Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0330 Trochodendron aralioides HOM05D007808 ORTHO05D009895 6.5e-269 930.2 501 100.0
Nn1g02938 Nelumbo nucifera HOM05D007808 ORTHO05D009895 6.7e-165 584.7 494 60.7
QL09p041160 Quercus lobata HOM05D007808 ORTHO05D009895 7.9e-142 508.1 498 54.8
Hma1.2p1_0273F.1_g109280 Hydrangea macrophylla HOM05D007808 ORTHO05D009895 1.5e-140 503.8 497 53.1
Aqoxy5G00155 Aquilegia oxysepala HOM05D007808 ORTHO05D009895 6.5e-136 488.4 492 53.7
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 5.5e-135 485.3 485 54.2
Potri.014G192200 Populus trichocarpa HOM05D007808 ORTHO05D009895 2.1e-134 483.4 504 52.0
MBI10_g30718_MAGBIO Magnolia biondii HOM05D007808 ORTHO05D009895 1.8e-133 480.3 461 55.5
Actinidia37545 Actinidia chinensis HOM05D007808 ORTHO05D009895 2.3e-133 479.9 498 52.6
Manes.13G040600 Manihot esculenta HOM05D007808 ORTHO05D009895 4.4e-132 475.7 505 51.5
Atru.chr5.1818 Acer truncatum HOM05D007808 ORTHO05D009895 9.7e-132 474.6 500 52.0
Ciclev10020041m.g Citrus clementina HOM05D007808 ORTHO05D009895 1.3e-131 474.2 504 51.4
Duzib138G1393 Durio zibethinus HOM05D007808 ORTHO05D009895 1.1e-130 471.1 511 49.7
GSVIVG01028406001 Vitis vinifera HOM05D007808 ORTHO05D009895 4.1e-130 469.2 483 53.2
PSO832G1361 Papaver somniferum HOM05D007808 ORTHO05D009895 8.5e-128 461.5 492 49.0
Gohir.D07G157600 Gossypium hirsutum HOM05D007808 ORTHO05D009895 3.6e-126 456.1 504 48.6
Thecc.01G251900 Theobroma cacao HOM05D007808 ORTHO05D009895 6.7e-125 451.8 504 49.0
Prupe.8G216500 Prunus persica HOM05D007808 ORTHO05D009895 1.1e-124 451.1 497 50.3
Gohir.A07G151000 Gossypium hirsutum HOM05D007808 ORTHO05D009895 7.4e-124 448.4 504 47.8
TWI18G1304 Tripterygium wilfordii HOM05D007808 ORTHO05D009895 1.4e-122 444.1 521 47.4
COL.COLO4_10584 Corchorus olitorius HOM05D007808 ORTHO05D009895 1.7e-120 437.2 522 47.1
RcHm_v2.0_Chr6g0286881 Rosa chinensis HOM05D007808 ORTHO05D009895 8.5e-120 434.9 496 48.0
CANSAT01G0990 Cannabis sativa HOM05D007808 ORTHO05D009895 4.2e-119 432.6 495 48.9
FvH4_2g20710 Fragaria vesca HOM05D007808 ORTHO05D009895 8.5e-112 408.3 493 45.8
CSS0017675 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 2.3e-109 400.2 373 58.4
CSS0046569 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 3.0e-109 399.8 373 58.4
PGR031G1809 Punica granatum HOM05D007808 ORTHO05D009895 5.4e-106 389.0 491 43.4
HanXRQChr04g0111341 Helianthus annuus HOM05D007808 ORTHO05D009895 9.1e-106 388.3 495 44.2
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 2.7e-105 386.7 511 44.2
FAN27G2486 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.1e-103 381.3 477 45.5
FAN20G2653 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.6e-102 377.5 477 45.3
Migut.D00468 Erythranthe guttata HOM05D007808 ORTHO05D009895 8.0e-102 375.2 496 44.2
DCAR_018515 Daucus carota HOM05D007808 ORTHO05D009895 1.0e-101 374.8 470 44.9
Sopen09g028660 Solanum pennellii HOM05D007808 ORTHO05D009895 2.0e-100 370.5 491 42.6
Solyc09g072860.2 Solanum lycopersicum HOM05D007808 ORTHO05D009895 1.7e-99 367.5 490 42.0
FAN15G3261 Fragaria x ananassa HOM05D007808 ORTHO05D009895 3.5e-97 359.8 464 44.2
Oeu039657.1 Olea europaea HOM05D007808 ORTHO05D009895 1.2e-94 351.3 544 38.8
Peaxi162Scf00415g00913 Petunia axillaris HOM05D007808 ORTHO05D009895 4.7e-94 349.4 472 43.2
FAN24G0750 Fragaria x ananassa HOM05D007808 ORTHO05D009895 6.1e-94 349.0 458 44.3
PSO764G0215 Papaver somniferum HOM05D007808 ORTHO05D009895 1.2e-92 344.7 492 40.0
SalBow4G3111 Salvia bowleyana HOM05D007808 ORTHO05D009895 1.2e-92 344.7 476 42.4
