Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 2.0e-52 208.8 100 100.0
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 2.3e-40 168.7 98 81.6
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 1.8e-29 132.5 97 64.9
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 5.3e-29 131.0 98 63.3
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 6.9e-29 130.6 98 61.2
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.5e-28 129.4 98 63.3
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 3.4e-28 128.3 98 61.2
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 3.4e-28 128.3 91 58.2
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 7.6e-28 127.1 92 60.9
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 4.9e-27 124.4 93 59.1
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.9e-27 124.4 97 58.8
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.9e-27 124.4 97 58.8
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 1.4e-26 122.9 86 64.0
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 1.9e-26 122.5 98 58.2
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.4e-26 122.1 91 58.2
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 2.4e-26 122.1 91 58.2
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 4.2e-26 121.3 94 61.7
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 4.2e-26 121.3 91 62.6
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 7.1e-26 120.6 97 56.7
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 7.1e-26 120.6 91 58.2
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 9.3e-26 120.2 98 56.1
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.2e-25 119.8 90 58.9
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 1.2e-25 119.8 91 57.1
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.2e-25 119.8 91 57.1
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 1.2e-25 119.8 99 58.6
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 1.2e-25 119.8 75 68.0
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 1.6e-25 119.4 97 59.8
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.6e-25 119.4 98 60.2
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 2.1e-25 119.0 100 58.0
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 2.1e-25 119.0 98 56.1
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 2.1e-25 119.0 84 58.3
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 2.7e-25 118.6 98 56.1
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 2.7e-25 118.6 97 55.7
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 3.5e-25 118.2 92 56.5
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 3.5e-25 118.2 98 57.1
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 4.6e-25 117.9 91 57.1
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 4.6e-25 117.9 98 58.2
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 7.8e-25 117.1 92 56.5
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.0e-24 116.7 92 54.3
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 1.3e-24 116.3 98 54.1
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 1.7e-24 115.9 100 58.0
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 2.3e-24 115.5 98 51.0
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 3.0e-24 115.2 92 56.5
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 3.0e-24 115.2 89 56.2
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 3.9e-24 114.8 74 68.9
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 3.9e-24 114.8 103 57.3
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 5.1e-24 114.4 98 55.1
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 5.1e-24 114.4 79 62.0
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 5.1e-24 114.4 91 53.8
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 5.1e-24 114.4 98 53.1
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 5.1e-24 114.4 103 57.3
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 6.6e-24 114.0 98 53.1
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 1.1e-23 113.2 98 55.1
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 1.5e-23 112.8 90 54.4
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 1.5e-23 112.8 94 51.1
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 1.5e-23 112.8 75 62.7
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 1.9e-23 112.5 97 56.7
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 1.9e-23 112.5 98 51.0
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 1.9e-23 112.5 93 54.8
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 1.9e-23 112.5 98 56.1
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.5e-23 112.1 94 54.3
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 3.3e-23 111.7 93 53.8
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 4.3e-23 111.3 90 51.1
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 5.6e-23 110.9 98 54.1
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 9.6e-23 110.2 92 52.2
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 1.3e-22 109.8 70 70.0
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 1.6e-22 109.4 101 54.5
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 2.1e-22 109.0 77 63.6
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 2.1e-22 109.0 100 51.0
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 3.6e-22 108.2 124 48.4
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 3.6e-22 108.2 90 51.1
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 3.6e-22 108.2 97 54.6
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 4.8e-22 107.8 86 52.3
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 6.2e-22 107.5 92 52.2
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 6.2e-22 107.5 98 51.0
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 8.1e-22 107.1 89 50.6
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.1e-21 106.7 89 50.6
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.8e-21 105.9 98 46.9
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 1.8e-21 105.9 88 52.3
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 2.4e-21 105.5 76 57.9
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 2.4e-21 105.5 88 53.4
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 2.4e-21 105.5 103 50.5
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 2.4e-21 105.5 99 50.5
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 4.0e-21 104.8 98 50.0
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 6.9e-21 104.0 97 51.5
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 6.9e-21 104.0 98 50.0
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 9.0e-21 103.6 98 53.1
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 9.0e-21 103.6 98 50.0
