Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0142 Trochodendron aralioides HOM05D001647 ORTHO05D001191 6.3e-52 207.2 110 100.0
Nn7g38114 Nelumbo nucifera HOM05D000793 ORTHO05D001191 1.7e-33 146.0 107 71.0
Prupe.8G188700 Prunus persica HOM05D000793 ORTHO05D001191 2.1e-31 139.0 103 68.9
GSVIVG01023268001 Vitis vinifera HOM05D000793 ORTHO05D001191 2.3e-30 135.6 110 67.3
Atru.chr6.3532 Acer truncatum HOM05D001647 ORTHO05D001191 4.0e-30 134.8 103 67.0
Dinv28803 Davidia involucrata HOM05D001647 ORTHO05D001191 5.2e-30 134.4 111 63.1
Hma1.2p1_0161F.1_g071530 Hydrangea macrophylla HOM05D000793 ORTHO05D001191 6.8e-30 134.0 110 67.3
MD05G1156500 Malus domestica HOM05D000793 ORTHO05D001191 2.0e-29 132.5 110 62.7
Duzib138G0715 Durio zibethinus HOM05D001647 ORTHO05D001191 7.5e-29 130.6 105 68.6
MD10G1150100 Malus domestica HOM05D001647 ORTHO05D001191 2.2e-28 129.0 110 63.6
QL05p019466 Quercus lobata HOM05D001647 ORTHO05D001191 3.7e-28 128.3 107 64.5
QL09p047372 Quercus lobata HOM05D001647 ORTHO05D001191 3.7e-28 128.3 107 64.5
RcHm_v2.0_Chr6g0282591 Rosa chinensis HOM05D000793 ORTHO05D001191 4.9e-28 127.9 106 63.2
Aqoxy5G00016 Aquilegia oxysepala HOM05D000793 ORTHO05D001191 4.1e-27 124.8 101 63.4
DCAR_004772 Daucus carota HOM05D001647 ORTHO05D001191 1.6e-26 122.9 111 64.9
FAN27G2058 Fragaria x ananassa HOM05D000793 ORTHO05D001191 1.6e-26 122.9 105 61.0
Haze_03579 Corylus avellana HOM05D001647 ORTHO05D001191 2.1e-26 122.5 107 64.5
FvH4_2g17610 Fragaria vesca HOM05D000793 ORTHO05D001191 4.6e-26 121.3 105 61.0
FAN24G3291 Fragaria x ananassa HOM05D000793 ORTHO05D001191 4.6e-26 121.3 105 61.0
Lj1A103T30 Lonicera japonica HOM05D001647 ORTHO05D001191 4.6e-26 121.3 110 63.6
CSS0031246 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D001191 6.0e-26 120.9 108 63.0
FAN27G3486 Fragaria x ananassa HOM05D000793 ORTHO05D001191 7.8e-26 120.6 105 60.0
Potri.014G176900 Populus trichocarpa HOM05D000793 ORTHO05D001191 7.8e-26 120.6 113 59.3
FAN15G3268 Fragaria x ananassa HOM05D000793 ORTHO05D001191 1.0e-25 120.2 105 60.0
CAN.G874.36 Capsicum annuum HOM05D001647 ORTHO05D001191 2.3e-25 119.0 111 58.6
Rhsim13G0053800 Rhododendron simsii HOM05D000793 ORTHO05D001191 2.3e-25 119.0 109 59.6
COL.COLO4_08155 Corchorus olitorius HOM05D001647 ORTHO05D001191 5.1e-25 117.9 105 63.8
Peaxi162Scf01242g00039 Petunia axillaris HOM05D001647 ORTHO05D001191 5.1e-25 117.9 111 58.6
Solyc06g082990.4 Solanum lycopersicum HOM05D001647 ORTHO05D001191 5.1e-25 117.9 111 58.6
Peaxi162Scf00672g00011 Petunia axillaris HOM05D001647 ORTHO05D001191 1.1e-24 116.7 111 57.7
Cpa.g.sc8.55 Carica papaya HOM05D000793 ORTHO05D001191 1.5e-24 116.3 109 57.8
TWI36G0803 Tripterygium wilfordii HOM05D001647 ORTHO05D001191 1.9e-24 115.9 105 62.9
PGSC0003DMG401027685 Solanum tuberosum HOM05D001647 ORTHO05D001191 2.5e-24 115.5 111 56.8
Sopen06g034380 Solanum pennellii HOM05D001647 ORTHO05D001191 5.6e-24 114.4 111 56.8
vmacro02828 Vaccinium macrocarpon HOM05D000793 ORTHO05D001191 5.6e-24 114.4 109 56.9
