 56.4
FAN10G2237 Fragaria x ananassa HOM05D000085 ORTHO05D006184 1.7e-31 139.8 159 50.3
LjContig00564g0025361 Lotus japonicus HOM05D000085 ORTHO05D006184 1.4e-30 136.7 139 54.0
Phvul.008G204900 Phaseolus vulgaris HOM05D000085 ORTHO05D006184 1.9e-30 136.3 139 53.2
DCAR_018970 Daucus carota HOM05D000085 ORTHO05D006184 2.4e-30 136.0 140 55.7
Haze_02957 Corylus avellana HOM05D000085 ORTHO05D006184 4.1e-30 135.2 142 54.9
Lj6g0021794 Lotus japonicus HOM05D000085 ORTHO05D015977 4.1e-30 135.2 142 48.6
QL01p020611 Quercus lobata HOM05D000085 ORTHO05D006184 7.1e-30 134.4 113 66.4
Duzib114G0039 Durio zibethinus HOM05D000085 ORTHO05D006184 9.2e-30 134.0 176 44.3
VMungo0647G1792 Vigna mungo HOM05D000085 ORTHO05D006184 1.6e-29 133.3 139 50.4
Medtr4g128180 Medicago truncatula HOM05D000085 ORTHO05D006184 2.1e-29 132.9 137 53.3
Lsat_1_v5_gn_2_96380 Lactuca sativa HOM05D000085 ORTHO05D006184 4.6e-29 131.7 138 49.3
Gorai.011G223900 Gossypium raimondii HOM05D000085 ORTHO05D006184 7.8e-29 131.0 144 46.5
PGR031G0712 Punica granatum HOM05D000085 ORTHO05D006184 7.8e-29 131.0 151 48.3
TPR.G16401 Trifolium pratense HOM05D000085 ORTHO05D006184 7.8e-29 131.0 137 51.1
CsaV3_5G029350 Cucumis sativus L. HOM05D000085 ORTHO05D006184 2.3e-28 129.4 140 51.4
Gohir.D10G199700 Gossypium hirsutum HOM05D000085 ORTHO05D006184 2.3e-28 129.4 144 45.8
PGR044G1330 Punica granatum HOM05D000085 ORTHO05D006184 2.3e-28 129.4 145 45.5
Hma1.2p1_1711F.1_g298710 Hydrangea macrophylla HOM05D000085 ORTHO05D006184 3.9e-28 128.6 140 59.3
Medtr0205s0040 Medicago truncatula HOM05D000085 ORTHO05D015977 1.5e-27 126.7 142 47.2
CiPaw.13G018100 Carya illinoinensis HOM05D000085 ORTHO05D006184 1.9e-27 126.3 142 52.1
DCAR_029721 Daucus carota HOM05D000085 ORTHO05D006184 1.9e-27 126.3 141 52.5
arahy.Tifrunner.gnm1.ann1.F9JT0R Arachis hypogaea HOM05D000085 ORTHO05D006184 2.5e-27 125.9 139 48.2
arahy.Tifrunner.gnm1.ann1.RDL00W Arachis hypogaea HOM05D000085 ORTHO05D006184 4.3e-27 125.2 139 48.2
Psat0s2703g0120 Pisum sativum HOM05D000085 ORTHO05D006184 4.3e-27 125.2 137 51.1
MELO3C011783.2 Cucumis melo HOM05D000085 ORTHO05D006184 1.6e-26 123.2 140 50.0
Ca_13661_v3 Cicer arietinum L. HOM05D000085 ORTHO05D015977 6.2e-26 121.3 142 44.4
Ca_13663_v3 Cicer arietinum L. HOM05D000085 ORTHO05D015977 6.2e-26 121.3 142 44.4
Dinv03760 Davidia involucrata HOM05D000085 ORTHO05D006184 8.1e-26 120.9 144 48.6
CAN.G134.31 Capsicum annuum HOM05D000085 ORTHO05D006184 1.8e-25 119.8 139 46.8
TWI38G0146 Tripterygium wilfordii HOM05D000085 ORTHO05D006184 4.0e-25 118.6 143 53.1
Nitab4.5_0007610g0030 Nicotiana tabacum HOM05D000085 ORTHO05D006184 2.0e-24 116.3 139 47.5
PGR044G1040 Punica granatum HOM05D000085 ORTHO05D006184 2.6e-24 115.9 145 48.3
TWI63G1428 Tripterygium wilfordii HOM05D000085 ORTHO05D006184 2.6e-24 115.9 180 42.8
Nitab4.5_0004168g0020 Nicotiana tabacum HOM05D000085 ORTHO05D006184 5.8e-24 114.8 139 46.0
arahy.Tifrunner.gnm1.ann1.XR6IRG Arachis hypogaea HOM05D000085 ORTHO05D015977 1.4e-22 110.2 145 44.1
Oeu013040.1 Olea europaea HOM05D000085 ORTHO05D006184 1.4e-22 110.2 143 46.2
Sed0014409 Sechium edule HOM05D000085 ORTHO05D006184 1.4e-22 110.2 142 43.7
