Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.1e-127 459.9 222 100.0
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 4.3e-92 341.7 214 79.0
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.6e-81 306.6 198 76.3
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 1.5e-79 300.1 230 65.7
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.4e-74 282.7 199 68.3
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 1.2e-73 280.4 212 67.5
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 5.9e-73 278.1 228 61.8
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.2e-72 276.2 180 71.7
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 2.9e-72 275.8 227 63.0
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 2.9e-72 275.8 217 63.1
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 5.0e-72 275.0 206 66.5
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 6.5e-72 274.6 216 64.8
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 6.5e-72 274.6 206 65.5
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 8.5e-72 274.2 189 66.7
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 4.2e-71 271.9 224 62.9
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 4.2e-71 271.9 197 67.5
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 7.2e-71 271.2 216 64.4
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 6.1e-70 268.1 220 63.2
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 1.4e-69 266.9 188 69.1
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 6.8e-69 264.6 195 67.2
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 6.8e-69 264.6 230 58.3
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 1.5e-68 263.5 167 74.3
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 3.4e-68 262.3 152 77.6
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 5.7e-68 261.5 155 76.1
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 7.5e-68 261.2 197 65.5
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 7.5e-68 261.2 213 62.4
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 7.5e-68 261.2 156 75.0
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 1.3e-67 260.4 235 57.0
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 1.3e-67 260.4 192 67.2
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.7e-67 260.0 215 60.0
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 1.7e-67 260.0 212 61.3
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 1.7e-67 260.0 198 67.2
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.7e-67 260.0 206 64.1
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.2e-67 259.6 152 76.3
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 3.7e-67 258.8 199 64.3
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.8e-67 258.5 215 60.0
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.8e-67 258.5 215 59.5
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 8.3e-67 257.7 155 74.8
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.8e-66 256.5 213 61.0
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 5.4e-66 255.0 189 65.1
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 7.0e-66 254.6 166 72.3
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 7.0e-66 254.6 155 74.2
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 9.1e-66 254.2 187 66.8
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 9.1e-66 254.2 198 64.6
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 1.2e-65 253.8 205 63.4
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 2.7e-65 252.7 208 58.2
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.5e-65 252.3 219 58.9
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.5e-65 252.3 145 78.6
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.5e-65 252.3 224 56.2
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 5.9e-65 251.5 199 63.8
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 7.7e-65 251.1 183 68.9
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 7.7e-65 251.1 152 77.0
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 1.3e-64 250.4 212 57.5
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 2.2e-64 249.6 155 72.3
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 2.2e-64 249.6 155 72.3
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 2.9e-64 249.2 152 75.7
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 3.8e-64 248.8 179 68.7
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.1e-63 247.3 184 60.9
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.5e-63 246.9 212 59.4
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 3.2e-63 245.7 222 57.7
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 2.1e-62 243.0 153 71.2
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 2.7e-62 242.7 168 67.9
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 3.6e-62 242.3 161 71.4
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 6.1e-62 241.5 161 68.9
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 1.0e-61 240.7 147 73.5
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 1.4e-61 240.4 190 62.6
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.4e-61 240.4 189 62.4
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.3e-61 239.6 167 67.7
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 3.0e-61 239.2 186 60.8
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 3.0e-61 239.2 161 67.1
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 4.0e-61 238.8 210 56.7
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 4.0e-61 238.8 249 51.4
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.2e-60 237.3 168 66.7
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 2.0e-60 236.5 203 61.1
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.6e-60 236.1 161 67.1
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 2.6e-60 236.1 166 67.5
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 4.4e-60 235.3 159 69.2
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 5.7e-60 235.0 211 57.3
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 7.5e-60 234.6 167 66.5
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 4.9e-59 231.9 167 67.1
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 4.9e-59 231.9 148 70.9
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 8.3e-59 231.1 198 59.1
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 3.1e-58 229.2 142 73.2
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 5.4e-58 228.4 251 50.2
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.6e-57 226.9 185 56.2