Ciclev10015926m.g Citrus clementina HOM05D000793 ORTHO05D001191 9.5e-24 113.6 107 58.9
Migut.N00672 Erythranthe guttata HOM05D000793 ORTHO05D001191 9.5e-24 113.6 102 57.8
CiPaw.13G058100 Carya illinoinensis HOM05D000793 ORTHO05D001191 2.1e-23 112.5 99 60.6
ClCG08G010700 Citrullus lanatus HOM05D001647 ORTHO05D001191 2.8e-23 112.1 103 57.3
Nitab4.5_0006002g0030 Nicotiana tabacum HOM05D001647 ORTHO05D001191 1.1e-22 110.2 109 56.9
SalBow3G2773 Salvia bowleyana HOM05D001647 ORTHO05D001191 1.1e-22 110.2 106 57.5
Nitab4.5_0000038g0290 Nicotiana tabacum HOM05D001647 ORTHO05D001191 1.8e-22 109.4 111 57.7
Sed0004399 Sechium edule HOM05D000793 ORTHO05D001191 1.8e-22 109.4 106 56.6
Cc01_g16000 Coffea canephora HOM05D001647 ORTHO05D001191 4.0e-22 108.2 103 57.3
Sabra14G0135200 Salix brachista HOM05D001647 ORTHO05D001191 6.8e-22 107.5 113 54.0
Sc05g0001660 Simmondsia chinensis HOM05D000793 ORTHO05D001191 8.9e-22 107.1 110 57.3
MELO3C011391.2 Cucumis melo HOM05D000793 ORTHO05D001191 1.5e-21 106.3 104 57.7
CANSAT01G2191 Cannabis sativa HOM05D001647 ORTHO05D001191 4.4e-21 104.8 98 54.1
Lalb_Chr06g0173701 Lupinus albus HOM05D000793 ORTHO05D001191 9.9e-21 103.6 107 54.2
Nitab4.5_0001348g0040 Nicotiana tabacum HOM05D000793 ORTHO05D001191 1.7e-20 102.8 110 53.6
Psat6g093440 Pisum sativum HOM05D001647 ORTHO05D001191 2.2e-20 102.4 102 55.9
SalBow4G1893 Salvia bowleyana HOM05D001647 ORTHO05D001191 2.2e-20 102.4 108 57.4
Medtr1g050760 Medicago truncatula HOM05D001647 ORTHO05D001191 2.9e-20 102.1 103 56.3
PSO210G5293 Papaver somniferum HOM05D000793 ORTHO05D001191 3.8e-20 101.7 102 61.8
Nitab4.5_0007144g0050 Nicotiana tabacum HOM05D000793 ORTHO05D001191 8.4e-20 100.5 102 55.9
THA.LOC104804707 Tarenaya hassleriana HOM05D000793 ORTHO05D001191 8.4e-20 100.5 105 56.2
VMungo0720G0496 Vigna mungo HOM05D000793 ORTHO05D001191 8.4e-20 100.5 110 50.9
PSO832G0377 Papaver somniferum HOM05D000793 ORTHO05D001191 1.1e-19 100.1 106 58.5
arahy.Tifrunner.gnm1.ann1.0IM15M Arachis hypogaea HOM05D000793 ORTHO05D001191 1.9e-19 99.4 107 55.1
arahy.Tifrunner.gnm1.ann1.WMB7RK Arachis hypogaea HOM05D000793 ORTHO05D001191 1.9e-19 99.4 107 55.1
Manes.13G055400 Manihot esculenta HOM05D000793 ORTHO05D001191 2.4e-19 99.0 105 53.3
EL10Ac9g21220 Beta vulgaris HOM05D001647 ORTHO05D001191 3.2e-19 98.6 102 55.9
Glyma.02G003500 Glycine max HOM05D000793 ORTHO05D001191 3.2e-19 98.6 107 52.3
MSTRG.17965 Avicennia marina HOM05D000793 ORTHO05D001191 4.1e-19 98.2 110 51.8
TPR.G7602 Trifolium pratense HOM05D001647 ORTHO05D001191 5.4e-19 97.8 103 53.4
Zm00001eb078780 Zea mays HOM05D000793 ORTHO05D001191 7.1e-19 97.4 100 49.0
Ca_11741_v3 Cicer arietinum L. HOM05D001647 ORTHO05D001191 1.2e-18 96.7 103 54.4
AUR62012901 Chenopodium quinoa HOM05D000793 ORTHO05D001191 2.1e-18 95.9 102 55.9
Os04g0492900 Oryza sativa ssp. japonica HOM05D000793 ORTHO05D001191 3.5e-18 95.1 99 51.5
Eucgr.K02086 Eucalyptus grandis HOM05D000793 ORTHO05D001191 4.6e-18 94.7 107 48.6
