Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0905 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.4e-108 396.4 207 100.0
MBI19_g19122_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 1.9e-86 322.8 205 81.0
Dinv24597 Davidia involucrata HOM05D006789 ORTHO05D008460 3.7e-85 318.5 207 81.6
Atru.chr3.2036 Acer truncatum HOM05D006789 ORTHO05D008460 1.3e-82 310.1 205 79.5
Hma1.2p1_0892F.1_g233210 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 2.5e-81 305.8 204 77.9
Gorai.N006500 Gossypium raimondii HOM05D006789 ORTHO05D008460 7.2e-81 304.3 208 75.5
Ciclev10029282m.g Citrus clementina HOM05D006789 ORTHO05D008460 9.4e-81 303.9 210 75.7
Gohir.A06G170900 Gossypium hirsutum HOM05D006789 ORTHO05D008460 1.2e-80 303.5 208 75.5
Gohir.D06G178700 Gossypium hirsutum HOM05D006789 ORTHO05D008460 1.0e-79 300.4 208 74.5
PGR044G1098 Punica granatum HOM05D006789 ORTHO05D008460 1.1e-78 297.0 214 73.4
TWI38G1707 Tripterygium wilfordii HOM05D006789 ORTHO05D008460 7.4e-78 294.3 212 74.1
arahy.Tifrunner.gnm1.ann1.G6AZCI Arachis hypogaea HOM05D006789 ORTHO05D008460 1.7e-77 293.1 207 74.9
arahy.Tifrunner.gnm1.ann1.KMQ9TB Arachis hypogaea HOM05D006789 ORTHO05D008460 1.7e-77 293.1 207 74.9
Duzib106G0468 Durio zibethinus HOM05D006789 ORTHO05D008460 2.2e-77 292.7 206 75.7
GSVIVG01027313001 Vitis vinifera HOM05D006789 ORTHO05D008460 2.8e-77 292.4 188 78.2
Nn2g14746 Nelumbo nucifera HOM05D006789 ORTHO05D008460 1.1e-76 290.4 193 78.2
Rhsim07G0072100 Rhododendron simsii HOM05D006789 ORTHO05D008460 2.4e-76 289.3 223 70.4
Thecc.10G129500 Theobroma cacao HOM05D006789 ORTHO05D008460 2.4e-76 289.3 219 70.3
Haze_03403 Corylus avellana HOM05D006789 ORTHO05D008460 4.1e-76 288.5 234 69.2
Lalb_Chr15g0079361 Lupinus albus HOM05D006789 ORTHO05D008460 6.9e-76 287.7 210 73.3
CiPaw.14G037500 Carya illinoinensis HOM05D006789 ORTHO05D008460 1.5e-75 286.6 207 74.4
Prupe.2G061000 Prunus persica HOM05D006789 ORTHO05D008460 1.0e-74 283.9 215 72.6
vmacro13786 Vaccinium macrocarpon HOM05D006789 ORTHO05D008460 1.7e-74 283.1 229 68.6
Manes.10G064901 Manihot esculenta HOM05D006789 ORTHO05D008460 3.8e-74 282.0 168 85.7
PSO339G2606 Papaver somniferum HOM05D006789 ORTHO05D008460 6.5e-74 281.2 202 71.3
Potri.008G012100 Populus trichocarpa HOM05D006789 ORTHO05D008460 1.9e-73 279.6 209 70.8
Aqoxy1G00021 Aquilegia oxysepala HOM05D006789 ORTHO05D008460 2.5e-73 279.3 176 80.1
Lj3g0008710 Lotus japonicus HOM05D006789 ORTHO05D008460 4.2e-73 278.5 199 72.9
Lsat_1_v5_gn_2_28141 Lactuca sativa HOM05D006789 ORTHO05D008460 7.2e-73 277.7 207 71.0
VMungo0647G0732 Vigna mungo HOM05D006789 ORTHO05D008460 7.2e-73 277.7 202 72.3
