Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0301 Trochodendron aralioides HOM05D004225 ORTHO05D004728 0.0e+00 1317.4 681 100.0
Dinv25097 Davidia involucrata HOM05D004225 ORTHO05D004728 1.3e-251 873.2 683 69.3
QL07p018789 Quercus lobata HOM05D004225 ORTHO05D004728 1.3e-248 863.2 685 67.4
Thecc.05G246800 Theobroma cacao HOM05D004225 ORTHO05D004728 8.8e-245 850.5 684 66.8
Actinidia37791 Actinidia chinensis HOM05D004225 ORTHO05D004728 4.4e-244 848.2 685 67.0
Duzib177G1146 Durio zibethinus HOM05D004225 ORTHO05D004728 1.3e-243 846.7 683 66.3
Prupe.7G007400 Prunus persica HOM05D004225 ORTHO05D004728 2.4e-242 842.4 688 65.3
COL.COLO4_32974 Corchorus olitorius HOM05D004225 ORTHO05D004728 9.1e-242 840.5 684 65.9
CSS0022490 Camellia sinensis var. sinensis HOM05D004225 ORTHO05D004728 1.2e-241 840.1 684 66.7
Actinidia03947 Actinidia chinensis HOM05D004225 ORTHO05D004728 2.7e-241 839.0 686 66.8
Cfa017675 Carpinus fangiana HOM05D004225 ORTHO05D004728 1.3e-240 836.6 685 66.1
Atru.chr2.1407 Acer truncatum HOM05D004225 ORTHO05D004728 2.3e-240 835.9 688 66.7
Rhsim03G0054800 Rhododendron simsii HOM05D004225 ORTHO05D004728 2.9e-240 835.5 687 66.8
Haze_20474 Corylus avellana HOM05D004225 ORTHO05D004728 3.3e-239 832.0 685 66.0
Aqoxy1G00553 Aquilegia oxysepala HOM05D004225 ORTHO05D004728 2.8e-238 828.9 684 65.1
CSS0005542 Camellia sinensis var. sinensis HOM05D004225 ORTHO05D004728 3.6e-238 828.6 684 66.1
Manes.09G139100 Manihot esculenta HOM05D004225 ORTHO05D004728 4.7e-238 828.2 684 64.9
GSVIVG01022462001 Vitis vinifera HOM05D004225 ORTHO05D004728 1.0e-237 827.0 683 66.6
PSO339G3394 Papaver somniferum HOM05D004225 ORTHO05D004728 1.5e-236 823.2 684 64.8
PSO384G1703 Papaver somniferum HOM05D004225 ORTHO05D004728 1.7e-235 819.7 684 64.5
Potri.013G055300 Populus trichocarpa HOM05D004225 ORTHO05D004728 9.2e-234 813.9 684 64.6
Duzib128G0769 Durio zibethinus HOM05D004225 ORTHO05D004728 2.0e-233 812.8 685 63.6
MBI11_g07706_MAGBIO Magnolia biondii HOM05D004225 ORTHO05D004728 4.6e-233 811.6 686 65.0
MD12G1006900 Malus domestica HOM05D004225 ORTHO05D004728 5.9e-233 811.2 682 64.7
Cpa.g.sc161.2 Carica papaya HOM05D004225 ORTHO05D004728 1.9e-231 806.2 682 63.9
RcHm_v2.0_Chr3g0496671 Rosa chinensis HOM05D004225 ORTHO05D004728 3.3e-231 805.4 686 64.4
vmacro07548 Vaccinium macrocarpon HOM05D004225 ORTHO05D004728 2.8e-230 802.4 728 62.2
Glyma.19G113700 Glycine max HOM05D004225 ORTHO05D004728 3.6e-230 802.0 683 63.8
CiPaw.10G126100 Carya illinoinensis HOM05D004225 ORTHO05D004728 1.4e-229 800.0 687 64.3
MD14G1004600 Malus domestica HOM05D004225 ORTHO05D004728 1.2e-228 797.0 681 64.8
Gohir.D11G244200 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.4e-228 795.4 682 63.5
VMungo1383G3152 Vigna mungo HOM05D004225 ORTHO05D004728 7.5e-228 794.3 685 63.1
