Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 6.0e-144 514.6 354 100.0
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 1.5e-142 510.0 354 99.4
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 1.8e-119 433.3 354 75.4
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 9.6e-118 427.6 357 80.4
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 7.1e-113 411.4 349 73.4
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 9.3e-113 411.0 347 82.4
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 1.8e-111 406.8 349 70.2
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 9.6e-110 401.0 347 83.3
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 2.8e-109 399.4 349 59.9
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 2.4e-108 396.4 349 81.7
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 2.4e-108 396.4 348 82.2
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 1.5e-107 393.7 354 71.5
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 1.7e-106 390.2 354 70.3
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 4.9e-106 388.7 350 78.9
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 4.9e-106 388.7 350 78.9
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 6.5e-106 388.3 350 79.1
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 1.2e-104 384.0 332 84.3
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.6e-104 383.6 350 77.4
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 4.6e-104 382.1 347 80.4
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 2.3e-103 379.8 354 69.8
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 1.9e-102 376.7 345 80.6
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 1.3e-101 374.0 354 69.5
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 2.2e-101 373.2 350 77.1
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 2.8e-101 372.9 341 80.6
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 4.8e-101 372.1 356 76.4
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 1.4e-100 370.5 346 80.1
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 9.0e-100 367.9 322 78.0
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 2.0e-99 366.7 378 65.3
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 5.9e-99 365.2 346 78.0
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 1.1e-97 360.9 349 75.6
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 1.4e-97 360.5 355 65.4
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 2.1e-96 356.7 352 77.0
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 1.4e-95 354.0 341 78.0
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 3.9e-95 352.4 331 58.6
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 8.8e-95 351.3 352 75.9
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 1.1e-94 350.9 351 73.2
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 1.9e-94 350.1 357 73.4
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 2.2e-93 346.7 354 66.1
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 2.8e-93 346.3 353 67.1
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 6.9e-92 341.7 377 72.1
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 9.1e-92 341.3 352 71.9
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 5.9e-91 338.6 374 69.8
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 5.0e-90 335.5 348 74.1
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 1.9e-89 333.6 351 70.9
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 1.2e-88 330.9 347 72.6
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 1.0e-87 327.8 346 63.0
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 3.9e-87 325.9 354 70.3
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 2.0e-86 323.6 354 70.9
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 2.8e-85 319.7 354 69.2
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 4.8e-85 318.9 354 62.4
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 3.1e-84 316.2 349 67.3
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 4.1e-84 315.8 359 70.5
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 5.3e-84 315.5 354 69.2
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 1.5e-83 313.9 344 66.9
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 2.6e-83 313.2 351 72.1
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 3.4e-83 312.8 381 48.0
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 3.4e-83 312.8 381 48.0
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 4.5e-83 312.4 354 67.8
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 6.5e-82 308.5 354 58.8
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 2.5e-81 306.6 349 64.8
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 5.5e-81 305.4 344 72.7
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 7.2e-81 305.1 345 71.3
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 9.4e-81 304.7 351 71.5
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 1.2e-80 304.3 375 46.4
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 2.7e-80 303.1 344 72.1
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 1.4e-79 300.8 344 72.4
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 3.9e-79 299.3 331 63.4
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 1.5e-78 297.4 289 82.7
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 2.6e-78 296.6 355 69.9
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 5.7e-78 295.4 360 68.3
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 9.7e-78 294.7 348 69.8
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 4.8e-77 292.4 277 73.6
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 1.8e-76 290.4 348 72.1
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 1.8e-76 290.4 348 72.1
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 1.8e-76 290.4 323 67.8
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 1.8e-76 290.4 356 68.0
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 3.1e-76 289.7 329 49.8
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 5.9e-75 285.4 292 79.1
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 7.7e-75 285.0 342 71.1
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 2.2e-74 283.5 321 70.1
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 1.8e-71 273.9 277 70.8
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 7.0e-68 261.9 289 73.7
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 2.0e-67 260.4 292 69.2
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 2.2e-66 256.9 340 43.5
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 4.7e-64 249.2 286 74.1
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 1.0e-63 248.1 344 63.1
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 1.4e-63 247.7 353 49.3
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 3.7e-61 239.6 278 64.7
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 9.1e-60 235.0 405 42.0
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 3.5e-59 233.0 296 69.6
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 1.0e-55 221.5 290 70.3
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 1.8e-52 210.7 277 70.0
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 3.1e-52 209.9 277 69.7
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 1.6e-51 207.6 298 68.5
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 5.0e-50 202.6 339 53.4
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 5.6e-49 199.1 394 53.8
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 1.2e-48 198.0 136 68.4
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 2.8e-48 196.8 148 63.5
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 1.8e-47 194.1 410 33.7
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 1.4e-44 184.5 351 48.1
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 2.0e-43 180.6 300 64.7
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 5.0e-42 176.0 260 70.4
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 2.5e-41 173.7 113 72.6
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 1.1e-39 168.3 348 51.4
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 7.5e-38 162.2 276 46.0
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 5.6e-33 146.0 107 71.0
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 5.6e-33 146.0 107 71.0
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 7.3e-33 145.6 293 37.2
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 1.1e-28 131.7 119 58.8
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 8.6e-26 122.1 86 70.9
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 4.7e-24 116.3 275 29.5
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 1.4e-23 114.8 124 50.0
AUR62015309 Chenopodium quinoa HOM05D007176 ORTHO05D009050 1.2e-22 111.7 225 32.4
HanXRQChr10g0281201 Helianthus annuus HOM05D005998 ORTHO05D007664 6.9e-07 59.3 94 39.4
Medtr1g054600 Medicago truncatula HOM05D002729 ORTHO05D003163 9.0e-07 58.9 38 68.4
BcaC06g33410 Brassica carinata HOM05D002762 ORTHO05D004643 1.2e-06 58.5 82 43.9
A03p49130 Brassica napus HOM05D002762 ORTHO05D004643 1.2e-06 58.5 82 43.9
C07p47170 Brassica napus HOM05D002762 ORTHO05D004643 1.2e-06 58.5 82 43.9
BolC7t45238H Brassica oleracea HOM05D002762 ORTHO05D004643 1.2e-06 58.5 82 43.9
BraA03t14008Z Brassica rapa HOM05D002762 ORTHO05D004643 1.2e-06 58.5 82 43.9
Nn4g26135 Nelumbo nucifera HOM05D002762 ORTHO05D004643 1.5e-06 58.2 117 35.0
ClCG06G005660 Citrullus lanatus HOM05D002762 ORTHO05D004643 2.6e-06 57.4 98 39.8
Sed0001779 Sechium edule HOM05D002762 ORTHO05D004643 2.6e-06 57.4 92 40.2
Cre14.g624000 Chlamydomonas reinhardtii HOM05D002762 ORTHO05D004643 3.4e-06 57.0 70 47.1
unitig_736.g22302 Utricularia gibba HOM05D000180 ORTHO05D009050 4.5e-06 56.6 46 58.7
Ciclev10004705m.g Citrus clementina HOM05D002762 ORTHO05D004643 7.6e-06 55.8 113 35.4
Manes.03G187500 Manihot esculenta HOM05D002762 ORTHO05D004643 7.6e-06 55.8 76 40.8


User provided reference genes

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