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 1.2e-20 103.2 98 52.0
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.0e-20 102.4 94 47.9
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 3.4e-20 101.7 70 61.4
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 3.4e-20 101.7 60 73.3
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 3.4e-20 101.7 99 48.5
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 5.8e-20 100.9 98 48.0
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 7.6e-20 100.5 81 49.4
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.3e-19 99.8 90 47.8
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.7e-19 99.4 74 52.7
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.7e-19 99.4 97 49.5
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.7e-19 99.4 92 50.0
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.2e-19 99.0 69 60.9
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 2.2e-19 99.0 82 51.2
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 3.8e-19 98.2 98 51.0
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 3.8e-19 98.2 74 55.4
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 4.9e-19 97.8 74 52.7
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 4.9e-19 97.8 75 57.3
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 8.4e-19 97.1 98 49.0
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 1.1e-18 96.7 97 49.5
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 1.4e-18 96.3 93 45.2
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.4e-18 96.3 97 48.5
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.9e-18 95.9 67 58.2
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 1.9e-18 95.9 97 48.5
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 3.2e-18 95.1 73 56.2
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 4.2e-18 94.7 68 58.8
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 4.2e-18 94.7 68 58.8
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 4.2e-18 94.7 68 58.8
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 4.2e-18 94.7 68 58.8
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.2e-18 94.7 96 49.0
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 9.3e-18 93.6 59 67.8
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.2e-17 93.2 68 55.9
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.2e-17 93.2 95 48.4
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 1.6e-17 92.8 74 52.7
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 1.6e-17 92.8 68 57.4
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 1.6e-17 92.8 68 54.4
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 2.1e-17 92.4 80 47.5
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 3.5e-17 91.7 74 48.6
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 4.6e-17 91.3 76 47.4
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 4.6e-17 91.3 74 50.0
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 4.6e-17 91.3 98 43.9
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 6.0e-17 90.9 92 45.7
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 6.0e-17 90.9 68 55.9
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 6.0e-17 90.9 76 53.9
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 7.9e-17 90.5 99 46.5
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 7.9e-17 90.5 76 47.4
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 7.9e-17 90.5 76 47.4
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 7.9e-17 90.5 76 47.4
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 7.9e-17 90.5 76 47.4
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 7.9e-17 90.5 92 44.6
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 1.0e-16 90.1 68 55.9
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 1.3e-16 89.7 100 42.0
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 1.3e-16 89.7 60 63.3
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.3e-16 89.0 100 45.0
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 3.9e-16 88.2 98 40.8
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 3.9e-16 88.2 90 44.4
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 3.9e-16 88.2 98 42.9
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 5.1e-16 87.8 82 46.3
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 5.1e-16 87.8 59 64.4
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 5.1e-16 87.8 92 45.7
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 6.7e-16 87.4 68 54.4
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 6.7e-16 87.4 110 40.9
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 1.1e-15 86.7 61 59.0
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 1.5e-15 86.3 59 62.7
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 1.5e-15 86.3 100 48.0
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 1.5e-15 86.3 97 44.3
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 1.5e-15 86.3 96 41.7
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 1.9e-15 85.9 61 60.7
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 4.3e-15 84.7 59 59.3
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 5.6e-15 84.3 98 45.9
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 7.4e-15 84.0 67 52.2
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 9.6e-15 83.6 60 56.7
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 9.6e-15 83.6 94 39.4
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 3.7e-14 81.6 58 58.6
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 6.2e-14 80.9 60 56.7
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 8.1e-14 80.5 68 47.1
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.2e-12 76.6 63 52.4
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.2e-12 76.6 98 36.7
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 4.5e-12 74.7 98 35.7
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 3.8e-11 71.6 84 40.5
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 1.9e-10 69.3 69 44.9
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 3.2e-10 68.6 71 42.3
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 5.5e-10 67.8 69 43.5
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.0e-08 63.5 69 39.1
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 2.3e-08 62.4 72 44.4
Sabra05G0012900 Salix brachista HOM05D002444 ORTHO05D004748 3.9e-08 61.6 89 40.4
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 8.7e-08 60.5 74 41.9
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 1.9e-07 59.3 66 39.4
Oeu056372.1 Olea europaea HOM05D002444 ORTHO05D004748 4.3e-07 58.2 67 41.8


User provided reference genes

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