Glyma.04G129000 Glycine max HOM05D006789 ORTHO05D008460 1.6e-72 276.6 211 70.6
Glyma.06G315000 Glycine max HOM05D006789 ORTHO05D008460 1.6e-72 276.6 209 72.2
Sabra08G0007400 Salix brachista HOM05D006789 ORTHO05D008460 2.1e-72 276.2 174 79.9
MD02G1265000 Malus domestica HOM05D006789 ORTHO05D008460 2.7e-72 275.8 215 71.2
Hund00694 Selenicereus undatus HOM05D006789 ORTHO05D008460 2.7e-72 275.8 219 67.6
CANSAT56G4131 Cannabis sativa HOM05D006789 ORTHO05D008460 6.1e-72 274.6 212 69.8
DCAR_006626 Daucus carota HOM05D006789 ORTHO05D008460 1.0e-71 273.9 207 69.6
EL10Ac4g08777 Beta vulgaris HOM05D006789 ORTHO05D008460 1.4e-71 273.5 207 68.6
HanXRQChr06g0181521 Helianthus annuus HOM05D006789 ORTHO05D008460 1.8e-71 273.1 207 70.5
CsaV3_5G034990 Cucumis sativus L. HOM05D006789 ORTHO05D008460 2.3e-71 272.7 207 69.6
MSTRG.5084 Avicennia marina HOM05D006789 ORTHO05D008460 6.7e-71 271.2 217 68.2
BcaC06g32200 Brassica carinata HOM05D006789 ORTHO05D008460 6.7e-71 271.2 210 66.2
MELO3C012309.2 Cucumis melo HOM05D006789 ORTHO05D008460 6.7e-71 271.2 207 68.6
Oeu013184.1 Olea europaea HOM05D006789 ORTHO05D008460 8.8e-71 270.8 216 67.1
Phvul.008G161900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 8.8e-71 270.8 200 70.0
PSO384G0303 Papaver somniferum HOM05D006789 ORTHO05D008460 1.1e-70 270.4 203 69.5
Thhalv10014633m.g Eutrema salsugineum HOM05D006789 ORTHO05D008460 2.6e-70 269.2 213 66.2
Medtr3g006790 Medicago truncatula HOM05D006789 ORTHO05D008460 5.7e-70 268.1 208 70.7
SGA_v2.0_scaffold196G40989 Striga asiatica HOM05D006789 ORTHO05D008460 5.7e-70 268.1 185 73.0
SGA_v2.0_scaffold196G40996 Striga asiatica HOM05D006789 ORTHO05D008460 5.7e-70 268.1 185 73.5
THA.LOC104826955 Tarenaya hassleriana HOM05D006789 ORTHO05D008460 5.7e-70 268.1 216 66.2
Eucgr.J00312 Eucalyptus grandis HOM05D006789 ORTHO05D008460 7.4e-70 267.7 200 70.0
ClCG05G022140 Citrullus lanatus HOM05D006789 ORTHO05D008460 9.7e-70 267.3 210 67.6
TPR.G25521 Trifolium pratense HOM05D006789 ORTHO05D008460 9.7e-70 267.3 210 70.0
A10p31220 Brassica napus HOM05D006789 ORTHO05D008460 3.7e-69 265.4 211 66.8
BraA10t45166Z Brassica rapa HOM05D006789 ORTHO05D008460 3.7e-69 265.4 211 66.8
SalBow4G0168 Salvia bowleyana HOM05D006789 ORTHO05D008460 4.8e-69 265.0 201 68.2
AT5G04910 Arabidopsis thaliana HOM05D006789 ORTHO05D008460 6.3e-69 264.6 217 63.1
BolC9t59933H Brassica oleracea HOM05D006789 ORTHO05D008460 8.2e-69 264.2 211 66.8
Peaxi162Scf00217g00626 Petunia axillaris HOM05D006789 ORTHO05D008460 8.2e-69 264.2 206 68.0
Carub.0006s0385 Capsella rubella HOM05D006789 ORTHO05D008460 1.1e-68 263.8 210 65.7