Gorai.007G259700 Gossypium raimondii HOM05D004225 ORTHO05D004728 1.3e-227 793.5 683 63.5
Gohir.A11G233000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.4e-226 789.3 682 62.9
Sabra13G0049600 Salix brachista HOM05D004225 ORTHO05D004728 4.6e-225 785.0 685 62.6
Phvul.001G113200 Phaseolus vulgaris HOM05D004225 ORTHO05D004728 6.6e-224 781.2 686 63.4
FAN23G2269 Fragaria x ananassa HOM05D004225 ORTHO05D004728 1.1e-223 780.4 683 63.5
CANSAT78G2348 Cannabis sativa HOM05D004225 ORTHO05D004728 5.6e-223 778.1 687 62.4
TWI32G0579 Tripterygium wilfordii HOM05D004225 ORTHO05D004728 1.6e-222 776.5 684 63.6
FvH4_1g28360 Fragaria vesca HOM05D004225 ORTHO05D004728 3.6e-222 775.4 686 63.1
Lalb_Chr14g0364611 Lupinus albus HOM05D004225 ORTHO05D004728 1.1e-221 773.9 684 61.8
TWI60G0668 Tripterygium wilfordii HOM05D004225 ORTHO05D004728 3.1e-221 772.3 682 63.0
Ciclev10018636m.g Citrus clementina HOM05D004225 ORTHO05D004728 4.0e-221 771.9 685 62.0
DCAR_020662 Daucus carota HOM05D004225 ORTHO05D004728 1.7e-219 766.5 705 61.3
PGR042G0202 Punica granatum HOM05D004225 ORTHO05D004728 7.8e-217 757.7 688 63.1
Lj2A418T70 Lonicera japonica HOM05D004225 ORTHO05D004728 3.9e-216 755.4 701 61.2
arahy.Tifrunner.gnm1.ann1.MX8T8B Arachis hypogaea HOM05D004225 ORTHO05D004728 1.9e-215 753.1 692 61.4
Medtr7g086050 Medicago truncatula HOM05D004225 ORTHO05D004728 1.6e-214 750.0 684 60.7
arahy.Tifrunner.gnm1.ann1.4I2AVL Arachis hypogaea HOM05D004225 ORTHO05D004728 1.8e-213 746.5 692 61.0
Lj1g0011347 Lotus japonicus HOM05D004225 ORTHO05D004728 6.8e-213 744.6 683 60.2
FAN19G2926 Fragaria x ananassa HOM05D000495 ORTHO05D004728 1.3e-211 740.3 679 61.6
Nitab4.5_0001355g0010 Nicotiana tabacum HOM05D004225 ORTHO05D004728 1.3e-211 740.3 682 59.7
Ca_08286_v3 Cicer arietinum L. HOM05D004225 ORTHO05D004728 2.2e-211 739.6 686 60.5
Nn2g14481 Nelumbo nucifera HOM05D004225 ORTHO05D004728 1.4e-210 736.9 638 63.6
MSTRG.5924 Avicennia marina HOM05D004225 ORTHO05D004728 5.4e-210 734.9 694 60.2
Sc01g0005150 Simmondsia chinensis HOM05D004225 ORTHO05D004728 2.1e-209 733.0 688 59.4
THA.LOC104820785 Tarenaya hassleriana HOM05D004225 ORTHO05D004728 3.0e-208 729.2 689 60.7
Peaxi162Scf00061g00247 Petunia axillaris HOM05D004225 ORTHO05D004728 3.9e-208 728.8 685 59.4
HanXRQChr14g0453121 Helianthus annuus HOM05D004225 ORTHO05D004728 6.2e-206 721.5 698 58.3
Eucgr.A02119 Eucalyptus grandis HOM05D004225 ORTHO05D004728 2.0e-204 716.5 684 59.4
Solyc01g056570.3 Solanum lycopersicum HOM05D004225 ORTHO05D004728 3.4e-204 715.7 690 58.4
Sp3g02770 Schrenkiella parvula HOM05D004225 ORTHO05D004728 4.4e-204 715.3 680 58.2
Cc06_g07240 Coffea canephora HOM05D004225 ORTHO05D004728 1.3e-203 713.8 683 58.7
Thhalv10019953m.g Eutrema salsugineum HOM05D004225 ORTHO05D004728 2.9e-203 712.6 688 57.6
PGSC0003DMG400005593 Solanum tuberosum HOM05D004225 ORTHO05D004728 4.2e-202 708.8 687 57.5
