Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.0e-61 240.0 124 100.0
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.0e-21 107.1 73 79.5
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.9e-21 105.5 73 78.1
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.9e-20 102.8 93 66.7
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.9e-20 102.8 93 66.7
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.0e-18 97.1 88 68.2
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.4e-18 96.7 75 70.7
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.4e-18 96.7 75 70.7
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 3.0e-18 95.5 91 60.4
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 4.0e-18 95.1 86 66.3
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 6.8e-18 94.4 91 61.5
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 8.8e-18 94.0 73 71.2
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.2e-17 93.6 90 63.3
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 1.5e-17 93.2 92 57.6
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 1.5e-17 93.2 79 68.4
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 2.0e-17 92.8 71 70.4
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 2.0e-17 92.8 79 67.1
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.6e-17 92.4 85 64.7
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 3.4e-17 92.0 69 76.8
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 4.4e-17 91.7 80 66.2
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 5.7e-17 91.3 80 67.5
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 7.5e-17 90.9 83 62.7
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 7.5e-17 90.9 91 59.3
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 7.5e-17 90.9 69 75.4
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 9.8e-17 90.5 88 61.4
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 9.8e-17 90.5 80 66.2
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 9.8e-17 90.5 90 60.0
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 9.8e-17 90.5 80 66.2
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 1.3e-16 90.1 73 65.8
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 1.3e-16 90.1 66 74.2
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.7e-16 89.7 71 69.0
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.7e-16 89.7 99 59.6
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 1.7e-16 89.7 66 72.7
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.8e-16 89.0 81 64.2
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 2.8e-16 89.0 80 68.8
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 2.8e-16 89.0 83 63.9
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.7e-16 88.6 88 60.2
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 3.7e-16 88.6 81 67.9
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 3.7e-16 88.6 88 61.4
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 4.8e-16 88.2 81 66.7
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 4.8e-16 88.2 66 71.2
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 6.3e-16 87.8 83 61.4
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 6.3e-16 87.8 81 60.5
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 6.3e-16 87.8 67 73.1
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 8.3e-16 87.4 84 59.5
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.4e-15 86.7 80 63.8
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 1.4e-15 86.7 76 64.5
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.8e-15 86.3 81 65.4
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 2.4e-15 85.9 85 61.2
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.4e-15 85.9 83 59.0
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 2.4e-15 85.9 77 63.6
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 3.1e-15 85.5 70 70.0
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 3.1e-15 85.5 89 57.3
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 4.1e-15 85.1 75 66.7
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 4.1e-15 85.1 73 63.0
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 4.1e-15 85.1 74 64.9
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 7.0e-15 84.3 82 61.0
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 7.0e-15 84.3 73 65.8
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 7.0e-15 84.3 84 53.6
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 9.1e-15 84.0 82 62.2
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 9.1e-15 84.0 70 62.9
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 1.2e-14 83.6 88 58.0
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 1.6e-14 83.2 71 69.0
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 2.0e-14 82.8 71 64.8
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 2.7e-14 82.4 68 67.6
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 2.7e-14 82.4 75 65.3
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 2.7e-14 82.4 73 63.0
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 2.7e-14 82.4 66 65.2
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.5e-14 82.0 84 59.5
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.5e-14 82.0 71 63.4
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 3.5e-14 82.0 71 66.2
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 3.5e-14 82.0 74 62.2
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 4.5e-14 81.6 79 62.0
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 5.9e-14 81.3 74 62.2
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 7.7e-14 80.9 72 61.1
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 1.0e-13 80.5 87 55.2
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 1.0e-13 80.5 89 55.1
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.0e-13 80.5 86 55.8
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 1.7e-13 79.7 79 58.2
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.7e-13 79.7 100 53.0
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.7e-13 79.7 88 55.7
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.7e-13 79.7 71 64.8
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 2.9e-13 79.0 87 51.7
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 2.9e-13 79.0 72 61.1
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 2.9e-13 79.0 79 60.8
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 3.8e-13 78.6 89 56.2
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 5.0e-13 78.2 86 55.8
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 5.0e-13 78.2 86 55.8
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 5.0e-13 78.2 72 61.1
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 6.5e-13 77.8 85 52.9
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 1.1e-12 77.0 73 63.0
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 1.5e-12 76.6 86 53.5
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 1.5e-12 76.6 86 53.5
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 1.5e-12 76.6 86 53.5
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 1.5e-12 76.6 86 51.2
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 1.9e-12 76.3 76 60.5
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 1.9e-12 76.3 78 59.0
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.5e-12 75.9 80 55.0
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 2.5e-12 75.9 74 60.8
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 3.2e-12 75.5 72 56.9
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 3.2e-12 75.5 86 53.5
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 3.2e-12 75.5 86 53.5
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 3.2e-12 75.5 78 60.3
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 3.2e-12 75.5 63 73.0
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.2e-12 75.1 73 64.4
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.2e-12 75.1 78 61.5
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 4.2e-12 75.1 78 61.5
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.2e-12 74.3 64 68.8
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 9.4e-12 73.9 65 61.5
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 1.6e-11 73.2 82 53.7
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 1.6e-11 73.2 76 56.6
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 2.1e-11 72.8 62 64.5
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 2.1e-11 72.8 69 66.7
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 2.7e-11 72.4 69 66.7
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 2.7e-11 72.4 69 66.7
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 3.6e-11 72.0 72 54.2
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.6e-11 72.0 77 58.4
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 3.6e-11 72.0 76 61.8
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 3.6e-11 72.0 66 65.2
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.6e-11 72.0 71 57.7
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.7e-11 71.6 78 59.0
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 6.1e-11 71.2 66 65.2
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 6.1e-11 71.2 68 64.7
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 8.0e-11 70.9 66 59.1
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 1.0e-10 70.5 82 51.2
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 1.0e-10 70.5 76 55.3
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 1.4e-10 70.1 69 55.1
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 1.8e-10 69.7 82 47.6
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 2.3e-10 69.3 79 55.7
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 2.3e-10 69.3 77 57.1
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 4.0e-10 68.6 64 60.9
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 6.8e-10 67.8 53 75.5
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 6.8e-10 67.8 92 47.8
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 1.2e-09 67.0 61 67.2
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 1.2e-09 67.0 89 51.7
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 3.4e-09 65.5 70 60.0
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 3.4e-09 65.5 68 55.9
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 1.7e-08 63.2 69 49.3
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 2.2e-08 62.8 65 53.8
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.2e-08 62.8 78 55.1
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 4.9e-08 61.6 67 58.2
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 4.9e-08 61.6 75 52.0
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 6.3e-08 61.2 87 46.0
ATR0598G063 Amborella trichopoda HOM05D004722 ORTHO05D005453 1.1e-07 60.5 65 61.5
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.1e-07 60.5 77 49.4
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 1.8e-07 59.7 59 61.0
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.8e-07 59.7 72 51.4
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 3.1e-07 58.9 62 58.1
Nitab4.5_0002319g0020 Nicotiana tabacum HOM05D004722 ORTHO05D005453 3.1e-07 58.9 85 45.9
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 7.0e-07 57.8 67 52.2
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 9.2e-07 57.4 59 59.3
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 3.5e-06 55.5 61 52.5


User provided reference genes

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