CDE08G0307 Ceratophyllum demersum HOM05D006789 ORTHO05D008460 1.8e-68 263.1 193 72.0
C09p71840 Brassica napus HOM05D006789 ORTHO05D008460 2.4e-68 262.7 211 66.4
Actinidia19614 Actinidia chinensis HOM05D000583 ORTHO05D000442 7.0e-68 261.2 168 81.5
AL6G14600 Arabidopsis lyrata HOM05D006789 ORTHO05D008460 7.0e-68 261.2 217 63.1
Sp6g37890 Schrenkiella parvula HOM05D006789 ORTHO05D008460 1.2e-67 260.4 213 64.3
COL.COLO4_28906 Corchorus olitorius HOM05D006789 ORTHO05D008460 1.6e-67 260.0 157 84.1
FvH4_7g05010 Fragaria vesca HOM05D006789 ORTHO05D008460 4.5e-67 258.5 207 66.7
Gorai.010G208300 Gossypium raimondii HOM05D006789 ORTHO05D008460 5.9e-67 258.1 159 83.0
RcHm_v2.0_Chr1g0331321 Rosa chinensis HOM05D006789 ORTHO05D008460 5.9e-67 258.1 219 64.4
Solyc10g039380.2 Solanum lycopersicum HOM05D006789 ORTHO05D008460 5.9e-67 258.1 200 68.5
Gorai.N006000 Gossypium raimondii HOM05D006789 ORTHO05D008460 7.7e-67 257.7 156 84.0
Sopen10g012840 Solanum pennellii HOM05D006789 ORTHO05D008460 1.3e-66 256.9 200 68.0
ECA238G4254 Erigeron canadensis HOM05D006789 ORTHO05D008460 1.7e-66 256.5 209 65.6
FAN06G2149 Fragaria x ananassa HOM05D006789 ORTHO05D008460 2.2e-66 256.1 213 64.8
Sc22g0002280 Simmondsia chinensis HOM05D006789 ORTHO05D001455 2.2e-66 256.1 200 69.5
Sed0016797 Sechium edule HOM05D006789 ORTHO05D008460 3.8e-66 255.4 207 66.2
CSS0000309 Camellia sinensis var. sinensis HOM05D006789 ORTHO05D008460 1.5e-65 253.4 286 53.8
Zm00001eb128210 Zea mays HOM05D006789 ORTHO05D008460 7.2e-65 251.1 194 69.1
Os01g0265700 Oryza sativa ssp. japonica HOM05D006789 ORTHO05D008460 9.4e-65 250.8 179 70.9
Hma1.2p1_0892F.1_g233220 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 1.0e-63 247.3 150 83.3
MBI05_g14944_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 2.2e-61 239.6 159 76.1
Gohir.A06G170906 Gossypium hirsutum HOM05D006789 ORTHO05D008460 2.8e-61 239.2 154 80.5
Lj7C491T7 Lonicera japonica HOM05D006789 ORTHO05D008460 2.8e-61 239.2 152 82.2
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 4.8e-61 238.4 148 80.4
Aa31LG11G5790 Aethionema arabicum HOM05D006789 ORTHO05D008460 1.8e-60 236.5 218 58.7
ATR0068G087 Amborella trichopoda HOM05D006789 ORTHO05D008460 4.1e-60 235.3 151 78.1
Migut.N01877 Erythranthe guttata HOM05D006789 ORTHO05D008460 5.3e-60 235.0 214 64.0
Gohir.D06G178832 Gossypium hirsutum HOM05D006789 ORTHO05D008460 1.2e-59 233.8 156 77.6
Nitab4.5_0004033g0070 Nicotiana tabacum HOM05D006789 ORTHO05D008460 1.6e-59 233.4 155 76.8
FAN03G1759 Fragaria x ananassa HOM05D006789 ORTHO05D008460 2.9e-58 229.2 211 62.6
Cc02_g32010 Coffea canephora HOM05D006789 ORTHO05D008460 6.5e-58 228.0 158 73.4
