Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0716 Trochodendron aralioides HOM05D000286 ORTHO05D000170 2.8e-61 238.4 118 100.0
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 1.0e-23 113.6 164 39.6
Medtr1g095110 Medicago truncatula HOM05D000286 ORTHO05D000170 1.7e-23 112.8 164 39.6
FvH4_7g19610 Fragaria vesca HOM05D000286 ORTHO05D000170 3.9e-23 111.7 164 39.0
FAN03G2812 Fragaria x ananassa HOM05D000286 ORTHO05D000170 3.9e-23 111.7 164 39.0
FAN10G4112 Fragaria x ananassa HOM05D000286 ORTHO05D000170 3.9e-23 111.7 164 39.0
Glyma.10G211200 Glycine max HOM05D000286 ORTHO05D000170 8.7e-23 110.5 164 38.4
Prupe.2G213900 Prunus persica HOM05D000286 ORTHO05D000170 8.7e-23 110.5 165 39.4
VMungo0720G2421 Vigna mungo HOM05D000286 ORTHO05D000170 1.1e-22 110.2 164 39.0
CiPaw.02G174100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.5e-22 109.8 163 39.3
MD01G1108700 Malus domestica HOM05D000286 ORTHO05D000170 1.5e-22 109.8 165 40.0
CANSAT56G2511 Cannabis sativa HOM05D000286 ORTHO05D000170 1.9e-22 109.4 163 39.3
QL08p056010 Quercus lobata HOM05D000286 ORTHO05D000170 2.5e-22 109.0 166 39.2
Phvul.007G094400 Phaseolus vulgaris HOM05D000286 ORTHO05D000170 3.3e-22 108.6 164 38.4
Rhsim09G0152100 Rhododendron simsii HOM05D000286 ORTHO05D000170 4.3e-22 108.2 164 37.8
Cfa021510 Carpinus fangiana HOM05D000286 ORTHO05D000170 5.6e-22 107.8 166 39.2
CiPaw.01G273000 Carya illinoinensis HOM05D000286 ORTHO05D000170 7.3e-22 107.5 163 38.7
Psat6g204840 Pisum sativum HOM05D000286 ORTHO05D000170 7.3e-22 107.5 164 37.8
vmacro04874 Vaccinium macrocarpon HOM05D000286 ORTHO05D000170 7.3e-22 107.5 165 37.6
PSO384G2161 Papaver somniferum HOM05D000286 ORTHO05D000170 1.3e-21 106.7 163 39.9
HPP92_002593 Vanilla planifolia HOM05D000286 ORTHO05D000170 1.3e-21 106.7 164 36.6
Carub.0006s1762 Capsella rubella HOM05D000286 ORTHO05D000170 1.6e-21 106.3 164 37.8
Haze_16894 Corylus avellana HOM05D000286 ORTHO05D000170 1.6e-21 106.3 166 38.6
PSO339G3832 Papaver somniferum HOM05D000286 ORTHO05D000170 1.6e-21 106.3 163 39.3
TWI63G1713 Tripterygium wilfordii HOM05D000286 ORTHO05D000170 1.6e-21 106.3 167 37.7
AL6G30770 Arabidopsis lyrata HOM05D000286 ORTHO05D000170 2.1e-21 105.9 164 37.8
BcaC03g13662 Brassica carinata HOM05D000286 ORTHO05D000170 2.8e-21 105.5 164 37.2
A02p05460 Brassica napus HOM05D000286 ORTHO05D000170 2.8e-21 105.5 164 37.2
BNapus_Darmor_BZH_scaffold_38p02650 Brassica napus HOM05D000286 ORTHO05D000170 2.8e-21 105.5 164 37.2
BraA02t05497Z Brassica rapa HOM05D000286 ORTHO05D000170 2.8e-21 105.5 164 37.2
Ca_10571_v3 Cicer arietinum L. HOM05D000286 ORTHO05D000170 2.8e-21 105.5 174 38.5
Lj1A914T38 Lonicera japonica HOM05D000286 ORTHO05D000170 2.8e-21 105.5 163 37.4
Actinidia03064 Actinidia chinensis HOM05D000286 ORTHO05D000170 3.6e-21 105.1 166 39.2
BolC2t06953H Brassica oleracea HOM05D000286 ORTHO05D000170 3.6e-21 105.1 164 36.6
BolC9t58562H Brassica oleracea HOM05D000286 ORTHO05D000170 3.6e-21 105.1 164 37.2
Thhalv10014061m.g Eutrema salsugineum HOM05D000286 ORTHO05D000170 3.6e-21 105.1 164 37.2
