Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.4e-190 668.7 347 100.0
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 3.9e-156 555.1 342 86.0
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 2.4e-137 492.7 345 77.4
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 8.5e-135 484.2 347 75.8
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 2.3e-132 476.1 344 76.2
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.3e-130 470.3 344 73.3
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 1.5e-128 463.4 365 71.5
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 2.0e-128 463.0 352 73.3
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.9e-127 459.1 342 72.5
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 2.9e-127 459.1 351 74.6
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 6.5e-127 458.0 349 73.4
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 3.2e-126 455.7 373 67.3
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 8.0e-125 451.1 365 70.4
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.8e-124 449.9 358 70.1
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.5e-123 446.8 335 72.8
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.5e-123 446.8 335 72.8
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 2.0e-123 446.4 344 71.5
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 2.6e-123 446.0 356 70.8
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.7e-123 444.1 335 72.2
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 1.3e-122 443.7 345 69.9
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.8e-121 439.9 345 69.6
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 4.1e-121 438.7 376 66.5
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 1.7e-119 433.3 348 69.8
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 2.2e-119 433.0 370 67.6
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 3.8e-119 432.2 359 69.1
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.8e-116 423.3 334 71.9
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 4.0e-116 422.2 379 64.9
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.2e-115 420.6 314 72.3
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 2.0e-115 419.9 359 67.1
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 9.7e-115 417.5 346 69.4
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 2.8e-114 416.0 421 58.7
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 2.4e-113 412.9 362 66.9
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.1e-113 412.5 364 66.5
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 9.1e-113 411.0 364 66.2
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 1.2e-112 410.6 363 66.7
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 4.5e-112 408.7 354 66.7
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.3e-111 407.1 348 67.2
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 2.5e-110 402.9 360 66.7
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.3e-108 396.4 288 72.9
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 3.0e-108 396.0 374 63.1
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 3.0e-108 396.0 364 64.6
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.0e-108 396.0 364 64.6
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 3.0e-108 396.0 384 61.5
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 6.8e-108 394.8 357 65.8
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 8.8e-108 394.4 346 63.9
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 8.8e-108 394.4 353 64.6
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.2e-107 394.0 360 63.1
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 1.2e-107 394.0 384 59.4
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 2.0e-107 393.3 365 64.4
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 3.5e-104 382.5 458 52.2
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 4.5e-104 382.1 385 57.7
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 1.3e-103 380.6 404 57.4
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 1.3e-103 380.6 364 62.6
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 2.3e-103 379.8 391 59.1
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 2.3e-103 379.8 381 58.8
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 2.9e-103 379.4 403 57.8
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 8.6e-103 377.9 361 63.7
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 8.6e-103 377.9 355 66.2
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 1.1e-102 377.5 356 60.7
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 1.9e-102 376.7 392 59.2
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 2.5e-102 376.3 406 56.7
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 6.1e-101 371.7 338 63.6
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.0e-100 370.9 366 60.4
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 5.7e-99 365.2 298 67.1
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 2.8e-98 362.8 356 59.0
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 3.7e-98 362.5 364 61.8
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 8.3e-98 361.3 316 64.2
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.1e-97 360.9 298 66.4
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 2.4e-97 359.8 377 57.6
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 2.4e-97 359.8 453 50.1
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 7.8e-96 354.8 411 55.5
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 6.6e-95 351.7 419 56.1
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 1.9e-94 350.1 378 56.3
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.5e-94 349.7 352 60.8
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 3.3e-94 349.4 341 62.8
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 5.6e-94 348.6 360 59.4
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 4.7e-93 345.5 422 54.5
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 1.0e-92 344.4 359 57.7
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 1.5e-91 340.5 317 63.4
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.7e-90 335.9 373 57.4
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 3.5e-88 329.3 421 50.4
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.0e-87 327.8 361 54.6
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 1.1e-86 324.3 448 49.1
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.5e-86 323.2 344 54.7
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.1e-85 320.1 370 56.5
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 4.7e-85 318.9 447 48.5
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 1.1e-84 317.8 344 55.5
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.1e-84 317.8 373 56.3
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 1.4e-84 317.4 341 59.5
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 1.2e-83 314.3 444 48.6
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 2.0e-83 313.5 335 59.1
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 9.8e-83 311.2 383 52.2
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 2.9e-82 309.7 363 54.8
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.9e-82 309.7 315 57.8
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 2.9e-82 309.7 357 57.7
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 1.4e-81 307.4 446 47.8
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 7.1e-81 305.1 439 46.2
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 7.1e-81 305.1 396 51.8
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 2.7e-80 303.1 477 44.7
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 1.3e-79 300.8 456 45.8
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 3.3e-78 296.2 472 44.7
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 3.3e-78 296.2 353 54.7
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 9.5e-78 294.7 448 44.9
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 9.5e-78 294.7 461 44.3
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 1.2e-77 294.3 449 45.0
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 5.2e-76 288.9 443 45.8
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 5.2e-76 288.9 443 45.8
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 9.9e-75 284.6 409 47.7
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.4e-73 280.0 329 55.6
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 7.1e-73 278.5 395 48.6
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 1.2e-72 277.7 340 51.5
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 3.9e-71 272.7 469 42.2
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 1.9e-70 270.4 332 52.1
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 7.3e-70 268.5 260 61.5
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 3.6e-69 266.2 411 47.0
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 6.2e-69 265.4 420 43.3
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 2.0e-67 260.4 311 51.1
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 2.6e-67 260.0 250 63.2
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 3.3e-62 243.0 386 44.8
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 3.6e-61 239.6 313 49.5
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 3.5e-56 223.0 341 46.3
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.0e-55 221.5 303 50.8
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 1.7e-55 220.7 263 52.1
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 1.8e-52 210.7 377 44.3
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 6.7e-47 192.2 353 43.1
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 2.1e-45 187.2 362 42.5
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.4e-44 184.5 130 74.6
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 2.0e-43 180.6 323 42.4
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 4.3e-38 162.9 333 40.5
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 4.2e-33 146.4 160 55.6
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 5.0e-26 122.9 76 82.9
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 3.2e-25 120.2 79 77.2
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 4.6e-24 116.3 218 42.2
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.1e-20 105.1 357 31.1
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.1e-20 102.1 68 72.1
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 9.1e-20 102.1 74 64.9
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 2.0e-19 100.9 67 73.1
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 3.4e-19 100.1 67 73.1
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 1.0e-18 98.6 343 33.8
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 3.8e-18 96.7 58 77.6
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 5.5e-17 92.8 83 65.1
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.6e-16 91.3 59 72.9
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 2.1e-16 90.9 199 42.2
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 2.3e-15 87.4 81 59.3
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 6.7e-15 85.9 100 51.0
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 2.6e-14 84.0 162 40.7
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.7e-08 63.2 51 60.8
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.7e-08 63.2 51 60.8
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.7e-08 63.2 51 60.8
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.7e-08 63.2 51 60.8
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 6.1e-08 62.8 51 60.8
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 6.1e-08 62.8 51 60.8
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 1.0e-07 62.0 234 31.6
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.0e-07 62.0 51 58.8
Actinidia19788 Actinidia chinensis HOM05D004847 ORTHO05D005856 8.8e-07 58.9 36 75.0
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 1.5e-06 58.2 101 41.6
Gohir.D05G046500 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.0e-06 57.8 51 56.9


User provided reference genes

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