Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 0.0e+00 1218.0 629 100.0
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 2.5e-238 828.9 630 70.6
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 8.2e-229 797.3 631 67.8
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.0e-226 790.4 639 67.8
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.2e-226 789.3 630 67.3
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 8.5e-226 787.3 627 67.5
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.9e-225 786.2 630 67.1
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 7.9e-224 780.8 631 66.4
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.5e-222 776.5 641 66.6
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 3.3e-222 775.4 629 66.9
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 4.4e-222 775.0 680 62.4
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 9.7e-222 773.9 620 66.5
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 1.1e-220 770.4 632 65.7
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 9.1e-220 767.3 626 65.8
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 4.5e-219 765.0 619 66.2
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 7.7e-219 764.2 638 65.7
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 8.5e-218 760.8 598 68.1
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 2.5e-217 759.2 596 68.1
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 3.6e-216 755.4 634 64.2
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.0e-215 753.8 632 65.3
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.3e-215 752.7 626 64.9
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 1.5e-214 750.0 632 64.9
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 5.7e-214 748.0 625 64.3
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 9.7e-214 747.3 632 64.7
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 2.8e-213 745.7 627 63.8
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 2.7e-211 739.2 623 64.2
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 3.5e-211 738.8 603 64.8
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 5.0e-210 734.9 631 63.2
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.2e-208 730.3 667 62.7
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 3.4e-206 722.2 608 63.0
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 7.5e-206 721.1 588 64.6
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 1.7e-205 719.9 624 62.0
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.8e-205 719.2 639 61.2
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 3.7e-205 718.8 597 65.0
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 1.8e-204 716.5 616 63.0
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 3.1e-204 715.7 623 62.8
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 2.7e-203 712.6 619 63.0
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 2.2e-202 709.5 594 63.1
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 2.9e-202 709.1 634 60.3
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 3.8e-202 708.8 630 61.3
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 5.0e-202 708.4 608 61.7
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 8.5e-202 707.6 632 63.3
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 1.9e-201 706.4 657 59.7
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.9e-201 706.4 470 81.1
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 3.2e-201 705.7 623 61.2
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 8.0e-200 701.0 601 61.7
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.7e-197 693.3 636 61.3
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 8.3e-197 691.0 614 62.1
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 2.0e-195 686.4 637 59.7
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 2.0e-195 686.4 602 61.5
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 5.9e-195 684.9 590 62.0
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 2.3e-194 682.9 614 60.9
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 5.0e-194 681.8 609 60.9
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 6.6e-194 681.4 643 57.7
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 5.6e-193 678.3 633 59.7
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 2.8e-192 676.0 589 62.5
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 3.6e-192 675.6 606 59.9
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 3.0e-191 672.5 626 58.6
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 8.9e-191 671.0 634 59.0
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.5e-190 670.2 604 61.4
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 2.6e-190 669.5 638 59.1
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 4.4e-190 668.7 631 58.2
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 4.4e-190 668.7 613 60.4
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 2.2e-189 666.4 598 59.9
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 2.9e-189 666.0 620 59.2
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 2.9e-189 666.0 615 59.8
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 2.9e-189 666.0 604 61.1
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-188 664.1 607 60.6
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 5.4e-188 661.8 625 57.4
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 7.0e-188 661.4 617 59.3
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 7.0e-188 661.4 606 59.1
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 2.7e-187 659.4 639 58.1
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 7.8e-187 657.9 612 59.5
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.0e-186 657.5 645 57.4
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 3.0e-186 656.0 601 59.6
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 3.0e-186 656.0 590 60.5
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 5.0e-186 655.2 625 58.7
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 5.0e-186 655.2 625 58.7
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 2.5e-185 652.9 597 59.5
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 7.3e-185 651.4 623 58.3
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 9.5e-185 651.0 615 58.5
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 2.1e-184 649.8 614 58.6
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 2.1e-184 649.8 616 58.3