Cpa.g.sc53.81 Carica papaya HOM05D000286 ORTHO05D000170 4.8e-21 104.8 163 37.4
AT5G19290 Arabidopsis thaliana HOM05D000286 ORTHO05D000170 6.2e-21 104.4 164 37.2
BcaC04g18582 Brassica carinata HOM05D000286 ORTHO05D000170 6.2e-21 104.4 166 36.7
A10p20390 Brassica napus HOM05D000286 ORTHO05D000170 6.2e-21 104.4 166 36.7
C09p56990 Brassica napus HOM05D000286 ORTHO05D000170 6.2e-21 104.4 166 36.7
BraA10t44109Z Brassica rapa HOM05D000286 ORTHO05D000170 6.2e-21 104.4 166 36.7
Hma1.2p1_0301F.1_g118510 Hydrangea macrophylla HOM05D000286 ORTHO05D000170 6.2e-21 104.4 167 38.3
MD07G1174800 Malus domestica HOM05D000286 ORTHO05D000170 6.2e-21 104.4 165 37.6
Sp6g25130 Schrenkiella parvula HOM05D000286 ORTHO05D000170 6.2e-21 104.4 164 36.6
BcaB08g36588 Brassica carinata HOM05D000286 ORTHO05D000170 8.1e-21 104.0 166 36.1
Ciclev10033579m.g Citrus clementina HOM05D000286 ORTHO05D000170 8.1e-21 104.0 163 38.0
Eucgr.G02828 Eucalyptus grandis HOM05D000286 ORTHO05D000170 8.1e-21 104.0 164 37.8
Lalb_Chr06g0162291 Lupinus albus HOM05D000286 ORTHO05D000170 8.1e-21 104.0 175 35.4
TWI38G1906 Tripterygium wilfordii HOM05D000286 ORTHO05D000170 1.1e-20 103.6 148 41.2
Cc09_g02150 Coffea canephora HOM05D000286 ORTHO05D000170 1.8e-20 102.8 166 36.7
Lj5g0003715 Lotus japonicus HOM05D000286 ORTHO05D000170 1.8e-20 102.8 164 36.0
DCAR_014342 Daucus carota HOM05D000286 ORTHO05D000170 2.4e-20 102.4 166 34.9
THA.LOC104802414 Tarenaya hassleriana HOM05D000286 ORTHO05D000170 2.4e-20 102.4 151 40.4
Lsat_1_v5_gn_9_69240 Lactuca sativa HOM05D000286 ORTHO05D000170 3.1e-20 102.1 164 38.4
Aqoxy2G01631 Aquilegia oxysepala HOM05D000286 ORTHO05D000170 5.3e-20 101.3 166 39.2
CARHR193680 Cardamine hirsuta HOM05D000286 ORTHO05D000170 6.9e-20 100.9 164 36.6
Gohir.D04G003532 Gossypium hirsutum HOM05D000286 ORTHO05D000170 9.0e-20 100.5 147 40.8
Atru.chr12.750 Acer truncatum HOM05D000286 ORTHO05D000170 1.5e-19 99.8 164 37.2
Atru.chr12.775 Acer truncatum HOM05D000286 ORTHO05D000170 1.5e-19 99.8 164 37.2
Aa31LG11G10400 Aethionema arabicum HOM05D000286 ORTHO05D000170 1.5e-19 99.8 166 35.5
Sed0000059 Sechium edule HOM05D000286 ORTHO05D000170 1.5e-19 99.8 164 36.0
Hma1.2p1_0063F.1_g034485 Hydrangea macrophylla HOM05D000286 ORTHO05D000170 2.6e-19 99.0 167 37.1
PGR142G1331 Punica granatum HOM05D000286 ORTHO05D000170 2.6e-19 99.0 163 36.2
Psat0s2339g0120 Pisum sativum HOM05D000286 ORTHO05D000170 3.4e-19 98.6 151 37.1
Psat6g183560 Pisum sativum HOM05D000286 ORTHO05D000170 3.4e-19 98.6 151 37.1
Rhsim09G0152000 Rhododendron simsii HOM05D000286 ORTHO05D000170 3.4e-19 98.6 165 36.4
Sabra10G0171900 Salix brachista HOM05D000286 ORTHO05D000170 4.5e-19 98.2 166 37.3
Nitab4.5_0010206g0010 Nicotiana tabacum HOM05D000286 ORTHO05D000170 5.8e-19 97.8 169 33.7
AUR62032292 Chenopodium quinoa HOM05D000286 ORTHO05D000170 7.6e-19 97.4 142 38.7
Potri.010G222300 Populus trichocarpa HOM05D000286 ORTHO05D000170 7.6e-19 97.4 166 36.7
THA.LOC104809881 Tarenaya hassleriana HOM05D000286 ORTHO05D000170 9.9e-19 97.1 164 35.4
Manes.10G045800 Manihot esculenta HOM05D000286 ORTHO05D000170 1.3e-18 96.7 166 36.7
