Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 3.5e-158 561.6 288 100.0
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.2e-97 360.5 288 67.4
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 1.8e-93 346.7 290 63.4
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 1.8e-93 346.7 288 65.3
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.5e-92 342.8 288 63.5
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 5.6e-92 341.7 288 63.2
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 5.6e-92 341.7 290 64.8
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 5.6e-92 341.7 282 64.9
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 6.2e-91 338.2 289 64.7
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 8.1e-91 337.8 288 62.8
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 1.8e-90 336.7 288 63.2
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.8e-90 336.7 288 64.6
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 9.0e-90 334.3 284 64.1
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 1.2e-89 334.0 288 61.8
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 3.4e-89 332.4 291 61.5
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 1.0e-88 330.9 243 71.2
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.0e-88 330.9 304 59.2
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 6.5e-88 328.2 281 63.7
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 2.5e-87 326.2 289 61.2
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.2e-86 323.9 289 60.2
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 2.7e-86 322.8 284 60.2
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 3.5e-86 322.4 290 60.7
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 4.6e-86 322.0 364 53.0
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 4.6e-86 322.0 284 61.3
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.8e-85 320.1 281 60.5
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.8e-85 320.1 281 60.5
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 2.3e-85 319.7 289 61.2
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 2.3e-85 319.7 289 61.6
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.0e-85 319.3 246 66.3
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 5.1e-85 318.5 289 60.6
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 8.7e-85 317.8 284 60.6
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 1.1e-84 317.4 289 61.2
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.9e-84 316.6 288 59.7
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 2.5e-84 316.2 288 61.5
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 2.5e-84 316.2 285 58.9
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 3.3e-84 315.8 288 60.8
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 3.3e-84 315.8 283 61.1
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 4.3e-84 315.5 289 59.2
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 5.7e-84 315.1 286 61.5
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 5.7e-84 315.1 288 60.4
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 5.7e-84 315.1 285 62.1
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 7.4e-84 314.7 284 59.2
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.1e-83 313.2 289 58.8
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 2.8e-83 312.8 288 59.0
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 2.8e-83 312.8 289 58.8
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 3.7e-83 312.4 301 58.8
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 8.2e-83 311.2 284 58.1
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 8.2e-83 311.2 289 59.9
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 1.1e-82 310.8 282 62.4
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.1e-82 310.8 288 60.1
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.1e-82 310.8 288 60.1
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.1e-82 310.8 288 60.8
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 1.1e-82 310.8 290 57.6
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.1e-82 310.8 288 58.3
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.4e-82 310.5 306 57.2
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 3.1e-82 309.3 284 58.5
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.1e-82 309.3 288 59.7
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 5.3e-82 308.5 305 57.4
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 6.9e-82 308.1 305 57.4
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 6.9e-82 308.1 288 57.6
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 6.9e-82 308.1 307 58.3
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 1.2e-81 307.4 290 60.0
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 1.5e-81 307.0 285 60.0
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 3.4e-81 305.8 281 59.4
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 4.5e-81 305.4 288 57.6
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 5.9e-81 305.1 288 56.6
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 5.9e-81 305.1 283 59.4
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 5.9e-81 305.1 285 58.2
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 7.6e-81 304.7 288 58.3
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.0e-80 304.3 288 57.3
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 6.5e-80 301.6 249 64.7
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.2e-78 297.4 288 55.6
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.2e-78 297.4 231 66.2
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 2.7e-78 296.2 282 56.4
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 4.6e-78 295.4 282 57.4
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 3.9e-77 292.4 283 58.0
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 1.9e-76 290.0 288 56.9
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 2.5e-76 289.7 282 55.0
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 1.3e-75 287.3 287 54.4
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 8.2e-75 284.6 289 56.7
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 1.8e-74 283.5 287 55.1
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 4.1e-74 282.3 291 55.0
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 5.3e-74 282.0 287 54.7
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 5.3e-74 282.0 381 48.3
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 1.2e-73 280.8 285 54.7
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 1.5e-73 280.4 281 55.5
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 2.6e-73 279.6 285 55.4
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 2.6e-73 279.6 233 63.1
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 7.7e-73 278.1 204 69.1
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.3e-72 277.3 284 54.6
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 6.5e-72 275.0 281 55.9
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 8.5e-72 274.6 287 55.1
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 1.4e-71 273.9 288 52.4
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 7.2e-71 271.6 284 54.6
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 4.6e-70 268.9 199 69.3
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 6.1e-70 268.5 224 60.3
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 1.8e-69 266.9 247 59.9
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 2.3e-69 266.5 288 50.7
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 9.7e-68 261.2 288 52.1
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.4e-66 257.3 282 49.6
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 2.6e-65 253.1 285 53.0
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 1.4e-63 247.3 260 52.3
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 2.5e-63 246.5 249 57.0
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 1.2e-62 244.2 218 60.6
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.2e-62 244.2 185 69.2
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 2.1e-62 243.4 246 56.1
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 2.1e-62 243.4 218 59.6
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 6.1e-62 241.9 281 49.1
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 1.1e-60 237.7 178 67.4
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 2.8e-59 233.0 230 53.5
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 3.1e-58 229.6 201 61.2
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 3.8e-56 222.6 185 63.8
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 3.2e-55 219.5 281 44.5
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 4.2e-55 219.2 204 59.8
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 7.2e-55 218.4 194 61.3
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 7.2e-55 218.4 221 53.4
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 2.1e-54 216.9 188 62.8
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 8.0e-54 214.9 277 47.7
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 4.4e-52 209.1 289 43.9
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 4.8e-51 205.7 460 35.4
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.6e-49 200.7 194 54.1
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 2.7e-49 199.9 160 69.4
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 7.7e-49 198.4 167 64.1
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 3.8e-48 196.1 156 66.7
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 8.5e-48 194.9 220 47.7
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 6.8e-45 185.3 188 55.9
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 7.5e-44 181.8 160 61.9
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 7.2e-39 165.2 286 36.7
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.6e-38 164.1 133 65.4
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 4.7e-38 162.5 150 60.0
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 8.0e-38 161.8 211 44.1
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.4e-37 161.0 157 57.3
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 4.9e-35 152.5 184 48.9
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 8.0e-30 135.2 127 55.1
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 1.8e-29 134.0 159 46.5
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 6.8e-29 132.1 163 46.6
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 8.3e-27 125.2 81 74.1
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 1.4e-26 124.4 151 47.0
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 9.2e-26 121.7 150 45.3
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.2e-25 121.3 214 36.9
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 5.2e-21 105.9 166 39.8
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 5.2e-21 105.9 166 39.8
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 5.2e-21 105.9 66 74.2
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 1.5e-20 104.4 67 71.6
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 2.2e-19 100.5 126 50.8
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 3.7e-19 99.8 70 68.6
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 6.4e-19 99.0 62 75.8
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 3.2e-18 96.7 65 66.2
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.2e-14 84.7 103 49.5
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 2.8e-14 83.6 52 76.9
Oeu020446.1 Olea europaea HOM05D004791 ORTHO05D005637 4.0e-13 79.7 85 55.3
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 4.0e-13 79.7 111 45.0
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.2e-12 78.2 103 46.6
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.0e-08 65.1 39 79.5
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 9.5e-07 58.5 34 79.4


User provided reference genes

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