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 4.7e-184 648.7 612 58.8
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 4.7e-184 648.7 597 59.0
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 1.3e-181 640.6 592 58.8
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 2.2e-181 639.8 616 57.6
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 8.3e-181 637.9 589 59.3
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 1.6e-179 633.6 637 56.4
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 2.7e-179 632.9 589 58.6
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 3.5e-179 632.5 595 58.2
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.0e-178 629.4 636 58.5
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 2.1e-176 623.2 638 54.9
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 4.1e-172 609.0 626 54.6
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 5.4e-172 608.6 630 57.1
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 7.1e-172 608.2 620 55.6
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 2.7e-171 606.3 588 57.5
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 7.8e-171 604.7 630 56.0
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 2.5e-169 599.7 620 54.2
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 3.3e-169 599.4 621 54.4
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 5.2e-167 592.0 625 52.5
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.0e-162 577.8 596 54.5
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-159 567.8 602 54.8
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 8.9e-159 564.7 518 59.8
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 2.0e-158 563.5 513 60.8
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 2.7e-155 553.1 601 53.9
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 6.0e-155 552.0 591 53.8
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 1.8e-151 540.4 631 51.8
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.0e-138 498.0 470 57.9
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 8.4e-133 478.4 595 47.7
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.4e-127 461.1 600 48.3
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 7.2e-124 448.7 655 43.1
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 6.3e-120 435.6 634 42.6
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 1.2e-102 378.3 391 55.5
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 9.4e-100 368.6 509 47.2
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 7.7e-94 349.0 368 54.9
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 2.9e-93 347.1 544 41.7
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 2.6e-89 334.0 264 67.4
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.3e-77 295.0 287 62.7
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 4.3e-76 290.0 363 46.8
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.3e-74 284.3 361 47.6
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.6e-73 280.8 311 52.7
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 3.5e-70 270.4 367 46.9
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.4e-63 248.4 251 54.2
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.4e-63 248.4 228 59.2
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 1.6e-62 245.0 315 42.9
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 3.3e-60 237.3 293 45.1
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 4.3e-60 236.9 212 59.0
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 3.2e-55 220.7 206 55.8
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 3.3e-52 210.7 119 86.6
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 2.7e-46 191.0 197 50.8
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 3.5e-46 190.7 120 75.8
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 1.1e-44 185.7 228 43.4
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.5e-44 185.3 155 64.5
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 4.4e-41 173.7 185 51.9
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.2e-38 165.6 306 34.6
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 3.5e-38 164.1 156 57.7
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 3.0e-37 161.0 165 55.2
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.1e-36 159.1 120 67.5
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.9e-36 158.3 187 52.4
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.9e-36 158.3 120 66.7
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 1.6e-35 155.2 131 67.2
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 1.6e-35 155.2 100 74.0
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.4e-31 141.4 317 31.2
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 6.0e-30 136.7 113 68.1
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 8.1e-27 126.3 126 61.9
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 3.1e-26 124.4 87 72.4
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 6.9e-26 123.2 87 72.4
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 9.0e-26 122.9 212 38.2
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 7.6e-25 119.8 65 83.1
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 2.4e-23 114.8 171 42.1
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 1.3e-21 109.0 79 74.7
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 1.8e-21 108.6 178 34.8
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 5.1e-21 107.1 74 74.3
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 1.5e-20 105.5 113 51.3
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.9e-20 105.1 70 72.9
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 2.0e-17 95.1 78 66.7
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 3.8e-16 90.9 69 68.1
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 3.0e-13 81.3 163 34.4
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 1.5e-12 79.0 95 52.6
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 1.3e-11 75.9 49 75.5
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 2.2e-08 65.1 73 49.3
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 1.4e-07 62.4 49 61.2
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 1.4e-07 62.4 123 30.1
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 7.2e-07 60.1 48 58.3


User provided reference genes

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