Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.0e-261 906.4 512 100.0
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 5.1e-152 542.0 543 58.9
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 5.1e-152 542.0 523 63.7
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 3.4e-148 529.3 482 62.4
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 6.4e-131 471.9 464 59.7
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 4.2e-130 469.2 477 57.7
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 4.6e-129 465.7 464 57.8
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 7.9e-129 464.9 464 58.6
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 8.7e-128 461.5 469 56.5
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 1.6e-126 457.2 461 57.9
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 8.1e-126 454.9 465 56.3
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 6.9e-125 451.8 464 56.0
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 7.6e-124 448.4 483 56.1
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.1e-119 434.5 470 55.5
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.3e-119 433.0 469 54.2
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 7.4e-119 431.8 473 53.9
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 4.8e-118 429.1 497 55.1
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 6.2e-118 428.7 468 55.6
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 8.1e-118 428.3 469 53.1
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.1e-117 426.4 469 53.5
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 4.0e-117 426.0 464 53.7
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 1.2e-116 424.5 536 50.9
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 2.0e-116 423.7 472 56.6
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 5.8e-116 422.2 460 53.7
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 2.2e-115 420.2 466 53.9
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 3.8e-115 419.5 467 52.5
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.9e-115 419.1 481 55.7
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 4.2e-114 416.0 474 52.5
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 3.5e-113 412.9 473 52.2
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.1e-112 409.1 475 54.9
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.6e-110 404.1 463 54.9
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 2.8e-110 403.3 516 48.1
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 1.8e-109 400.6 477 50.7
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 9.0e-109 398.3 462 52.4
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 7.6e-108 395.2 460 51.3
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 1.3e-107 394.4 400 57.5
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 1.3e-107 394.4 377 57.3
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 1.3e-107 394.4 481 50.1
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 6.5e-107 392.1 464 50.4
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 8.5e-107 391.7 502 49.4
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 4.2e-106 389.4 474 49.8
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.6e-105 387.5 452 55.1
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 3.6e-105 386.3 459 52.7
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 6.1e-105 385.6 459 49.0
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 1.0e-104 384.8 461 51.0
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 1.9e-103 380.6 453 54.5
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.7e-103 379.0 453 54.3
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 7.4e-103 378.6 475 49.1
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 9.7e-103 378.3 461 49.2
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 2.8e-102 376.7 458 50.4
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 3.7e-102 376.3 461 50.5
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 8.2e-102 375.2 461 48.2
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 1.4e-101 374.4 364 54.7
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 1.8e-101 374.0 367 56.9
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 4.1e-101 372.9 464 50.6
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 5.3e-101 372.5 459 49.5
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 5.3e-101 372.5 461 50.1
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 1.3e-99 367.9 473 48.4
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 1.3e-99 367.9 462 47.4
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 1.7e-99 367.5 517 43.7
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.2e-99 367.1 468 48.1
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 2.9e-99 366.7 366 54.1
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 2.9e-99 366.7 359 58.8
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 3.2e-98 363.2 465 46.7
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 4.2e-98 362.8 464 47.2
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 6.1e-97 359.0 401 52.9
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 6.1e-97 359.0 473 47.4
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.4e-96 357.8 460 47.0
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 3.0e-96 356.7 394 53.6
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 3.9e-96 356.3 463 47.7
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 5.1e-96 355.9 463 47.9
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.1e-95 354.8 460 46.3
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.0e-95 354.0 460 46.5
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 7.4e-95 352.1 461 49.0
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.7e-94 349.7 372 53.0
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.1e-93 348.2 367 52.9
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 1.4e-93 347.8 465 47.5
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 1.2e-92 344.7 469 45.8
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 3.4e-92 343.2 466 46.1
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 7.7e-92 342.0 469 43.9
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.3e-91 341.3 470 45.3
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 3.2e-90 336.7 475 45.7
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 4.2e-90 336.3 470 44.5
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 5.5e-90 335.9 461 45.8
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 5.5e-90 335.9 461 45.8
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 5.5e-90 335.9 461 45.8
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.1e-89 334.0 474 45.8
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 3.6e-89 333.2 465 46.0
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 6.1e-89 332.4 472 46.4
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 6.1e-89 332.4 452 46.2
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 3.0e-88 330.1 476 43.9
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 5.2e-88 329.3 457 46.0
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 2.0e-87 327.4 482 44.4
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 1.3e-86 324.7 305 54.4
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 8.2e-86 322.0 469 43.1
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.1e-85 321.6 362 48.6
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 2.4e-85 320.5 351 52.4
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 1.6e-84 317.8 364 50.3
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 2.0e-84 317.4 363 50.1
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.3e-83 314.7 460 45.0
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 3.8e-83 313.2 471 43.7
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 6.5e-83 312.4 368 49.5
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 1.9e-82 310.8 422 46.9
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 1.2e-81 308.1 462 44.8
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 3.6e-81 306.6 457 43.3
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 4.7e-81 306.2 462 44.8
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 4.7e-81 306.2 367 49.0
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 1.8e-80 304.3 486 42.6
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 8.8e-80 302.0 408 43.9
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 8.8e-80 302.0 443 42.4
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 2.0e-79 300.8 432 44.4
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 5.7e-79 299.3 466 43.6
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 4.8e-78 296.2 462 44.8
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 4.8e-78 296.2 462 44.8
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 8.2e-78 295.4 399 46.9
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 8.2e-78 295.4 399 46.9
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 8.2e-78 295.4 399 46.9
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 9.1e-77 292.0 385 46.5
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 1.2e-76 291.6 464 40.9
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 2.9e-75 287.0 467 43.5
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 2.9e-75 287.0 365 44.9
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 6.5e-75 285.8 366 46.4
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.1e-74 285.0 364 46.4
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 5.5e-74 282.7 348 47.7
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 9.4e-74 282.0 405 42.2
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 9.8e-71 271.9 456 40.8
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.8e-70 269.6 390 41.5
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 5.4e-69 266.2 338 47.3
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.3e-67 261.5 408 41.2
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 5.0e-67 259.6 318 48.4
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.1e-66 258.5 394 42.1
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.5e-66 258.1 548 38.3
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.5e-66 258.1 548 38.3
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 4.7e-65 253.1 400 40.8
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.8e-64 251.1 463 38.2
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 3.0e-64 250.4 332 44.6
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 5.2e-64 249.6 331 45.0
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 7.5e-63 245.7 219 60.7
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 1.1e-58 231.9 297 43.8
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.5e-55 221.5 298 46.3
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 8.3e-54 215.7 511 32.9
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.0e-39 167.9 392 32.7
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.1e-37 160.2 412 30.1
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.2e-36 158.7 378 30.4
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.6e-36 158.3 182 48.4
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.7e-36 157.5 182 48.4
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.8e-36 156.0 399 30.8
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 2.3e-35 154.5 346 34.4
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.1e-35 153.3 557 26.2
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 8.6e-35 152.5 508 27.6
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 9.5e-34 149.1 574 27.9
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 1.8e-32 144.8 562 26.3
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 4.4e-31 140.2 124 58.1
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.9e-29 134.8 310 32.9
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.9e-27 127.1 169 49.1
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.9e-27 127.1 211 36.0
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.2e-23 115.5 189 42.9
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 3.0e-19 100.9 149 43.6
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 1.6e-17 95.1 126 44.4
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.8e-16 91.7 90 53.3
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 7.4e-10 69.7 53 69.8
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.7e-06 58.5 52 44.2


User provided reference genes

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