Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 0.0e+00 1288.5 642 100.0
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 2.2e-269 932.2 637 71.6
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 1.8e-247 859.4 631 66.6
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 2.3e-242 842.4 647 65.1
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 2.3e-234 815.8 645 64.0
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 4.7e-232 808.1 631 63.9
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 5.2e-231 804.7 640 63.0
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 1.2e-230 803.5 640 63.8
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 3.1e-223 778.9 645 63.1
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 5.8e-222 774.6 635 61.7
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 1.3e-221 773.5 643 61.3
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 4.6e-219 765.0 646 60.1
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 5.6e-217 758.1 639 60.4
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 7.4e-217 757.7 631 61.3
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 2.1e-216 756.1 629 60.9
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 2.1e-216 756.1 637 60.1
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 2.8e-216 755.7 640 60.6
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 1.8e-215 753.1 623 63.4
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.1e-215 752.3 636 60.5
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 5.3e-215 751.5 641 60.4
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 5.3e-215 751.5 543 68.3
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 1.5e-214 750.0 623 61.6
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 2.0e-214 749.6 636 60.8
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.0e-214 749.6 636 60.8
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.8e-213 745.3 637 59.8
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 6.4e-213 744.6 633 60.3
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 8.4e-213 744.2 637 60.3
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 1.9e-212 743.0 631 60.2
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 7.1e-212 741.1 640 58.9
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 7.1e-212 741.1 645 59.1
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 3.5e-211 738.8 642 58.6
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 3.5e-211 738.8 640 58.8
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 6.7e-210 734.6 633 60.0
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 9.6e-209 730.7 647 58.9
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 2.1e-208 729.6 632 59.2
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 1.4e-207 726.9 445 77.5
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 5.3e-207 724.9 629 59.3
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 9.0e-207 724.2 620 60.5
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 9.0e-207 724.2 632 59.0
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.5e-206 723.4 630 60.2
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 5.8e-206 721.5 637 57.9
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 3.8e-205 718.8 632 59.5
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 1.1e-204 717.2 652 56.9
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 1.9e-204 716.5 632 58.1
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 9.3e-204 714.1 502 69.3
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 2.7e-203 712.6 633 57.5
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 3.5e-203 712.2 642 58.1
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 3.9e-202 708.8 631 57.5
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 6.7e-202 708.0 642 57.9
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 2.5e-201 706.1 630 58.1
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 9.6e-201 704.1 642 57.3
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 1.6e-200 703.4 631 56.4
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 4.1e-199 698.7 530 66.4
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 1.2e-198 697.2 610 58.2
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 4.5e-198 695.3 642 55.3
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 4.5e-198 695.3 495 68.9
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 4.5e-198 695.3 495 68.9
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 2.5e-196 689.5 636 56.1
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 4.6e-195 685.3 646 55.0
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 7.4e-193 677.9 638 55.8
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 4.8e-192 675.2 640 54.8
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 3.4e-190 669.1 638 54.4
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 5.9e-190 668.3 631 54.8
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 5.9e-190 668.3 636 53.8
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 6.5e-189 664.8 639 54.8
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 3.2e-188 662.5 641 53.8
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 4.2e-188 662.1 707 51.6
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 1.6e-187 660.2 641 53.0
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 3.6e-187 659.1 639 54.1
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 3.6e-187 659.1 441 71.4
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 4.6e-187 658.7 637 53.1
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 7.9e-187 657.9 532 63.9
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 2.3e-186 656.4 639 52.7
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 3.0e-186 656.0 632 53.8
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 3.9e-186 655.6 639 52.6
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 2.6e-185 652.9 629 54.4
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 4.8e-184 648.7 587 55.4
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 9.1e-183 644.4 552 59.6
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 1.5e-182 643.7 638 52.4
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 1.7e-181 640.2 545 59.4
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 5.0e-181 638.6 657 53.4
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 5.0e-181 638.6 538 60.4
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 3.9e-178 629.0 522 57.9
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 4.1e-175 619.0 528 58.3
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 1.7e-173 613.6 621 53.6
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 2.6e-169 599.7 391 72.6
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 2.6e-169 599.7 391 72.6
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 1.7e-168 597.0 455 65.9
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 2.4e-167 593.2 615 51.7
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 1.6e-166 590.5 563 54.4
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 8.5e-165 584.7 387 73.6
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 9.4e-164 581.3 531 57.4
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 1.4e-162 577.4 635 49.3
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 4.0e-162 575.9 384 71.9
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 4.0e-162 575.9 387 72.4
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.4e-161 572.8 519 58.2
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 2.8e-160 569.7 401 69.1
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 8.8e-154 548.1 385 68.3
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 1.8e-151 540.4 505 55.8
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 7.8e-150 535.0 543 50.6
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 7.3e-140 501.9 382 63.9
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 8.0e-139 498.4 460 56.3
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.2e-138 495.7 490 54.3
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 2.6e-137 493.4 508 50.8
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 2.6e-137 493.4 493 53.3
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 1.8e-130 470.7 489 51.1
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 2.0e-129 467.2 460 52.6
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 7.5e-129 465.3 502 49.4
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 2.3e-125 453.8 340 63.8
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.4e-119 433.7 379 56.2
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 4.1e-119 433.0 509 45.2
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 1.5e-113 414.5 299 69.6
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 2.0e-105 387.5 258 70.2
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.2e-104 384.0 510 42.7
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 3.5e-102 376.7 347 56.8
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 2.8e-99 367.1 499 40.1
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.4e-98 364.0 385 49.4
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 6.9e-98 362.5 276 62.3
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 2.0e-97 360.9 303 58.1
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.6e-83 314.7 492 38.6
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.4e-77 295.0 203 66.5
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 9.7e-60 235.7 160 67.5
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 4.4e-52 210.3 256 46.9
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 1.2e-49 202.2 133 67.7
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 3.8e-48 197.2 250 45.2
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 5.0e-48 196.8 195 47.2
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 9.8e-44 182.6 234 46.6
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.1e-42 177.6 225 44.4
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 4.1e-42 177.2 121 66.1
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 7.2e-39 166.4 126 67.5
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 8.0e-38 162.9 151 54.3
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.0e-37 161.0 126 65.1
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 7.5e-36 156.4 146 53.4
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 1.4e-26 125.6 139 52.5
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 9.2e-26 122.9 92 65.2
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 5.1e-16 90.5 159 38.4
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.8e-13 82.0 143 37.8
Hund21883 Selenicereus undatus HOM05D005279 ORTHO05D037448 4.9e-11 73.9 59 61.0
Hund30008 Selenicereus undatus HOM05D005279 ORTHO05D037448 4.9e-11 73.9 59 61.0
QL01p050333 Quercus lobata HOM05D005279 ORTHO05D037448 9.2e-10 69.7 52 67.3


User provided reference genes

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