AT3G03790 Arabidopsis thaliana HOM05D004225 ORTHO05D004728 1.6e-201 706.8 684 57.7
FAN26G1663 Fragaria x ananassa HOM05D004225 ORTHO05D004728 3.0e-200 702.6 685 58.7
Sopen01g020500 Solanum pennellii HOM05D004225 ORTHO05D004728 3.0e-200 702.6 690 57.2
Lsat_1_v5_gn_2_103941 Lactuca sativa HOM05D004225 ORTHO05D004728 1.9e-199 699.9 703 57.2
SGA_v2.0_scaffold112G31648 Striga asiatica HOM05D004225 ORTHO05D004728 7.3e-199 698.0 699 58.8
EL10Ac5g11767 Beta vulgaris HOM05D004225 ORTHO05D004728 3.6e-198 695.7 684 56.7
CARHR077860 Cardamine hirsuta HOM05D004225 ORTHO05D004728 1.8e-197 693.3 682 57.6
Carub.0003s0296 Capsella rubella HOM05D004225 ORTHO05D004728 1.5e-196 690.3 686 56.9
Aa31LG5G14340 Aethionema arabicum HOM05D004225 ORTHO05D004728 2.6e-196 689.5 679 57.1
CAN.G170.116 Capsicum annuum HOM05D004225 ORTHO05D004728 2.2e-195 686.4 679 55.8
Hund10817 Selenicereus undatus HOM05D004225 ORTHO05D004728 3.8e-195 685.6 677 57.2
ClCG02G007850 Citrullus lanatus HOM05D004225 ORTHO05D004728 8.4e-195 684.5 692 57.7
AL3G13620 Arabidopsis lyrata HOM05D004225 ORTHO05D004728 3.2e-194 682.6 684 56.1
BraA05t23099Z Brassica rapa HOM05D004225 ORTHO05D004728 1.2e-193 680.6 687 57.2
BcaC05g29906 Brassica carinata HOM05D004225 ORTHO05D004728 2.7e-193 679.5 689 57.0
SalBow3G0054 Salvia bowleyana HOM05D004225 ORTHO05D004728 6.0e-193 678.3 742 54.9
BolC5t34981H Brassica oleracea HOM05D004225 ORTHO05D004728 1.5e-191 673.7 684 56.9
MELO3C024751.2 Cucumis melo HOM05D004225 ORTHO05D004728 4.3e-191 672.2 692 56.5
AUR62039726 Chenopodium quinoa HOM05D004225 ORTHO05D004728 5.6e-191 671.8 683 55.6
Sed0003216 Sechium edule HOM05D004225 ORTHO05D004728 1.3e-190 670.6 694 56.8
A05p43600 Brassica napus HOM05D004225 ORTHO05D004728 8.1e-190 667.9 692 55.9
Migut.J00760 Erythranthe guttata HOM05D004225 ORTHO05D004728 3.1e-189 666.0 699 55.7
Ah.12g059700 Amaranthus hybridus HOM05D004225 ORTHO05D004728 1.4e-186 657.1 684 55.0
CsaV3_2G035890 Cucumis sativus L. HOM05D004225 ORTHO05D004728 2.4e-186 656.4 691 55.6
C05p63190 Brassica napus HOM05D004225 ORTHO05D004728 3.2e-186 656.0 691 55.9
BcaC05g30250 Brassica carinata HOM05D004225 ORTHO05D004728 3.0e-184 649.4 695 54.7
HPP92_028052 Vanilla planifolia HOM05D004225 ORTHO05D004728 3.0e-184 649.4 684 56.4
AUR62036278 Chenopodium quinoa HOM05D004225 ORTHO05D004728 1.9e-183 646.7 684 53.8
Glyma.16G038900 Glycine max HOM05D004225 ORTHO05D004728 5.6e-183 645.2 611 59.9
ECA238G0084 Erigeron canadensis HOM05D004225 ORTHO05D004728 1.6e-182 643.7 688 54.5
Gohir.A13G165100 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.1e-181 639.4 678 53.8
Zm00001eb300770 Zea mays HOM05D004225 ORTHO05D004728 1.3e-174 617.5 697 51.6
Dinv11924 Davidia involucrata HOM05D004225 ORTHO05D004728 2.1e-174 616.7 421 75.1