Ca_24049_v3 Cicer arietinum L. HOM05D000085 ORTHO05D006184 1.9e-22 109.8 142 47.2
Solyc01g096690.3 Solanum lycopersicum HOM05D000085 ORTHO05D006184 2.4e-22 109.4 136 44.9
PGSC0003DMG400003294 Solanum tuberosum HOM05D000085 ORTHO05D006184 3.2e-22 109.0 136 44.9
Lj1A1080T28 Lonicera japonica HOM05D000085 ORTHO05D006184 4.2e-22 108.6 145 44.1
arahy.Tifrunner.gnm1.ann1.T5TB3S Arachis hypogaea HOM05D000085 ORTHO05D015977 2.1e-21 106.3 145 42.8
TPR.G16382 Trifolium pratense HOM05D000085 ORTHO05D006184 7.8e-21 104.4 142 44.4
Dinv03741 Davidia involucrata HOM05D000085 ORTHO05D006184 3.0e-20 102.4 80 65.0
Sed0020592 Sechium edule HOM05D000085 ORTHO05D006184 6.6e-20 101.3 142 43.0
VMungo1127G0217 Vigna mungo HOM05D000085 ORTHO05D006184 8.7e-20 100.9 142 45.1
Cpa.g.sc34.209 Carica papaya HOM05D000085 ORTHO05D006184 2.5e-19 99.4 105 57.1
Prupe.2G050000 Prunus persica HOM05D000085 ORTHO05D006184 3.3e-19 99.0 95 56.8
Glyma.13G187600 Glycine max HOM05D000085 ORTHO05D006184 1.3e-18 97.1 142 43.7
Lsat_1_v5_gn_7_31301 Lactuca sativa HOM05D000085 ORTHO05D006184 6.2e-18 94.7 142 44.4
Phvul.011G191900 Phaseolus vulgaris HOM05D000085 ORTHO05D006184 1.4e-17 93.6 142 43.0
Lj3g0006871 Lotus japonicus HOM05D000085 ORTHO05D006184 1.8e-17 93.2 142 40.8
Glyma.04G126000 Glycine max HOM05D000085 ORTHO05D006184 2.4e-17 92.8 139 42.4
AagrBONN_evm.TU.Sc2ySwM_228.2886 Anthoceros agrestis HOM05D000085 ORTHO05D001756 3.1e-17 92.4 138 39.9
TPR.G11965 Trifolium pratense HOM05D000085 ORTHO05D015977 3.1e-17 92.4 145 40.7
VMungo1080G0919 Vigna mungo HOM05D000085 ORTHO05D006184 3.1e-17 92.4 143 44.1
FAN18G0517 Fragaria x ananassa HOM05D000085 ORTHO05D006184 5.3e-17 91.7 146 45.9
Glyma.06G312600 Glycine max HOM05D000085 ORTHO05D006184 1.5e-16 90.1 139 41.7
Phvul.005G013200 Phaseolus vulgaris HOM05D000085 ORTHO05D006184 2.0e-16 89.7 142 42.3
SEGI_07503 Sequoiadendron giganteum HOM05D008363 ORTHO05D006184 2.0e-16 89.7 142 38.7
DCAR_020608 Daucus carota HOM05D000085 ORTHO05D006184 5.8e-16 88.2 145 40.7
Glyma.13G187700 Glycine max HOM05D000085 ORTHO05D006184 5.8e-16 88.2 142 42.3
TPR.G30402 Trifolium pratense HOM05D000085 ORTHO05D006184 5.8e-16 88.2 142 36.6
Medtr3g011730 Medicago truncatula HOM05D000085 ORTHO05D006184 9.9e-16 87.4 142 38.0
ECA236G4574 Erigeron canadensis HOM05D000085 ORTHO05D006184 1.7e-15 86.7 144 39.6
ClCG11G012910 Citrullus lanatus HOM05D007159 ORTHO05D009068 2.9e-15 85.9 81 53.1
FAN08G3178 Fragaria x ananassa HOM05D000085 ORTHO05D006184 6.4e-15 84.7 75 56.0
Oeu044233.1 Olea europaea HOM05D000085 ORTHO05D006184 2.4e-14 82.8 144 40.3
MD02G1269800 Malus domestica HOM05D000085 ORTHO05D006184 5.4e-14 81.6 122 41.8
RcHm_v2.0_Chr1g0329671 Rosa chinensis HOM05D000085 ORTHO05D006184 1.2e-13 80.5 143 40.6
Pp3c8_1070 Physcomitrium patens HOM05D000085 ORTHO05D001756 3.5e-13 79.0 137 35.8
Glyma.02G276500 Glycine max HOM05D000085 ORTHO05D006184 4.6e-13 78.6 70 55.7
Oeu022997.1 Olea europaea HOM05D000085 ORTHO05D006184 6.0e-13 78.2 144 38.2
Actinidia29501 Actinidia chinensis HOM05D000085 ORTHO05D009791 1.9e-11 73.2 147 34.0
MSTRG.20454 Avicennia marina HOM05D000085 ORTHO05D006184 1.9e-11 73.2 102 43.1
Cpa.g.sc26.71 Carica papaya HOM05D000085 ORTHO05D009791 1.9e-11 73.2 148 33.1
