Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 1.5e-74 282.7 138 100.0
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.2e-49 199.1 121 80.2
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 4.8e-49 198.0 112 85.7
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.1e-48 196.8 132 75.8
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 1.1e-48 196.8 112 84.8
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 3.1e-48 195.3 114 83.3
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 3.1e-48 195.3 114 84.2
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 5.3e-48 194.5 112 85.7
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 9.1e-48 193.7 114 83.3
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 9.1e-48 193.7 114 83.3
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 2.0e-47 192.6 114 83.3
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.6e-47 192.2 114 83.3
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.6e-47 192.2 114 83.3
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 2.6e-47 192.2 114 82.5
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 2.6e-47 192.2 114 84.2
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 4.5e-47 191.4 113 84.1
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 5.9e-47 191.0 112 82.1
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 7.7e-47 190.7 111 82.0
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 1.0e-46 190.3 114 81.6
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 1.0e-46 190.3 114 82.5
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 1.0e-46 190.3 114 79.8
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 1.7e-46 189.5 112 82.1
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 1.7e-46 189.5 112 82.1
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 2.2e-46 189.1 119 80.7
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.2e-46 189.1 112 82.1
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 3.8e-46 188.3 114 83.3
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 3.8e-46 188.3 112 82.1
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 3.8e-46 188.3 112 83.0
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 5.0e-46 188.0 114 80.7
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 6.5e-46 187.6 118 78.0
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 6.5e-46 187.6 114 82.5
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 6.5e-46 187.6 111 83.8
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 6.5e-46 187.6 112 82.1
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 1.1e-45 186.8 115 80.9
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 1.1e-45 186.8 112 82.1
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 1.1e-45 186.8 136 70.6
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 1.5e-45 186.4 114 80.7
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 1.9e-45 186.0 111 82.9
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 1.9e-45 186.0 112 80.4
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 1.9e-45 186.0 112 82.1
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 1.9e-45 186.0 114 79.8
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 1.9e-45 186.0 110 82.7
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 2.5e-45 185.7 114 79.8
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 2.5e-45 185.7 114 80.7
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.5e-45 185.7 115 78.3
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 4.2e-45 184.9 112 79.5
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 5.5e-45 184.5 112 79.5
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 7.2e-45 184.1 110 80.0
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 9.4e-45 183.7 112 79.5
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 9.4e-45 183.7 109 82.6
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 9.4e-45 183.7 112 80.4
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 9.4e-45 183.7 111 81.1
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 1.2e-44 183.3 114 78.9
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.6e-44 183.0 112 78.6
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 2.1e-44 182.6 129 72.1
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 2.1e-44 182.6 112 81.2
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 3.6e-44 181.8 135 65.9
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 3.6e-44 181.8 113 77.0
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 3.6e-44 181.8 110 83.6
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 4.7e-44 181.4 112 78.6
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 6.1e-44 181.0 112 78.6
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 8.0e-44 180.6 114 77.2
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 3.0e-43 178.7 114 77.2
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 3.0e-43 178.7 129 69.0
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 4.0e-43 178.3 112 78.6
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 5.2e-43 177.9 112 79.5
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 5.2e-43 177.9 112 78.6
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 8.8e-43 177.2 112 77.7
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 8.8e-43 177.2 112 76.8
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.5e-42 176.4 124 71.0
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.5e-42 176.4 112 77.7
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 2.0e-42 176.0 112 77.7
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 2.0e-42 176.0 112 78.6
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 3.4e-42 175.3 112 76.8
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 4.4e-42 174.9 112 77.7
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 4.4e-42 174.9 112 77.7
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 4.4e-42 174.9 112 77.7
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 4.4e-42 174.9 112 75.9
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 5.7e-42 174.5 112 75.9
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 7.5e-42 174.1 112 77.7
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 9.8e-42 173.7 112 76.8
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 9.8e-42 173.7 112 76.8
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 1.3e-41 173.3 111 78.4
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 6.3e-41 171.0 107 79.4
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 6.3e-41 171.0 110 73.6
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.1e-40 168.3 112 75.0
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 1.2e-39 166.8 112 70.5
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 1.7e-38 162.9 114 67.5
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 3.8e-38 161.8 109 72.5
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 5.0e-38 161.4 114 71.9
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 8.5e-38 160.6 116 70.7
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.1e-37 160.2 124 65.3
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 1.1e-37 160.2 109 69.7
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 1.5e-37 159.8 114 69.3
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.9e-37 159.5 106 76.4
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 2.5e-37 159.1 106 73.6
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 4.2e-37 158.3 109 72.5
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 1.2e-36 156.8 114 67.5
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 2.7e-36 155.6 107 72.0
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 1.0e-35 153.7 109 69.7
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 1.0e-35 153.7 122 62.3
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.8e-35 152.9 114 65.8
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 4.0e-35 151.8 112 68.8
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.0e-35 151.8 127 63.8
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 8.8e-35 150.6 94 78.7
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 1.2e-34 150.2 103 68.0
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.2e-34 150.2 114 63.2
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 2.6e-34 149.1 112 65.2
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 4.4e-34 148.3 123 61.0
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 7.5e-34 147.5 91 79.1
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 9.8e-34 147.1 94 78.7
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.3e-33 146.7 112 64.3
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 1.8e-32 142.9 112 68.8
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 5.4e-32 141.4 96 69.8
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.2e-31 140.2 76 82.9
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.0e-31 139.4 112 60.7
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.7e-31 139.0 111 67.6
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 4.5e-31 138.3 110 67.3
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 4.5e-31 138.3 102 65.7
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 1.0e-30 137.1 112 58.9
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 1.7e-30 136.3 111 62.2
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 7.2e-29 131.0 111 64.0
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 7.2e-29 131.0 112 57.1
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 1.0e-27 127.1 112 53.6
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 1.4e-27 126.7 86 68.6
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 1.2e-26 123.6 103 61.2
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 1.5e-26 123.2 117 59.8
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 4.9e-25 118.2 70 82.9
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 8.3e-25 117.5 70 81.4
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.4e-24 116.7 79 65.8
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.8e-24 116.3 69 81.2
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 2.0e-23 112.8 94 63.8
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 2.0e-23 112.8 112 58.9
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 7.8e-23 110.9 71 76.1
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 2.3e-22 109.4 69 78.3
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.2e-20 103.6 90 65.6
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 6.8e-19 97.8 68 61.8
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 2.0e-18 96.3 123 48.8
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 5.8e-18 94.7 70 68.6
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.8e-18 94.7 121 49.6
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 9.2e-16 87.4 62 69.4
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 1.2e-15 87.0 107 49.5
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.1e-11 73.9 114 43.9
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 1.4e-11 73.6 70 57.1
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 4.0e-11 72.0 50 72.0
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 2.0e-10 69.7 115 40.0
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.4e-08 63.5 47 55.3
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 1.2e-07 60.5 37 73.0
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.9e-06 55.5 42 64.3


User provided reference genes

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