ATR0697G085 Amborella trichopoda HOM05D004225 ORTHO05D004728 6.5e-171 605.1 711 51.8
unitig_27.g24735 Utricularia gibba HOM05D004225 ORTHO05D004728 1.4e-165 587.4 699 51.8
BcaC05g30283 Brassica carinata HOM05D004225 ORTHO05D004728 1.7e-158 563.9 687 50.5
Gohir.D13G168000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.0e-156 557.0 658 51.5
Gorai.013G194200 Gossypium raimondii HOM05D004225 ORTHO05D004728 5.1e-152 542.3 677 51.0
SHI13905 Sapria himalayana HOM05D004225 ORTHO05D004728 2.2e-150 537.0 697 49.1
TPR.G31024 Trifolium pratense HOM05D004225 ORTHO05D004728 4.4e-143 512.7 392 66.6
SEGI_41481 Sequoiadendron giganteum HOM05D004225 ORTHO05D004728 2.7e-140 503.4 749 43.9
Psat3g087720 Pisum sativum HOM05D004225 ORTHO05D004728 3.5e-132 476.5 394 64.0
Nitab4.5_0022463g0010 Nicotiana tabacum HOM05D004225 ORTHO05D004728 1.7e-118 431.0 452 56.4
CDE10G0988 Ceratophyllum demersum HOM05D004225 ORTHO05D004728 5.0e-115 419.5 394 56.9
Mapoly0082s0025 Marchantia polymorpha HOM05D004225 ORTHO05D004728 4.4e-111 406.4 759 38.1
Os07g0165200 Oryza sativa ssp. japonica HOM05D004225 ORTHO05D004728 7.1e-101 372.5 357 54.3
SMO367G1027 Selaginella moellendorffii HOM05D004225 ORTHO05D004728 1.4e-96 358.2 727 37.4
Pp3c8_24330 Physcomitrium patens HOM05D004225 ORTHO05D004728 2.7e-92 344.0 832 35.8
Psat3g087760 Pisum sativum HOM05D004225 ORTHO05D004728 1.6e-89 334.7 720 36.8
QL09p009056 Quercus lobata HOM05D004225 ORTHO05D004728 1.5e-87 328.2 204 78.4
Psat1g054520 Pisum sativum HOM05D004225 ORTHO05D004728 3.5e-84 317.0 228 68.0
Psat3g053440 Pisum sativum HOM05D004225 ORTHO05D004728 3.3e-82 310.5 230 66.5
AagrBONN_evm.TU.Sc2ySwM_228.1834 Anthoceros agrestis HOM05D004225 ORTHO05D004728 3.8e-78 297.0 738 32.9
Nitab4.5_0010528g0010 Nicotiana tabacum HOM05D004225 ORTHO05D004728 6.7e-75 286.2 212 64.6
Psat6g077720 Pisum sativum HOM05D001825 ORTHO05D004728 3.4e-71 273.9 279 54.5
TPR.G39963 Trifolium pratense HOM05D004225 ORTHO05D004728 6.2e-65 253.1 269 53.9
Oeu029553.1 Olea europaea HOM05D004225 ORTHO05D004728 1.4e-61 241.9 369 43.1
Psat2g062640 Pisum sativum HOM05D000250 ORTHO05D002477 2.4e-48 198.0 218 50.0
Psat3g053200 Pisum sativum HOM05D004225 ORTHO05D004728 2.6e-42 177.9 109 73.4
CBR_g37359 Chara braunii HOM05D000019 ORTHO05D000002 5.3e-40 170.2 698 28.1
Zm00001eb196450 Zea mays HOM05D004225 ORTHO05D004728 2.0e-39 168.3 117 65.0
Gohir.D11G104600 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.1e-29 136.0 77 79.2
Gorai.011G131900 Gossypium raimondii HOM05D004225 ORTHO05D004728 1.1e-29 136.0 81 77.8
Gorai.N008400 Gossypium raimondii HOM05D004225 ORTHO05D004728 1.1e-29 136.0 77 79.2
Gorai.007G111900 Gossypium raimondii HOM05D004225 ORTHO05D004728 3.2e-29 134.4 77 77.9
Gohir.A11G205501 Gossypium hirsutum HOM05D000558 ORTHO05D001857 4.2e-29 134.0 125 60.0
