Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0396 Trochodendron aralioides HOM05D002801 ORTHO05D003002 5.4e-136 487.6 245 100.0
TAR636G1313 Trochodendron aralioides HOM05D002801 ORTHO05D003002 2.0e-114 416.0 247 86.2
GSVIVG01025725001 Vitis vinifera HOM05D002801 ORTHO05D003002 1.6e-103 379.8 245 78.4
Nn2g11575 Nelumbo nucifera HOM05D002801 ORTHO05D003002 2.3e-102 375.9 244 77.5
Dinv35783 Davidia involucrata HOM05D002801 ORTHO05D003002 1.1e-96 357.1 245 75.1
Thecc.05G064900 Theobroma cacao HOM05D002801 ORTHO05D003002 2.1e-95 352.8 245 73.1
QL07p043643 Quercus lobata HOM05D002801 ORTHO05D003002 6.1e-95 351.3 245 72.7
Dinv37307 Davidia involucrata HOM05D002801 ORTHO05D003002 1.0e-94 350.5 247 73.3
Prupe.6G232900 Prunus persica HOM05D002801 ORTHO05D003002 5.1e-94 348.2 245 73.9
Cfa017598 Carpinus fangiana HOM05D002801 ORTHO05D003002 8.7e-94 347.4 245 72.7
Haze_20554 Corylus avellana HOM05D002801 ORTHO05D003002 1.9e-93 346.3 245 72.2
Duzib093G0446 Durio zibethinus HOM05D002801 ORTHO05D003002 3.3e-93 345.5 245 71.4
CiPaw.10G130400 Carya illinoinensis HOM05D002801 ORTHO05D003002 7.4e-93 344.4 245 72.7
Gohir.D04G110700 Gossypium hirsutum HOM05D002801 ORTHO05D003002 2.2e-92 342.8 245 71.8
Gorai.009G414900 Gossypium raimondii HOM05D002801 ORTHO05D003002 2.2e-92 342.8 245 71.8
Gohir.A04G072200 Gossypium hirsutum HOM05D002801 ORTHO05D003002 4.8e-92 341.7 245 71.8
Eucgr.A01690 Eucalyptus grandis HOM05D002801 ORTHO05D003002 6.3e-92 341.3 245 71.4
CiPaw.10G130300 Carya illinoinensis HOM05D002801 ORTHO05D003002 6.9e-91 337.8 245 70.6
Potri.006G125400 Populus trichocarpa HOM05D002801 ORTHO05D003002 6.9e-91 337.8 240 72.5
Aqoxy1G00134 Aquilegia oxysepala HOM05D002801 ORTHO05D003002 1.5e-90 336.7 242 75.6
Potri.016G091700 Populus trichocarpa HOM05D002801 ORTHO05D003002 3.4e-90 335.5 242 73.1
Atru.chr8.1823 Acer truncatum HOM05D002801 ORTHO05D003002 4.5e-90 335.1 245 71.0
Hma1.2p1_0205F.1_g087110 Hydrangea macrophylla HOM05D002801 ORTHO05D003002 1.0e-89 334.0 247 70.9
CANSAT80G2908 Cannabis sativa HOM05D002801 ORTHO05D003002 1.3e-89 333.6 241 71.0
MSTRG.26694 Avicennia marina HOM05D002801 ORTHO05D003002 1.7e-89 333.2 239 72.0
MD12G1113900 Malus domestica HOM05D002801 ORTHO05D003002 1.7e-89 333.2 245 70.6
VMungo0251G2590 Vigna mungo HOM05D002801 ORTHO05D003002 2.2e-89 332.8 246 70.3
Glyma.16G128300 Glycine max HOM05D002801 ORTHO05D003002 2.9e-89 332.4 246 69.5
Phvul.003G261500 Phaseolus vulgaris HOM05D002801 ORTHO05D003002 5.0e-89 331.6 246 69.9
RcHm_v2.0_Chr3g0470121 Rosa chinensis HOM05D002801 ORTHO05D003002 5.0e-89 331.6 237 73.0
Oeu040375.1 Olea europaea HOM05D002801 ORTHO05D003002 6.5e-89 331.3 244 70.1
Cpa.g.sc56.26 Carica papaya HOM05D002801 ORTHO05D003002 1.9e-88 329.7 245 70.2
Actinidia08779 Actinidia chinensis HOM05D002801 ORTHO05D003002 9.4e-88 327.4 242 70.2
