Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 6.4e-118 427.6 237 100.0
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 5.0e-94 348.2 228 78.5
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 7.4e-90 334.3 229 77.7
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 5.3e-88 328.2 229 75.5
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.3e-86 323.6 229 76.0
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 2.5e-85 319.3 232 67.2
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 4.2e-85 318.5 230 73.9
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 5.5e-85 318.2 228 72.8
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 9.4e-85 317.4 232 74.6
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.1e-84 316.2 228 75.4
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.7e-84 315.8 232 74.1
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 4.7e-84 315.1 230 73.5
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.0e-83 313.9 235 74.0
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.3e-83 312.8 230 75.7
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.1e-82 310.5 237 70.9
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 2.0e-82 309.7 231 72.7
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 9.7e-82 307.4 261 62.8
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.3e-81 307.0 236 75.8
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.3e-81 307.0 232 68.1
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.3e-81 307.0 229 71.6
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 1.7e-81 306.6 226 72.1
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 2.8e-81 305.8 239 63.6
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 2.8e-81 305.8 236 63.6
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 6.3e-81 304.7 229 71.6
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 8.2e-81 304.3 229 71.6
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 1.1e-80 303.9 228 73.2
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 1.1e-80 303.9 226 71.2
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 2.4e-80 302.8 220 68.2
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 3.1e-80 302.4 232 70.7
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 5.3e-80 301.6 229 64.2
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 5.3e-80 301.6 231 67.5
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 5.3e-80 301.6 228 74.1
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 9.1e-80 300.8 231 71.9
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.2e-79 300.4 229 72.9
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 1.2e-79 300.4 231 74.5
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 2.0e-79 299.7 229 72.5
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 3.5e-79 298.9 231 66.7
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 4.5e-79 298.5 226 71.7
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 5.9e-79 298.1 234 64.5
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 5.9e-79 298.1 221 66.1
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 5.9e-79 298.1 222 66.2
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 7.7e-79 297.7 231 70.6
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.3e-78 297.0 232 73.7
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 5.0e-78 295.0 227 74.0
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 6.5e-78 294.7 245 61.6
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.1e-77 293.9 230 69.6
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 1.5e-77 293.5 217 73.7
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 1.9e-77 293.1 229 71.6
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 5.5e-77 291.6 228 69.7
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 5.5e-77 291.6 214 64.5
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 7.2e-77 291.2 229 70.3
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 9.4e-77 290.8 233 69.1
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 1.2e-76 290.4 227 68.3
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 2.1e-76 289.7 229 70.7
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.7e-76 289.3 221 68.3
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 2.7e-76 289.3 232 66.4
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 4.7e-76 288.5 224 62.9
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 4.7e-76 288.5 217 65.4
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 4.7e-76 288.5 228 68.4
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 6.1e-76 288.1 225 68.4
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 6.1e-76 288.1 221 62.0
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.4e-75 287.0 225 62.2
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.8e-75 286.6 225 61.8
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.3e-75 286.2 225 72.0
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 3.0e-75 285.8 225 62.2
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 3.0e-75 285.8 224 62.1
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 5.2e-75 285.0 227 64.3
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 5.2e-75 285.0 224 61.2
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 5.2e-75 285.0 229 67.2
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 6.7e-75 284.6 225 65.3
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.5e-74 283.5 224 61.6
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 3.3e-74 282.3 223 71.3
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 4.4e-74 282.0 251 66.5
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 1.3e-73 280.4 221 64.7
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 1.3e-73 280.4 221 64.7
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 1.3e-73 280.4 235 68.5
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 2.8e-73 279.3 233 60.1
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 2.8e-73 279.3 253 64.4
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 6.3e-73 278.1 259 61.8
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.4e-72 276.9 230 60.0
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.4e-72 276.9 234 70.5
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.8e-72 276.6 229 59.4
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 5.3e-72 275.0 230 66.5
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 7.0e-72 274.6 217 69.6
