Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 1.7e-42 175.6 90 100.0
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 9.5e-30 133.3 97 74.2
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.6e-29 132.5 91 74.7
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.5e-27 125.9 90 73.3
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 1.1e-25 119.8 97 64.9
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 1.1e-25 119.8 95 65.3
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.0e-23 113.2 101 60.4
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 8.6e-23 110.2 100 60.0
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 3.3e-22 108.2 102 55.9
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 2.1e-21 105.5 97 60.8
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 2.8e-21 105.1 99 59.6
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 3.6e-21 104.8 94 58.5
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.4e-20 102.8 90 62.2
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 1.8e-20 102.4 81 65.4
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 1.8e-20 102.4 98 54.1
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 1.8e-20 102.4 98 54.1
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 1.8e-20 102.4 98 57.1
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 1.8e-20 102.4 98 58.2
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 5.2e-20 100.9 96 57.3
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 1.2e-19 99.8 93 63.4
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.2e-19 99.8 89 61.8
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 4.4e-19 97.8 91 56.0
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 4.4e-19 97.8 93 55.9
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 4.4e-19 97.8 98 53.1
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 2.2e-18 95.5 99 52.5
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 2.2e-18 95.5 96 55.2
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 2.2e-18 95.5 89 53.9
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 1.1e-17 93.2 89 53.9
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 1.9e-17 92.4 87 54.0
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 2.4e-17 92.0 105 55.2
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 2.4e-17 92.0 80 60.0
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 2.4e-17 92.0 103 52.4
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 9.2e-17 90.1 85 60.0
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.2e-16 89.7 103 50.5
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 1.2e-16 89.7 71 66.2
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.6e-16 89.4 105 49.5
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 2.1e-16 89.0 103 50.5
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 2.7e-16 88.6 91 52.7
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 6.0e-16 87.4 92 53.3
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 5.1e-15 84.3 95 51.6
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 8.7e-15 83.6 97 49.5
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.5e-14 82.8 98 50.0
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 1.9e-14 82.4 93 53.8
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.9e-14 82.4 94 54.3
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 1.9e-14 82.4 94 54.3
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 1.9e-14 82.4 88 58.0
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 2.5e-14 82.0 89 52.8
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 5.6e-14 80.9 86 53.5
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 9.6e-14 80.1 90 56.7
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 9.6e-14 80.1 87 50.6
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 1.6e-13 79.3 91 51.6
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 2.8e-13 78.6 95 49.5
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 3.6e-13 78.2 85 49.4
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 1.1e-12 76.6 94 50.0
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 1.4e-12 76.3 86 47.7
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.8e-12 75.9 94 52.1
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 2.4e-12 75.5 81 50.6
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 2.4e-12 75.5 99 44.4
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 4.0e-12 74.7 89 49.4
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 5.3e-12 74.3 94 50.0
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 5.3e-12 74.3 88 48.9
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 9.0e-12 73.6 80 53.8
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 9.0e-12 73.6 88 48.9
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 9.0e-12 73.6 90 46.7
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 2.0e-11 72.4 92 44.6
Ciclev10027461m.g Citrus clementina HOM05D007574 ORTHO05D007552 2.6e-11 72.0 89 47.2
MBI14_g13884_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 2.6e-11 72.0 71 59.2
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 3.4e-11 71.6 81 49.4
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 4.4e-11 71.2 89 49.4
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 4.4e-11 71.2 98 53.1
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 4.4e-11 71.2 90 50.0
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 5.8e-11 70.9 88 47.7
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 5.8e-11 70.9 47 63.8
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 7.6e-11 70.5 76 48.7
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 1.7e-10 69.3 75 53.3
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 2.2e-10 68.9 75 49.3
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 2.9e-10 68.6 77 45.5
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 3.8e-10 68.2 78 53.8
COL.COLO4_18585 Corchorus olitorius HOM05D007574 ORTHO05D007552 1.1e-09 66.6 90 44.4
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 1.1e-09 66.6 82 47.6
Os05g0456900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 1.9e-09 65.9 85 44.7
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 2.4e-09 65.5 103 45.6
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 2.4e-09 65.5 103 45.6
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 4.2e-09 64.7 103 45.6
Thecc.09G313900 Theobroma cacao HOM05D007574 ORTHO05D007552 5.4e-09 64.3 47 63.8
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 7.1e-09 63.9 89 42.7
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 1.6e-08 62.8 83 44.6
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 2.1e-08 62.4 55 60.0
Prupe.6G068600 Prunus persica HOM05D007574 ORTHO05D007552 3.5e-08 61.6 89 40.4
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 1.3e-07 59.7 94 42.6
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 1.7e-07 59.3 85 41.2
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 2.3e-07 58.9 91 46.2
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 2.3e-07 58.9 90 37.8
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 3.0e-07 58.5 94 41.5
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 3.0e-07 58.5 94 41.5
BcaB06g29026 Brassica carinata HOM05D009505 ORTHO05D007552 5.1e-07 57.8 93 40.9
Lsat_1_v5_gn_6_117001 Lactuca sativa HOM05D007574 ORTHO05D007552 1.1e-06 56.6 65 53.8
Sp4g20120 Schrenkiella parvula HOM05D009505 ORTHO05D007552 1.1e-06 56.6 93 40.9
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 1.1e-06 56.6 94 41.5
Aqoxy1G00836 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 1.5e-06 56.2 82 45.1
BcaB01g03759 Brassica carinata HOM05D009505 ORTHO05D007552 1.5e-06 56.2 94 40.4
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 1.5e-06 56.2 56 58.9
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 2.5e-06 55.5 84 38.1
Sed0004672 Sechium edule HOM05D039850 ORTHO05D034976 2.5e-06 55.5 92 41.3
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 7.3e-06 53.9 78 41.0
Ah.01g023650 Amaranthus hybridus HOM05D007574 ORTHO05D007552 9.6e-06 53.5 94 42.6
BcaB02g09253 Brassica carinata HOM05D009505 ORTHO05D007552 9.6e-06 53.5 86 40.7
BcaB02g09254 Brassica carinata HOM05D009505 ORTHO05D007552 9.6e-06 53.5 86 40.7
Os01g0143900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 9.6e-06 53.5 62 46.8


User provided reference genes

Program Settings