AL8G16070 Arabidopsis lyrata HOM05D007808 ORTHO05D009895 2.0e-92 344.0 492 40.0
THA.LOC104801132 Tarenaya hassleriana HOM05D007808 ORTHO05D009895 2.0e-92 344.0 494 39.9
Sc05g0003060 Simmondsia chinensis HOM05D007808 ORTHO05D009895 7.5e-92 342.0 435 44.4
Cc01_g17900 Coffea canephora HOM05D007808 ORTHO05D009895 1.3e-91 341.3 491 40.9
Carub.0008s0453 Capsella rubella HOM05D007808 ORTHO05D009895 2.2e-91 340.5 492 40.2
ATR0736G152 Amborella trichopoda HOM05D007808 ORTHO05D009895 1.2e-89 334.7 465 44.1
AT5G44010 Arabidopsis thaliana HOM05D007808 ORTHO05D009895 2.7e-89 333.6 489 39.9
Sabra14G0143900 Salix brachista HOM05D007808 ORTHO05D009895 4.6e-89 332.8 357 50.1
HPP92_025831 Vanilla planifolia HOM05D007808 ORTHO05D009895 1.0e-88 331.6 473 40.6
BcaB07g30982 Brassica carinata HOM05D007808 ORTHO05D009895 3.9e-88 329.7 488 40.4
Nitab4.5_0010039g0030 Nicotiana tabacum HOM05D007808 ORTHO05D009895 4.0e-85 319.7 476 41.6
BcaC04g21876 Brassica carinata HOM05D007808 ORTHO05D009895 2.6e-84 317.0 488 38.7
C09p26260 Brassica napus HOM05D007808 ORTHO05D009895 2.6e-84 317.0 488 38.7
A09p20750 Brassica napus HOM05D007808 ORTHO05D009895 1.7e-83 314.3 488 38.5
BraA09t37679Z Brassica rapa HOM05D007808 ORTHO05D009895 2.9e-83 313.5 488 38.7
Nitab4.5_0000845g0040 Nicotiana tabacum HOM05D007808 ORTHO05D009895 7.1e-82 308.9 476 39.5
SGA_v2.0_scaffold1G00644 Striga asiatica HOM05D007808 ORTHO05D009895 1.0e-80 305.1 513 37.6
Eucgr.A01321 Eucalyptus grandis HOM05D007808 ORTHO05D009895 1.4e-77 294.7 409 39.6
Lsat_1_v5_gn_8_92100 Lactuca sativa HOM05D007808 ORTHO05D009895 3.7e-75 286.6 446 41.9
Haze_24684 Corylus avellana HOM05D007808 ORTHO05D009895 4.3e-71 273.1 268 56.3
Os02g0814600 Oryza sativa ssp. japonica HOM05D007808 ORTHO05D009895 8.1e-70 268.9 496 33.3
CARHR179280 Cardamine hirsuta HOM05D007808 ORTHO05D009895 1.8e-69 267.7 438 38.4
Zm00001eb191560 Zea mays HOM05D007808 ORTHO05D009895 3.2e-66 256.9 496 34.1
BolC9t55528H Brassica oleracea HOM05D007808 ORTHO05D009895 2.5e-63 247.3 434 36.2
Thhalv10003421m.g Eutrema salsugineum HOM05D007808 ORTHO05D009895 9.6e-63 245.4 490 33.5
CiPaw.04G189500 Carya illinoinensis HOM05D007808 ORTHO05D009895 1.5e-60 238.0 220 52.3
CAN.G1395.2 Capsicum annuum HOM05D007808 ORTHO05D009895 1.3e-59 235.0 352 42.3
Cpa.g.sc87.15 Carica papaya HOM05D007808 ORTHO05D009895 2.2e-59 234.2 269 50.2
BcaC04g21877 Brassica carinata HOM05D007808 ORTHO05D009895 3.3e-55 220.3 426 34.5
CDE02G3651 Ceratophyllum demersum HOM05D007808 ORTHO05D009895 7.4e-47 192.6 317 39.1
Gorai.002G091900 Gossypium raimondii HOM05D007808 ORTHO05D009895 2.6e-44 184.1 271 40.6
ECA236G2323 Erigeron canadensis HOM05D000728 ORTHO05D001586 4.2e-42 176.8 285 38.9
CiPaw.04G189400 Carya illinoinensis HOM05D007808 ORTHO05D009895 1.4e-29 135.2 89 74.2
SEGI_27571 Sequoiadendron giganteum HOM05D007808 ORTHO05D009895 2.7e-25 120.9 284 29.2
Gohir.D11G218200 Gossypium hirsutum HOM05D007808 ORTHO05D009895 7.7e-20 102.8 185 34.1
FAN27G0174 Fragaria x ananassa HOM05D007808 ORTHO05D009895 3.0e-16 90.9 54 72.2
AagrBONN_evm.TU.Sc2ySwM_117.2846 Anthoceros agrestis HOM05D007808 ORTHO05D009895 5.1e-16 90.1 453 21.0
Sp2g08850 Schrenkiella parvula HOM05D007808 ORTHO05D009895 2.0e-15 88.2 436 22.5
PGSC0003DMG400003825 Solanum tuberosum HOM05D007808 ORTHO05D009895 2.6e-15 87.8 55 67.3
CANSAT56G3388 Cannabis sativa HOM05D007808 ORTHO05D009895 3.1e-13 80.9 51 68.6
Pp3c1_42330 Physcomitrium patens HOM05D007808 ORTHO05D009895 5.5e-10 70.1 132 31.1
C07p26600 Brassica napus HOM05D007808 ORTHO05D009895 2.8e-06 57.8 83 43.4


User provided reference genes

Program Settings