vmacro07286 Vaccinium macrocarpon HOM05D002801 ORTHO05D003002 9.4e-88 327.4 244 70.9
Glyma.02G048100 Glycine max HOM05D002801 ORTHO05D003002 1.2e-87 327.0 246 69.5
Manes.08G009700 Manihot esculenta HOM05D002801 ORTHO05D003002 2.7e-87 325.9 245 70.6
Manes.09G067140 Manihot esculenta HOM05D002801 ORTHO05D003002 3.6e-87 325.5 244 69.7
MELO3C009350.2 Cucumis melo HOM05D002801 ORTHO05D003002 4.6e-87 325.1 244 68.0
CsaV3_3G035910 Cucumis sativus L. HOM05D002801 ORTHO05D003002 7.9e-87 324.3 244 67.6
Rhsim03G0092600 Rhododendron simsii HOM05D002801 ORTHO05D003002 7.9e-87 324.3 244 70.9
Sc02g0001680 Simmondsia chinensis HOM05D002801 ORTHO05D003002 3.0e-86 322.4 244 66.4
SalBow5G1472 Salvia bowleyana HOM05D002801 ORTHO05D003002 1.1e-85 320.5 239 71.1
Ciclev10011099m.g Citrus clementina HOM05D002801 ORTHO05D003002 1.5e-85 320.1 246 67.9
arahy.Tifrunner.gnm1.ann1.IM29MK Arachis hypogaea HOM05D002801 ORTHO05D003002 2.0e-85 319.7 246 68.3
SalBow5G4156 Salvia bowleyana HOM05D002801 ORTHO05D003002 2.6e-85 319.3 239 70.7
FAN05G5473 Fragaria x ananassa HOM05D002801 ORTHO05D003002 9.7e-85 317.4 228 73.2
arahy.Tifrunner.gnm1.ann1.KV6AVL Arachis hypogaea HOM05D002801 ORTHO05D003002 1.3e-84 317.0 246 67.9
FAN09G1888 Fragaria x ananassa HOM05D002801 ORTHO05D003002 2.2e-84 316.2 234 71.8
Sed0017434 Sechium edule HOM05D002801 ORTHO05D003002 2.2e-84 316.2 244 65.6
TWI74G0434 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 2.2e-84 316.2 249 67.5
ClCG10G020190 Citrullus lanatus HOM05D002801 ORTHO05D003002 2.8e-84 315.8 245 66.9
MBI19_g35569_MAGBIO Magnolia biondii HOM05D002801 ORTHO05D003002 3.7e-84 315.5 244 68.4
Ca_22518_v3 Cicer arietinum L. HOM05D002801 ORTHO05D003002 8.2e-84 314.3 247 67.6
FvH4_6g16260 Fragaria vesca HOM05D002801 ORTHO05D003002 8.2e-84 314.3 234 72.2
FAN14G2570 Fragaria x ananassa HOM05D002801 ORTHO05D003002 8.2e-84 314.3 234 72.2
Lj2A116G73 Lonicera japonica HOM05D002801 ORTHO05D003002 4.1e-83 312.0 246 67.1
TWI53G0691 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 6.9e-83 311.2 247 66.8
Lalb_Chr09g0333141 Lupinus albus HOM05D002801 ORTHO05D003002 1.7e-81 306.6 246 67.5
Sed0003779 Sechium edule HOM05D002801 ORTHO05D003002 2.2e-81 306.2 244 64.8
Peaxi162Scf00701g00031 Petunia axillaris HOM05D002801 ORTHO05D003002 2.9e-81 305.8 277 61.0
PGR004G0677 Punica granatum HOM05D002801 ORTHO05D003002 3.8e-81 305.4 247 66.4
EL10Ac7g16619 Beta vulgaris HOM05D002801 ORTHO05D003002 5.0e-81 305.1 247 66.4
Sabra16G0097400 Salix brachista HOM05D002801 ORTHO05D009785 8.5e-81 304.3 245 67.3
TPR.G24800 Trifolium pratense HOM05D002801 ORTHO05D003002 1.1e-80 303.9 247 66.0
MBI11_g28438_MAGBIO Magnolia biondii HOM05D002801 ORTHO05D003002 1.4e-80 303.5 219 71.2
Psat4g113080 Pisum sativum HOM05D002801 ORTHO05D003002 1.4e-80 303.5 247 66.8
Duzib128G1402 Durio zibethinus HOM05D002801 ORTHO05D003002 3.2e-80 302.4 245 64.5