Sed0010043 Sechium edule HOM05D006789 ORTHO05D008460 8.5e-58 227.6 205 61.0
Nitab4.5_0002156g0010 Nicotiana tabacum HOM05D006789 ORTHO05D008460 7.2e-57 224.6 155 74.2
SEGI_32817 Sequoiadendron giganteum HOM05D006789 ORTHO05D008460 3.6e-56 222.2 157 68.8
Carub.0010s0003 Capsella rubella HOM05D006789 ORTHO05D008460 2.3e-55 219.5 163 68.7
FAN01G0280 Fragaria x ananassa HOM05D006789 ORTHO05D008460 9.1e-52 207.6 207 58.5
unitig_26.g9495 Utricularia gibba HOM05D006789 ORTHO05D008460 2.1e-48 196.4 206 51.9
AUR62014306 Chenopodium quinoa HOM05D006789 ORTHO05D008460 8.9e-47 191.0 183 57.4
Psat5g230200 Pisum sativum HOM05D006789 ORTHO05D008460 1.2e-43 180.6 122 77.9
Cfa010449 Carpinus fangiana HOM05D006789 ORTHO05D008460 6.8e-39 164.9 127 70.9
Actinidia29655 Actinidia chinensis HOM05D006789 ORTHO05D008460 1.2e-38 164.1 200 54.0
Pp3c10_8520 Physcomitrium patens HOM05D006789 ORTHO05D008460 9.8e-38 161.0 170 50.6
Gorai.010G208600 Gossypium raimondii HOM05D006789 ORTHO05D008460 1.3e-37 160.6 158 62.0
TAR633G1630 Trochodendron aralioides HOM05D006789 ORTHO05D008460 4.1e-36 155.6 86 94.2
TAR629G1007 Trochodendron aralioides HOM05D001508 ORTHO05D008460 3.5e-35 152.5 79 98.7
Mapoly0023s0087 Marchantia polymorpha HOM05D006789 ORTHO05D008460 4.6e-35 152.1 185 46.5
CARHR208350 Cardamine hirsuta HOM05D006789 ORTHO05D008460 1.1e-33 147.5 87 82.8
SMO364G0543 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 6.2e-32 141.7 181 45.9
Ca_14025_v3 Cicer arietinum L. HOM05D006789 ORTHO05D008460 2.6e-30 136.3 120 63.3
SMO353G0288 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 5.1e-26 122.1 171 43.9
TAR636G3403 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.6e-24 117.1 72 84.7
Cfa005731 Carpinus fangiana HOM05D012552 ORTHO05D018926 3.6e-24 115.9 82 73.2
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 2.0e-22 110.2 105 61.9
BcaB03g15210 Brassica carinata HOM05D006789 ORTHO05D008460 1.9e-20 103.6 94 61.7
Phvul.005G010900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 1.1e-17 94.4 99 55.6
AUR62034099 Chenopodium quinoa HOM05D006789 ORTHO05D008460 5.6e-17 92.0 61 73.8
Cfa010304 Carpinus fangiana HOM05D012552 ORTHO05D018926 8.9e-15 84.7 85 61.2
CBR_g54451 Chara braunii HOM05D003248 ORTHO05D000301 1.3e-13 80.9 116 39.7
SHI21242 Sapria himalayana HOM05D006789 ORTHO05D008460 4.2e-12 75.9 77 53.2
Cre16.g683483 Chlamydomonas reinhardtii HOM05D006789 ORTHO05D008460 7.8e-11 71.6 96 40.6
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 2.3e-10 70.1 72 50.0
MCO03G486 Micromonas commoda HOM05D006789 ORTHO05D008460 4.7e-08 62.4 234 29.5


User provided reference genes

Program Settings