Nitab4.5_0000575g0150 Nicotiana tabacum HOM05D000286 ORTHO05D000170 1.3e-18 96.7 169 33.1
CsaV3_5G036310 Cucumis sativus L. HOM05D000286 ORTHO05D000170 1.7e-18 96.3 169 34.9
ClCG05G021000 Citrullus lanatus HOM05D000286 ORTHO05D000170 2.2e-18 95.9 169 34.9
Peaxi162Scf00072g00628 Petunia axillaris HOM05D000286 ORTHO05D000170 2.9e-18 95.5 172 33.1
ECA232G3896 Erigeron canadensis HOM05D000286 ORTHO05D000170 3.8e-18 95.1 180 34.4
Sopen05g034410 Solanum pennellii HOM05D000286 ORTHO05D000170 6.4e-18 94.4 165 34.5
CAN.G694.77 Capsicum annuum HOM05D000286 ORTHO05D000170 8.4e-18 94.0 168 32.7
MELO3C012430.2 Cucumis melo HOM05D000286 ORTHO05D000170 8.4e-18 94.0 169 34.9
Solyc05g056000.3 Solanum lycopersicum HOM05D000286 ORTHO05D000170 8.4e-18 94.0 165 34.5
Cc09_g02130 Coffea canephora HOM05D000286 ORTHO05D000170 1.4e-17 93.2 149 36.2
Gorai.012G004700 Gossypium raimondii HOM05D000286 ORTHO05D000170 1.4e-17 93.2 166 36.1
PGSC0003DMG400023465 Solanum tuberosum HOM05D000286 ORTHO05D000170 1.4e-17 93.2 165 33.9
Gohir.A05G412500 Gossypium hirsutum HOM05D000286 ORTHO05D000170 1.9e-17 92.8 166 36.1
AUR62011980 Chenopodium quinoa HOM05D000286 ORTHO05D000170 2.4e-17 92.4 157 35.7
Nitab4.5_0000476g0130 Nicotiana tabacum HOM05D000286 ORTHO05D000170 2.4e-17 92.4 169 33.1
Ah.11g050280 Amaranthus hybridus HOM05D000286 ORTHO05D000170 3.2e-17 92.0 167 34.1
Peaxi162Scf00156g01211 Petunia axillaris HOM05D000286 ORTHO05D000170 3.2e-17 92.0 169 32.0
COL.COLO4_23664 Corchorus olitorius HOM05D000286 ORTHO05D000170 4.2e-17 91.7 166 34.9
Potri.008G040000 Populus trichocarpa HOM05D000286 ORTHO05D000170 7.1e-17 90.9 166 34.9
Thecc.10G073400 Theobroma cacao HOM05D000286 ORTHO05D000170 9.3e-17 90.5 166 35.5
CDE10G0787 Ceratophyllum demersum HOM05D000286 ORTHO05D000170 1.2e-16 90.1 164 33.5
Duzib114G0854 Durio zibethinus HOM05D000286 ORTHO05D000170 1.2e-16 90.1 166 34.3
Sp6g29060 Schrenkiella parvula HOM05D000286 ORTHO05D000170 1.2e-16 90.1 164 34.1
CDE10G0309 Ceratophyllum demersum HOM05D000286 ORTHO05D000170 1.6e-16 89.7 177 32.8
Duzib106G0352 Durio zibethinus HOM05D000286 ORTHO05D000170 1.6e-16 89.7 166 34.9
Oeu007389.1 Olea europaea HOM05D000286 ORTHO05D000170 1.6e-16 89.7 168 33.3
MSTRG.27455 Avicennia marina HOM05D000286 ORTHO05D000170 2.1e-16 89.4 168 32.7
A02p02820 Brassica napus HOM05D007562 ORTHO05D009721 2.1e-16 89.4 163 33.7
Thhalv10014122m.g Eutrema salsugineum HOM05D000286 ORTHO05D000170 2.1e-16 89.4 165 33.3
PSO384G3038 Papaver somniferum HOM05D000286 ORTHO05D000170 2.1e-16 89.4 160 36.9
SalBow4G1152 Salvia bowleyana HOM05D000286 ORTHO05D000170 2.1e-16 89.4 168 32.7
SGA_v2.0_scaffold62G21428 Striga asiatica HOM05D000286 ORTHO05D000170 2.1e-16 89.4 168 32.1
CARHR198330 Cardamine hirsuta HOM05D000286 ORTHO05D000170 2.7e-16 89.0 165 33.3
AT5G14980 Arabidopsis thaliana HOM05D000286 ORTHO05D000170 3.5e-16 88.6 162 33.3
BraA02t05255Z Brassica rapa HOM05D007562 ORTHO05D009721 3.5e-16 88.6 165 33.3
AL6G25780 Arabidopsis lyrata HOM05D000286 ORTHO05D000170 4.6e-16 88.2 163 33.1