Gohir.D11G149700 Gossypium hirsutum HOM05D001647 ORTHO05D001191 7.8e-18 94.0 106 51.9
Gorai.007G160600 Gossypium raimondii HOM05D000793 ORTHO05D001191 7.8e-18 94.0 106 51.9
Lj6g0000534 Lotus japonicus HOM05D000793 ORTHO05D001191 1.0e-17 93.6 103 52.4
ECA248G3096 Erigeron canadensis HOM05D001647 ORTHO05D001191 1.3e-17 93.2 108 52.8
Glyma.02G173200 Glycine max HOM05D000793 ORTHO05D001191 1.7e-17 92.8 107 49.5
Phvul.007G279800 Phaseolus vulgaris HOM05D000793 ORTHO05D001191 1.7e-17 92.8 107 51.4
Nn7g36623 Nelumbo nucifera HOM05D000793 ORTHO05D001191 8.7e-17 90.5 66 68.2
Hund09477 Selenicereus undatus HOM05D000793 ORTHO05D001191 2.5e-16 89.0 101 52.5
Ah.01g007510 Amaranthus hybridus HOM05D001647 ORTHO05D001191 5.6e-16 87.8 100 48.0
Gohir.A11G143300 Gossypium hirsutum HOM05D000793 ORTHO05D001191 9.6e-16 87.0 106 48.1
Lsat_1_v5_gn_5_176681 Lactuca sativa HOM05D001647 ORTHO05D001191 1.6e-15 86.3 98 54.1
HanXRQChr01g0025091 Helianthus annuus HOM05D001647 ORTHO05D001191 2.8e-15 85.5 106 53.8
Oeu051509.1 Olea europaea HOM05D000793 ORTHO05D001191 6.2e-15 84.3 110 46.4
CsaV3_6G035830 Cucumis sativus L. HOM05D000793 ORTHO05D001191 1.8e-14 82.8 73 57.5
ATR0824G169 Amborella trichopoda HOM05D000793 ORTHO05D001191 3.1e-14 82.0 102 51.0
Thecc.01G209400 Theobroma cacao HOM05D001647 ORTHO05D001191 3.1e-14 82.0 108 46.3
CDE08G0068 Ceratophyllum demersum HOM05D000793 ORTHO05D001191 7.6e-13 77.4 104 52.9
AUR62011726 Chenopodium quinoa HOM05D000300 ORTHO05D009414 2.9e-12 75.5 100 48.0
BcaB06g26746 Brassica carinata HOM05D001647 ORTHO05D001191 8.4e-12 73.9 97 53.6
C07p10580 Brassica napus HOM05D000793 ORTHO05D001191 1.9e-11 72.8 93 50.5
A07p06950 Brassica napus HOM05D001647 ORTHO05D001191 2.4e-11 72.4 106 48.1
BraA07t28485Z Brassica rapa HOM05D001647 ORTHO05D001191 2.4e-11 72.4 106 48.1
SEGI_35092 Sequoiadendron giganteum HOM05D000793 ORTHO05D001191 2.4e-11 72.4 103 45.6
BcaC06g35813 Brassica carinata HOM05D000793 ORTHO05D001191 4.2e-11 71.6 98 50.0
BolC7t41523H Brassica oleracea HOM05D000793 ORTHO05D001191 4.2e-11 71.6 98 50.0
CDE08G0492 Ceratophyllum demersum HOM05D000793 ORTHO05D001191 4.2e-11 71.6 95 44.2
Carub.0003s2576 Capsella rubella HOM05D000793 ORTHO05D001191 5.4e-11 71.2 96 50.0
AT3G25440 Arabidopsis thaliana HOM05D001647 ORTHO05D001191 2.7e-10 68.9 105 46.7
Sp3g22980 Schrenkiella parvula HOM05D001647 ORTHO05D001191 3.5e-10 68.6 105 45.7
Thhalv10002612m.g Eutrema salsugineum HOM05D000793 ORTHO05D001191 1.3e-09 66.6 108 46.3
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 1.5e-08 63.2 100 43.0
unitig_61.g26347 Utricularia gibba HOM05D001647 ORTHO05D001191 3.3e-08 62.0 110 42.7
Aa31sc53G80 Aethionema arabicum HOM05D001647 ORTHO05D001191 5.6e-08 61.2 104 43.3
CARHR101740 Cardamine hirsuta HOM05D000793 ORTHO05D001191 7.3e-08 60.8 87 48.3
AL3G41310 Arabidopsis lyrata HOM05D000793 ORTHO05D001191 1.4e-06 56.6 74 47.3


User provided reference genes

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