Gorai.006G065700 Gossypium raimondii HOM05D004225 ORTHO05D004728 9.4e-29 132.9 77 76.6
Gorai.012G030100 Gossypium raimondii HOM05D004225 ORTHO05D004728 9.4e-29 132.9 77 76.6
Gorai.008G213700 Gossypium raimondii HOM05D004225 ORTHO05D004728 1.6e-28 132.1 77 76.6
Gohir.A04G063985 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.1e-28 131.7 81 74.1
Gohir.A11G197325 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.1e-28 131.7 81 74.1
Gohir.D03G090000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.7e-28 131.3 78 78.2
Gorai.005G091800 Gossypium raimondii HOM05D004225 ORTHO05D004728 4.7e-28 130.6 77 76.6
Gohir.D02G099701 Gossypium hirsutum HOM05D004225 ORTHO05D004728 8.0e-28 129.8 78 76.9
Gohir.D02G100000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 8.0e-28 129.8 78 76.9
Gohir.D02G100001 Gossypium hirsutum HOM05D004225 ORTHO05D004728 8.0e-28 129.8 78 76.9
Gorai.013G083400 Gossypium raimondii HOM05D004225 ORTHO05D004728 8.0e-28 129.8 78 76.9
Gohir.D10G031000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.0e-27 129.4 81 72.8
Gohir.D09G057401 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.8e-27 128.6 77 74.0
Gohir.A04G120200 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.3e-27 128.3 81 72.8
Gohir.A13G182600 Gossypium hirsutum HOM05D004225 ORTHO05D004728 6.7e-27 126.7 77 74.0
Gohir.D13G104300 Gossypium hirsutum HOM05D004225 ORTHO05D004728 6.7e-27 126.7 77 74.0
Gohir.D10G200650 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.2e-26 125.9 79 72.2
Gohir.D03G046700 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.6e-26 124.8 77 72.7
Gohir.D13G171500 Gossypium hirsutum HOM05D004225 ORTHO05D004728 7.5e-26 123.2 77 72.7
Gohir.D09G044750 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.1e-24 117.9 66 78.8
Psat0s5023g0080 Pisum sativum HOM05D004225 ORTHO05D004728 6.5e-22 110.2 89 66.3
Psat5g115680 Pisum sativum HOM05D004225 ORTHO05D004728 6.5e-22 110.2 89 66.3
Gohir.D10G193750 Gossypium hirsutum HOM05D004225 ORTHO05D004728 8.3e-17 93.2 52 78.8
Gorai.005G145400 Gossypium raimondii HOM05D004225 ORTHO05D004728 1.1e-16 92.8 52 78.8
Gohir.D07G139500 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.4e-16 91.7 52 76.9
Gohir.D08G141700 Gossypium hirsutum HOM05D004225 ORTHO05D004728 4.1e-16 90.9 52 76.9
Gorai.010G050700 Gossypium raimondii HOM05D004225 ORTHO05D004728 1.2e-15 89.4 50 78.0
Gohir.D08G082500 Gossypium hirsutum HOM05D001780 ORTHO05D004728 1.7e-14 85.5 51 74.5
Gohir.D13G173925 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.7e-14 85.5 51 74.5
MCO08G113 Micromonas commoda HOM05D004225 ORTHO05D004728 1.5e-10 72.4 271 28.0
Gorai.007G248400 Gossypium raimondii HOM05D006386 ORTHO05D007575 3.7e-09 67.8 43 65.1


User provided reference genes

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