Cc04_g12180 Coffea canephora HOM05D002801 ORTHO05D003002 7.2e-80 301.2 244 65.2
FAN02G3555 Fragaria x ananassa HOM05D002801 ORTHO05D003002 9.4e-80 300.8 233 69.1
PSO801G0542 Papaver somniferum HOM05D002801 ORTHO05D003002 1.6e-79 300.1 252 62.3
Lj4g0021696 Lotus japonicus HOM05D002801 ORTHO05D003002 3.6e-79 298.9 246 63.8
CAN.G900.43 Capsicum annuum HOM05D002801 ORTHO05D003002 4.7e-79 298.5 278 59.0
Medtr8g069965 Medicago truncatula HOM05D002801 ORTHO05D003002 1.4e-78 297.0 247 64.0
Nitab4.5_0002632g0070 Nicotiana tabacum HOM05D002801 ORTHO05D003002 1.4e-78 297.0 304 56.2
ECA238G4143 Erigeron canadensis HOM05D002801 ORTHO05D003002 2.0e-77 293.1 227 69.2
PSO339G6183 Papaver somniferum HOM05D002801 ORTHO05D003002 2.0e-77 293.1 252 61.9
SGA_v2.0_scaffold35G14132 Striga asiatica HOM05D002801 ORTHO05D003002 3.3e-77 292.4 240 66.2
THA.LOC104806477 Tarenaya hassleriana HOM05D002801 ORTHO05D003002 5.7e-77 291.6 244 63.9
Solyc09g008100.4 Solanum lycopersicum HOM05D002801 ORTHO05D003002 1.7e-76 290.0 277 59.9
Sopen09g002910 Solanum pennellii HOM05D002801 ORTHO05D003002 2.8e-76 289.3 216 70.8
Migut.L01697 Erythranthe guttata HOM05D002801 ORTHO05D003002 3.7e-76 288.9 282 57.4
Carub.0004s1880 Capsella rubella HOM05D002801 ORTHO05D003002 3.1e-75 285.8 241 63.9
AL4G33200 Arabidopsis lyrata HOM05D002801 ORTHO05D003002 5.3e-75 285.0 240 64.2
Gohir.A01G214500 Gossypium hirsutum HOM05D002801 ORTHO05D003002 5.3e-75 285.0 245 63.3
Lalb_Chr16g0391251 Lupinus albus HOM05D002801 ORTHO05D003002 9.1e-75 284.3 246 63.8
Thhalv10016298m.g Eutrema salsugineum HOM05D002801 ORTHO05D003002 2.6e-74 282.7 244 62.3
Gohir.D01G203000 Gossypium hirsutum HOM05D002801 ORTHO05D003002 2.6e-74 282.7 245 62.9
AT2G36960 Arabidopsis thaliana HOM05D002801 ORTHO05D003002 7.7e-74 281.2 241 62.7
Sp4g19240 Schrenkiella parvula HOM05D002801 ORTHO05D003002 7.7e-74 281.2 244 61.1
CARHR131420 Cardamine hirsuta HOM05D002801 ORTHO05D003002 1.3e-73 280.4 244 61.1
Sabra06G0099000 Salix brachista HOM05D002801 ORTHO05D003002 2.9e-73 279.3 293 56.3
Aa31LG5G22170 Aethionema arabicum HOM05D002801 ORTHO05D003002 8.5e-73 277.7 244 61.5
Nn2g13773 Nelumbo nucifera HOM05D002801 ORTHO05D003002 1.5e-72 276.9 174 80.5
BcaC02g11818 Brassica carinata HOM05D002801 ORTHO05D003002 3.6e-71 272.3 244 60.2
BolC4t22748H Brassica oleracea HOM05D002801 ORTHO05D003002 4.7e-71 271.9 244 60.2
A05p08890 Brassica napus HOM05D002801 ORTHO05D003002 1.0e-70 270.8 244 60.2
C04p11020 Brassica napus HOM05D002801 ORTHO05D003002 1.0e-70 270.8 244 60.2
BraA05t19854Z Brassica rapa HOM05D002801 ORTHO05D003002 1.0e-70 270.8 244 60.2
BcaB01g03805 Brassica carinata HOM05D002801 ORTHO05D003002 2.2e-68 263.1 244 58.2
BcaB02g09317 Brassica carinata HOM05D002801 ORTHO05D003002 2.2e-68 263.1 244 58.2
CDE06G1853 Ceratophyllum demersum HOM05D002801 ORTHO05D003002 1.1e-67 260.8 201 68.7
