Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 4.3e-21 103.6 48 100.0
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 1.1e-11 72.4 38 84.2
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 4.0e-11 70.5 38 81.6
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 4.0e-11 70.5 38 81.6
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 4.0e-11 70.5 38 81.6
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 4.0e-11 70.5 38 81.6
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 6.9e-11 69.7 38 78.9
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 6.9e-11 69.7 38 81.6
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.5e-10 68.6 38 76.3
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 1.5e-10 68.6 38 76.3
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 1.5e-10 68.6 38 76.3
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.5e-10 68.6 38 84.2
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.5e-10 68.6 38 84.2
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 2.0e-10 68.2 38 76.3
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 2.0e-10 68.2 38 76.3
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 2.0e-10 68.2 38 73.7
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 2.0e-10 68.2 38 81.6
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 3.4e-10 67.4 38 71.1
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 3.4e-10 67.4 38 78.9
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 3.4e-10 67.4 38 78.9
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 3.4e-10 67.4 38 73.7
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 4.5e-10 67.0 38 78.9
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 4.5e-10 67.0 38 76.3
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 4.5e-10 67.0 38 76.3
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 4.5e-10 67.0 38 78.9
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 4.5e-10 67.0 38 76.3
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 4.5e-10 67.0 38 76.3
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 5.8e-10 66.6 38 76.3
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 7.6e-10 66.2 38 76.3
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 7.6e-10 66.2 38 76.3
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 7.6e-10 66.2 38 76.3
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 7.6e-10 66.2 38 78.9
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 1.0e-09 65.9 37 78.4
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.0e-09 65.9 38 76.3
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 1.3e-09 65.5 38 71.1
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 1.3e-09 65.5 38 76.3
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.9e-09 64.3 38 71.1
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 2.9e-09 64.3 38 73.7
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 2.9e-09 64.3 37 73.0
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 2.9e-09 64.3 37 73.0
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 3.8e-09 63.9 38 73.7
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 4.9e-09 63.5 38 71.1
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 4.9e-09 63.5 37 70.3
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 4.9e-09 63.5 37 73.0
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 6.5e-09 63.2 37 73.0
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 6.5e-09 63.2 37 73.0
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 6.5e-09 63.2 38 71.1
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 8.4e-09 62.8 38 71.1
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 1.1e-08 62.4 38 73.7
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.1e-08 62.4 38 73.7
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 1.1e-08 62.4 38 71.1
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 1.1e-08 62.4 38 68.4
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.1e-08 62.4 38 71.1
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 1.4e-08 62.0 38 73.7
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 1.4e-08 62.0 38 68.4
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 1.4e-08 62.0 38 71.1
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 1.9e-08 61.6 38 65.8
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 1.9e-08 61.6 38 65.8
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 2.5e-08 61.2 37 70.3
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 2.5e-08 61.2 38 68.4
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.5e-08 61.2 38 68.4
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 2.5e-08 61.2 38 68.4
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 2.5e-08 61.2 38 68.4
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 2.5e-08 61.2 38 68.4
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 2.5e-08 61.2 38 65.8
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 3.2e-08 60.8 38 65.8
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 3.2e-08 60.8 38 65.8
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 3.2e-08 60.8 38 60.5
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 3.2e-08 60.8 36 72.2
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 3.2e-08 60.8 38 71.1
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 3.2e-08 60.8 38 71.1
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 3.2e-08 60.8 38 71.1
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 4.2e-08 60.5 38 65.8
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 4.2e-08 60.5 38 65.8
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 7.1e-08 59.7 38 65.8
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 9.3e-08 59.3 38 65.8
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 9.3e-08 59.3 38 65.8
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 9.3e-08 59.3 38 65.8
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 9.3e-08 59.3 38 68.4
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 9.3e-08 59.3 38 63.2
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 9.3e-08 59.3 38 63.2
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 9.3e-08 59.3 38 63.2
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.2e-07 58.9 36 75.0
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 1.2e-07 58.9 38 65.8
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 1.2e-07 58.9 38 63.2
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 1.2e-07 58.9 37 64.9
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.6e-07 58.5 38 68.4
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 2.1e-07 58.2 37 70.3
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 2.1e-07 58.2 38 65.8
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 2.1e-07 58.2 37 67.6
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 2.7e-07 57.8 38 60.5
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 3.5e-07 57.4 36 66.7
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 3.5e-07 57.4 38 63.2
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 3.5e-07 57.4 38 60.5
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 3.5e-07 57.4 38 60.5
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 4.6e-07 57.0 38 60.5
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 4.6e-07 57.0 37 64.9
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 6.0e-07 56.6 37 64.9
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 6.0e-07 56.6 38 65.8
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 6.0e-07 56.6 36 69.4
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 7.9e-07 56.2 38 63.2
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 7.9e-07 56.2 38 57.9
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 7.9e-07 56.2 38 57.9
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 7.9e-07 56.2 38 57.9
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 7.9e-07 56.2 38 57.9
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 7.9e-07 56.2 36 61.1
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 7.9e-07 56.2 37 62.2
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 1.0e-06 55.8 36 58.3
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 1.8e-06 55.1 38 55.3
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 1.8e-06 55.1 38 55.3
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 1.8e-06 55.1 38 55.3
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 1.8e-06 55.1 38 55.3
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 1.8e-06 55.1 38 60.5
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 1.8e-06 55.1 38 60.5
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 2.3e-06 54.7 38 55.3
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 2.3e-06 54.7 36 61.1
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 2.3e-06 54.7 37 62.2
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 2.3e-06 54.7 37 59.5
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 3.0e-06 54.3 41 56.1
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 3.0e-06 54.3 38 57.9
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 3.9e-06 53.9 38 57.9
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 5.1e-06 53.5 36 58.3
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 6.7e-06 53.1 36 61.1


User provided reference genes

Program Settings