BcaC03g13439 Brassica carinata HOM05D000286 ORTHO05D000170 6.0e-16 87.8 161 33.5
C02p07440 Brassica napus HOM05D007562 ORTHO05D009721 6.0e-16 87.8 161 33.5
BolC2t06675H Brassica oleracea HOM05D000286 ORTHO05D009721 6.0e-16 87.8 161 33.5
Migut.F02004 Erythranthe guttata HOM05D000286 ORTHO05D000170 6.0e-16 87.8 168 31.5
MBI10_g13400_MAGBIO Magnolia biondii HOM05D000286 ORTHO05D000170 6.0e-16 87.8 168 33.9
Aa31LG11G14530 Aethionema arabicum HOM05D002926 ORTHO05D003338 3.9e-15 85.1 150 34.7
Hund12045 Selenicereus undatus HOM05D000286 ORTHO05D000170 3.9e-15 85.1 171 31.0
EL10Ac5g10507 Beta vulgaris HOM05D000286 ORTHO05D000170 6.7e-15 84.3 173 30.1
ATR0115G010 Amborella trichopoda HOM05D000286 ORTHO05D000170 8.7e-15 84.0 163 31.3
Sc09g0006410 Simmondsia chinensis HOM05D000286 ORTHO05D000170 8.7e-15 84.0 172 34.3
Carub.0006s1314 Capsella rubella HOM05D000286 ORTHO05D000170 1.5e-14 83.2 162 30.9
SHI21259 Sapria himalayana HOM05D000286 ORTHO05D000170 1.9e-14 82.8 164 34.1
THA.LOC104827298 Tarenaya hassleriana HOM05D000286 ORTHO05D000170 3.7e-13 78.6 149 33.6
Zm00001eb130730 Zea mays HOM05D000286 ORTHO05D000170 3.7e-13 78.6 161 30.4
TPR.G1915 Trifolium pratense HOM05D000286 ORTHO05D000170 2.4e-12 75.9 56 60.7
Nitab4.5_0003663g0040 Nicotiana tabacum HOM05D000286 ORTHO05D000170 3.1e-12 75.5 169 29.6
RcHm_v2.0_Chr1g0363421 Rosa chinensis HOM05D000286 ORTHO05D000170 1.2e-11 73.6 105 38.1
Psat0s2339g0040 Pisum sativum HOM05D000286 ORTHO05D000170 2.0e-11 72.8 123 38.2
Os01g0317800 Oryza sativa ssp. japonica HOM05D000286 ORTHO05D000170 4.5e-11 71.6 161 30.4
Aqoxy1G01239 Aquilegia oxysepala HOM05D000286 ORTHO05D000170 5.8e-11 71.2 151 32.5
FAN01G0809 Fragaria x ananassa HOM05D000286 ORTHO05D000170 7.6e-11 70.9 108 38.9
CSS0024640 Camellia sinensis var. sinensis HOM05D000286 ORTHO05D000170 3.8e-10 68.6 44 72.7
AagrBONN_evm.TU.Sc2ySwM_117.1645 Anthoceros agrestis HOM05D000286 ORTHO05D000170 6.4e-10 67.8 137 34.3
PSO339G2234 Papaver somniferum HOM05D000286 ORTHO05D000170 6.4e-10 67.8 55 58.2
Peaxi162Scf01527g00001 Petunia axillaris HOM05D000286 ORTHO05D000170 1.1e-09 67.0 56 51.8
Peaxi162Scf00384g00124 Petunia axillaris HOM05D000286 ORTHO05D000170 1.4e-09 66.6 103 35.0
Pp3c1_38030 Physcomitrium patens HOM05D000286 ORTHO05D000170 1.2e-08 63.5 141 30.5
Hund21397 Selenicereus undatus HOM05D000286 ORTHO05D000170 1.2e-08 63.5 144 28.5
ATR0048G018 Amborella trichopoda HOM05D000286 ORTHO05D000170 3.5e-08 62.0 42 71.4
Pp3c2_4420 Physcomitrium patens HOM05D000286 ORTHO05D000170 3.9e-07 58.5 135 28.1
SMO365G0044 Selaginella moellendorffii HOM05D000286 ORTHO05D000170 1.1e-06 57.0 143 30.8
Rhsim13G0121600 Rhododendron simsii HOM05D000286 ORTHO05D000170 3.3e-06 55.5 145 27.6
CSS0017556 Camellia sinensis var. sinensis HOM05D000286 ORTHO05D000170 5.6e-06 54.7 147 27.2
Rhsim02G0161500 Rhododendron simsii HOM05D000286 ORTHO05D000170 5.6e-06 54.7 138 28.3
TAR629G1333 Trochodendron aralioides HOM05D000286 ORTHO05D000170 7.4e-06 54.3 42 50.0


User provided reference genes

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