HanXRQChr02g0053371 Helianthus annuus HOM05D002801 ORTHO05D003002 1.8e-67 260.0 196 72.4
HanXRQChr01g0027631 Helianthus annuus HOM05D002801 ORTHO05D003002 4.1e-67 258.8 174 76.4
CDE02G0847 Ceratophyllum demersum HOM05D002801 ORTHO05D003002 5.3e-67 258.5 201 69.2
Zm00001eb399030 Zea mays HOM05D002801 ORTHO05D003002 1.8e-62 243.4 206 66.0
DCAR_017687 Daucus carota HOM05D002801 ORTHO05D003002 3.0e-62 242.7 243 57.2
HPP92_012371 Vanilla planifolia HOM05D002801 ORTHO05D003002 1.5e-61 240.4 176 70.5
Nitab4.5_0003861g0040 Nicotiana tabacum HOM05D002801 ORTHO05D003002 3.4e-61 239.2 277 51.6
Os03g0241100 Oryza sativa ssp. japonica HOM05D002801 ORTHO05D003002 6.3e-60 235.0 199 65.3
ECA248G2038 Erigeron canadensis HOM05D002801 ORTHO05D003002 1.4e-59 233.8 246 53.7
Lsat_1_v5_gn_6_11100 Lactuca sativa HOM05D002801 ORTHO05D003002 1.2e-58 230.7 172 73.3
SHI12444 Sapria himalayana HOM05D002801 ORTHO05D003002 2.0e-58 229.9 289 50.5
ATR0115G018 Amborella trichopoda HOM05D002801 ORTHO05D003002 2.6e-53 213.0 174 65.5
BraA04t18309Z Brassica rapa HOM05D002801 ORTHO05D003002 5.4e-51 205.3 184 59.8
Ah.15g092490 Amaranthus hybridus HOM05D002801 ORTHO05D003002 3.8e-49 199.1 147 69.4
Os03g0773100 Oryza sativa ssp. japonica HOM05D002801 ORTHO05D003002 1.9e-48 196.8 123 80.5
Mapoly0009s0010 Marchantia polymorpha HOM05D002801 ORTHO05D003002 8.0e-47 191.4 228 49.6
AUR62026908 Chenopodium quinoa HOM05D002801 ORTHO05D003002 4.0e-46 189.1 175 61.1
CBR_g26407 Chara braunii HOM05D002801 ORTHO05D003002 1.6e-42 177.2 118 71.2
CSS0037052 Camellia sinensis var. sinensis HOM05D002801 ORTHO05D003002 2.3e-41 173.3 132 73.5
SMO116G0270 Selaginella moellendorffii HOM05D002801 ORTHO05D003002 8.6e-41 171.4 216 46.8
C04p65610 Brassica napus HOM05D002801 ORTHO05D003002 6.2e-39 165.2 184 51.6
CSS0021053 Camellia sinensis var. sinensis HOM05D002801 ORTHO05D003002 8.0e-39 164.9 117 70.1
HanXRQChr17g0568771 Helianthus annuus HOM05D002801 ORTHO05D003002 4.0e-38 162.5 101 78.2
Zm00001eb058920 Zea mays HOM05D002801 ORTHO05D003002 1.2e-31 141.0 79 88.6
AUR62044138 Chenopodium quinoa HOM05D002801 ORTHO05D003002 1.1e-30 137.9 147 53.7
Zm00001eb010280 Zea mays HOM05D002801 ORTHO05D003002 2.8e-23 113.2 147 51.0
A04p28250 Brassica napus HOM05D002801 ORTHO05D003002 5.8e-21 105.5 61 85.2
AUR62044224 Chenopodium quinoa HOM05D002801 ORTHO05D003002 5.1e-09 65.9 71 52.1
MCO07G427 Micromonas commoda HOM05D002801 ORTHO05D003002 8.7e-09 65.1 204 28.4
CSS0035026 Camellia sinensis var. sinensis HOM05D002801 ORTHO05D003002 1.1e-08 64.7 67 55.2
SGA_v2.0_scaffold112G31671 Striga asiatica HOM05D002801 ORTHO05D003002 3.6e-07 59.7 114 39.5
BolC4t28051H Brassica oleracea HOM05D002801 ORTHO05D003002 1.8e-06 57.4 30 90.0
SMO269G0031 Selaginella moellendorffii HOM05D062532 ORTHO05D003002 1.8e-06 57.4 80 45.0


User provided reference genes

Program Settings