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 2.3e-56 223.0 186 55.9
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 2.9e-56 222.6 143 68.5
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 6.6e-56 221.5 143 69.2
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.9e-55 219.9 162 63.6
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 1.9e-55 219.9 174 60.3
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.3e-55 218.8 174 59.8
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.3e-55 218.8 174 59.8
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 4.3e-55 218.8 185 56.2
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 7.3e-55 218.0 130 75.4
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.6e-54 216.9 179 57.0
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.8e-53 213.4 214 51.9
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.3e-53 213.0 189 55.0
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 3.0e-53 212.6 190 55.3
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.6e-52 209.5 192 54.7
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 3.4e-52 209.1 116 76.7
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 4.4e-52 208.8 145 66.2
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 5.7e-52 208.4 223 51.1
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 7.5e-52 208.0 143 69.2
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 9.8e-52 207.6 190 54.2
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 2.2e-51 206.5 154 59.7
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 2.9e-51 206.1 168 60.7
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 8.3e-51 204.5 137 67.2
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 4.6e-49 198.7 156 57.7
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 1.0e-48 197.6 157 58.0
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 1.3e-48 197.2 240 48.8
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 2.3e-48 196.4 162 55.6
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 5.6e-47 191.8 138 63.8
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 3.6e-46 189.1 176 56.2
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 4.7e-46 188.7 156 53.2
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 8.0e-46 188.0 156 51.3
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.0e-45 187.6 157 52.9
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 6.8e-45 184.9 179 48.6
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 8.9e-45 184.5 220 45.0
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 1.2e-44 184.1 211 52.1
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 1.5e-44 183.7 144 56.9
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 3.4e-44 182.6 106 76.4
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.9e-43 179.5 145 52.4
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 8.3e-43 177.9 145 52.4
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.4e-42 177.2 182 45.1
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 1.9e-42 176.8 143 54.5
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 9.2e-42 174.5 145 50.3
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 9.2e-42 174.5 145 50.3
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 2.7e-41 172.9 145 50.3
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 2.7e-41 172.9 145 50.3
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 2.7e-41 172.9 146 53.4
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 3.5e-41 172.6 145 50.3
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 3.5e-41 172.6 145 50.3
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 6.0e-41 171.8 136 57.4
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.0e-40 171.0 145 49.7
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 1.0e-40 171.0 96 79.2
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 1.0e-40 171.0 210 47.1
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.1e-39 167.5 102 72.5
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.9e-39 166.8 108 67.6
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 7.3e-39 164.9 143 48.3
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.2e-38 164.1 102 70.6
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 2.0e-36 156.8 121 52.9
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 2.6e-36 156.4 146 56.2
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 3.2e-34 149.4 95 64.2
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 7.8e-33 144.8 119 49.6
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 1.5e-31 140.6 131 53.4
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 2.5e-31 139.8 177 47.5
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 4.3e-31 139.0 148 43.2
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 9.5e-31 137.9 135 53.3
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 3.1e-29 132.9 130 52.3
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 1.2e-28 131.0 74 77.0
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 4.4e-28 129.0 148 50.0
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 2.2e-27 126.7 64 84.4
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 2.9e-27 126.3 146 39.7
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 7.1e-26 121.7 193 38.9
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 6.0e-25 118.6 64 81.2
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 1.5e-23 114.0 112 46.4
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 1.2e-22 110.9 136 39.7
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 1.6e-22 110.5 111 50.5
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 2.4e-21 106.7 110 50.9
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 1.5e-15 87.4 50 76.0
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 2.1e-14 83.6 56 71.4
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 1.8e-13 80.5 45 75.6
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 4.5e-12 75.9 85 45.9
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 9.9e-12 74.7 59 61.0
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 8.4e-11 71.6 53 54.7
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 2.4e-10 70.1 63 47.6
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 3.2e-10 69.7 51 54.9
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 5.4e-10 68.9 78 42.3
Pp3c15_19030 Physcomitrium patens HOM05D060542 ORTHO05D043949 1.1e-07 61.2 155 29.7
BolC8t52839H Brassica oleracea HOM05D004068 ORTHO05D004700 1.5e-07 60.8 75 44.0


User provided reference genes

Program Settings