Psat5g190960 Pisum sativum HOM05D000085 ORTHO05D015977 1.9e-11 73.2 75 45.3
arahy.Tifrunner.gnm1.ann1.VTKH3T Arachis hypogaea HOM05D000085 ORTHO05D006184 4.3e-11 72.0 139 34.5
MBI03_g20848_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D009791 5.6e-11 71.6 148 33.8
Oeu060763.1 Olea europaea HOM05D000046 ORTHO05D006184 5.6e-11 71.6 141 36.2
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.6e-10 70.1 135 30.4
Pp3c11_18470 Physcomitrium patens HOM05D000085 ORTHO05D001756 2.1e-10 69.7 140 32.9
Actinidia03435 Actinidia chinensis HOM05D000085 ORTHO05D009791 8.1e-10 67.8 147 32.7
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.1e-09 67.4 141 31.9
AagrBONN_evm.TU.Sc2ySwM_117.1415 Anthoceros agrestis HOM05D016224 ORTHO05D010508 3.1e-09 65.9 138 31.2
Lj1g0014811 Lotus japonicus HOM05D000085 ORTHO05D009791 5.3e-09 65.1 148 29.7
CSS0024542 Camellia sinensis var. sinensis HOM05D000085 ORTHO05D009791 9.0e-09 64.3 143 33.6
Pp3c7_3140 Physcomitrium patens HOM05D000085 ORTHO05D001756 1.5e-08 63.5 140 34.3
Peaxi162Scf00220g00239 Petunia axillaris HOM05D000085 ORTHO05D006184 2.0e-08 63.2 81 42.0
TPR.G6314 Trifolium pratense HOM05D000085 ORTHO05D009791 2.0e-08 63.2 148 29.7
VMungo1309G2437 Vigna mungo HOM05D000085 ORTHO05D009791 2.0e-08 63.2 148 32.4
Aqoxy6G00346 Aquilegia oxysepala HOM05D000485 ORTHO05D009791 4.5e-08 62.0 142 30.3
Medtr3g088855 Medicago truncatula HOM05D000085 ORTHO05D009791 4.5e-08 62.0 148 28.4
MBI09_g12163_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D011292 5.8e-08 61.6 139 25.9
Lj4A685T34 Lonicera japonica HOM05D000085 ORTHO05D009791 7.6e-08 61.2 148 29.7
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 7.6e-08 61.2 135 28.1
Migut.D00975 Erythranthe guttata HOM05D000085 ORTHO05D001756 1.7e-07 60.1 142 33.8
Phvul.009G133000 Phaseolus vulgaris HOM05D000085 ORTHO05D009791 1.7e-07 60.1 142 31.7
Psat5g083480 Pisum sativum HOM05D000085 ORTHO05D009791 1.7e-07 60.1 142 28.9
Manes.18G084900 Manihot esculenta HOM05D000085 ORTHO05D009791 2.2e-07 59.7 142 31.0
TAR628G0721 Trochodendron aralioides HOM05D000085 ORTHO05D009791 2.2e-07 59.7 148 30.4
Aqoxy2G00652 Aquilegia oxysepala HOM05D000085 ORTHO05D011292 3.8e-07 58.9 144 29.2
CANSAT56G3617 Cannabis sativa HOM05D000085 ORTHO05D001756 3.8e-07 58.9 142 30.3
Peaxi162Scf00220g00240 Petunia axillaris HOM05D000085 ORTHO05D006184 4.9e-07 58.5 58 53.4
Psat5g226720 Pisum sativum HOM05D000085 ORTHO05D006184 6.4e-07 58.2 77 39.0
Pp3c26_7470 Physcomitrium patens HOM05D026724 ORTHO05D020966 1.1e-06 57.4 137 29.2
arahy.Tifrunner.gnm1.ann1.NCK985 Arachis hypogaea HOM05D000085 ORTHO05D009791 1.9e-06 56.6 147 28.6
COL.COLO4_30643 Corchorus olitorius HOM05D000085 ORTHO05D001756 2.4e-06 56.2 141 33.3
Mapoly0095s0067 Marchantia polymorpha HOM05D008363 ORTHO05D010508 3.2e-06 55.8 137 27.7
DCAR_031504 Daucus carota HOM05D000085 ORTHO05D009791 5.5e-06 55.1 149 26.2
FAN08G2425 Fragaria x ananassa HOM05D000085 ORTHO05D011292 7.1e-06 54.7 140 27.1
HanXRQChr04g0095301 Helianthus annuus HOM05D000085 ORTHO05D001756 7.1e-06 54.7 145 30.3
Migut.C01091 Erythranthe guttata HOM05D000085 ORTHO05D009791 9.3e-06 54.3 144 27.8


User provided reference genes

Program Settings