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 9.1e-72 274.2 210 64.3
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 9.1e-72 274.2 231 67.5
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 9.1e-72 274.2 219 61.2
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.2e-71 273.9 234 67.9
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 2.0e-71 273.1 177 72.3
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 5.9e-71 271.6 217 61.8
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.0e-70 270.8 224 67.4
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 1.0e-70 270.8 240 64.6
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 1.0e-70 270.8 234 59.4
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.2e-70 269.6 241 56.4
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 3.2e-69 265.8 164 73.8
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 4.2e-69 265.4 226 64.2
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 5.5e-69 265.0 217 68.2
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 5.5e-69 265.0 213 62.4
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 9.4e-69 264.2 231 62.8
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 9.4e-69 264.2 225 64.4
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 2.7e-68 262.7 266 56.4
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.7e-68 262.7 239 60.3
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 4.7e-68 261.9 231 65.8
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 4.7e-68 261.9 214 65.9
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 4.7e-68 261.9 223 68.2
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 4.7e-68 261.9 269 59.5
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 4.7e-68 261.9 221 62.0
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.0e-67 260.8 215 62.3
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.0e-67 260.8 230 60.9
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 6.8e-67 258.1 169 73.4
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 6.8e-67 258.1 227 59.5
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.8e-67 258.1 227 59.5
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.8e-67 258.1 227 59.5
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.8e-67 258.1 227 59.5
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 6.8e-67 258.1 233 63.5
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 8.8e-67 257.7 231 63.2
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 1.5e-66 256.9 230 60.4
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 2.0e-66 256.5 244 54.9
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 2.6e-66 256.1 203 64.5
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 9.7e-66 254.2 174 67.2
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 2.2e-65 253.1 222 62.2
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 8.3e-65 251.1 235 55.7
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 1.1e-64 250.8 221 67.4
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.8e-64 250.0 227 58.1
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 1.2e-63 247.3 274 50.7
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 2.7e-63 246.1 224 55.8
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.7e-62 243.4 197 70.6
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 5.0e-62 241.9 142 78.2
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 3.2e-61 239.2 246 52.8
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.7e-60 236.1 254 52.8
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 1.0e-59 234.2 220 56.8
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 1.4e-59 233.8 140 77.9
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 5.2e-59 231.9 143 77.6
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 5.2e-59 231.9 244 54.9
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 2.8e-57 226.1 146 74.7
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.8e-56 223.4 183 64.5
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 9.5e-53 211.1 242 50.4
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 4.7e-52 208.8 147 68.7
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 6.1e-52 208.4 137 72.3
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.3e-49 200.7 279 45.5
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 4.1e-48 195.7 130 73.8
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.5e-45 187.2 148 59.5
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.9e-45 186.8 140 65.0
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 6.1e-44 181.8 127 69.3
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 1.8e-43 180.3 123 68.3
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 3.4e-42 176.0 158 51.9
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 3.6e-36 156.0 98 72.4
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 2.9e-33 146.4 99 67.7
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.4e-33 145.2 227 43.2
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 1.4e-32 144.1 129 60.5
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 1.8e-27 127.1 97 70.1
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 1.4e-24 117.5 117 52.1
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 6.6e-22 108.6 188 36.2
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 4.7e-20 102.4 225 30.7
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 8.1e-20 101.7 101 68.3
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 1.7e-17 94.0 123 38.2
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 4.9e-17 92.4 79 54.4
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 4.6e-15 85.9 102 41.2
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 1.9e-13 80.5 83 69.9
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 7.3e-13 78.6 85 65.9
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 2.8e-12 76.6 128 32.0
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 6.2e-12 75.5 91 45.1
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 6.2e-12 75.5 136 27.9
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 8.1e-12 75.1 85 68.2
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 1.8e-11 73.9 95 58.9
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 4.9e-09 65.9 73 43.8
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 4.6e-07 59.3 56 46.4


User provided reference genes

Program Settings