Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 0.0e+00 1106.3 608 100.0
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 9.8e-195 684.1 607 66.2
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 8.3e-194 681.0 602 66.1
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.9e-151 539.3 504 63.7
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.4e-137 493.4 608 53.0
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 2.8e-133 479.9 607 50.7
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 1.9e-118 430.6 696 44.8
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 3.1e-116 423.3 650 47.5
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 1.3e-114 417.9 626 47.3
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.7e-114 417.5 690 43.9
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 1.0e-111 408.3 686 43.3
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 2.3e-111 407.1 677 46.1
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 9.1e-108 395.2 648 45.5
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 2.2e-106 390.6 694 42.8
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 8.5e-106 388.7 647 44.4
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 6.1e-104 382.5 674 43.3
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 1.0e-103 381.7 641 43.7
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 3.9e-103 379.8 811 38.8
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 1.7e-101 374.4 608 45.7
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.4e-100 371.3 642 44.2
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 4.5e-99 366.3 689 43.3
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 5.9e-99 365.9 693 40.8
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.7e-98 364.4 638 42.3
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.9e-98 363.6 638 43.1
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 5.0e-98 362.8 633 44.2
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 1.0e-95 355.1 616 42.5
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 1.5e-94 351.3 605 45.5
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 3.3e-94 350.1 619 41.0
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.4e-94 349.7 617 44.1
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 5.7e-94 349.4 619 43.1
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 5.7e-94 349.4 640 42.5
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.3e-93 348.2 615 42.9
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 1.7e-93 347.8 636 42.1
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 1.7e-93 347.8 629 42.3
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.7e-93 347.8 697 41.2
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 2.2e-93 347.4 625 43.7
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 3.7e-93 346.7 628 42.4
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 4.8e-93 346.3 638 41.5
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 2.4e-92 344.0 645 41.7
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 1.2e-91 341.7 639 41.6
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 1.6e-91 341.3 604 45.4
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 2.0e-91 340.9 343 60.3
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 2.7e-91 340.5 633 40.1
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 2.7e-91 340.5 661 41.1
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.0e-90 338.6 625 42.6
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 2.2e-90 337.4 619 42.5
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 2.2e-90 337.4 646 41.2
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 3.8e-90 336.7 677 39.3
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 3.2e-89 333.6 640 40.6
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 4.2e-89 333.2 585 43.2
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 2.7e-88 330.5 676 39.2
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 3.6e-88 330.1 695 38.4
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 8.0e-88 328.9 603 43.8
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 2.3e-87 327.4 627 40.5
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 4.0e-87 326.6 625 41.1
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 5.2e-87 326.2 387 54.5
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 6.8e-87 325.9 639 41.2
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 8.8e-87 325.5 640 39.1
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 2.6e-86 323.9 649 39.1
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 2.2e-85 320.9 630 41.1
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 4.8e-85 319.7 667 40.0
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 4.8e-85 319.7 678 38.8
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 1.8e-84 317.8 645 38.8
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 7.7e-83 312.4 363 55.9
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 2.5e-81 307.4 649 39.8
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 4.2e-81 306.6 654 39.0
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 4.2e-81 306.6 475 45.9
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 5.5e-81 306.2 631 39.9
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 4.7e-80 303.1 627 38.8
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 6.8e-79 299.3 603 39.3
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 7.5e-78 295.8 641 39.2
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 7.5e-78 295.8 624 41.0
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.7e-77 294.7 763 34.3
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 4.9e-77 293.1 609 39.6
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.4e-76 291.6 625 38.1
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.8e-76 291.2 292 62.3
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 9.2e-76 288.9 621 39.5
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 9.2e-76 288.9 626 37.7
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 1.2e-75 288.5 620 37.7
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 3.5e-75 287.0 635 38.4
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 3.5e-75 287.0 627 37.6
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 4.5e-75 286.6 610 40.2
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 5.9e-75 286.2 609 37.6
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 5.9e-75 286.2 627 39.4
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 5.9e-75 286.2 487 46.4
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.3e-74 285.0 661 36.8
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 2.3e-74 284.3 656 36.7
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 2.9e-74 283.9 612 38.1
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 5.0e-74 283.1 639 37.6
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 5.0e-74 283.1 650 35.5
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 6.6e-74 282.7 597 40.5
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.5e-73 280.8 619 37.6
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 1.2e-72 278.5 620 38.9
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.2e-72 278.5 628 37.4
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.6e-72 278.1 273 62.6
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 3.6e-72 276.9 607 37.2
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 1.0e-71 275.4 480 43.8
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.8e-71 274.6 612 37.3
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 6.8e-71 272.7 607 37.4
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 1.5e-70 271.6 607 37.1
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 4.4e-70 270.0 607 36.6
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 4.4e-70 270.0 632 36.9
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 5.8e-70 269.6 612 36.9
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 7.5e-70 269.2 669 35.9
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 3.7e-69 266.9 666 34.7
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 8.3e-69 265.8 629 35.5
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 8.3e-69 265.8 480 42.3
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 9.2e-68 262.3 631 36.0
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 9.2e-68 262.3 636 37.3
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 2.7e-67 260.8 611 36.3
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 2.7e-67 260.8 646 36.1
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 3.3e-65 253.8 616 35.1
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 1.2e-64 251.9 607 36.9
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 3.6e-64 250.4 628 35.0
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 3.1e-63 247.3 276 55.4
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 3.1e-63 247.3 276 55.4
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 4.4e-62 243.4 627 33.7
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 4.9e-61 240.0 607 36.4
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 6.4e-61 239.6 613 34.9
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 1.6e-59 235.0 620 34.8
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 2.1e-59 234.6 612 35.8
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 3.5e-59 233.8 622 36.8
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 1.0e-58 232.3 574 32.6
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 6.6e-58 229.6 617 35.3
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 6.6e-58 229.6 612 35.5
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 1.1e-57 228.8 627 34.0
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 9.5e-57 225.7 610 34.1
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 3.6e-56 223.8 609 36.3
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 3.6e-56 223.8 631 35.0
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 6.2e-56 223.0 627 33.3
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 1.5e-54 218.4 433 40.4
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 2.9e-53 214.2 277 50.2
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 1.1e-52 212.2 467 37.7
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 1.2e-51 208.8 221 60.2
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 1.6e-51 208.4 221 60.2
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 5.1e-50 203.4 619 34.4
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 1.4e-44 185.3 633 32.5
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 1.3e-42 178.7 298 42.6
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 3.3e-41 174.1 229 42.8
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 3.6e-40 170.6 180 66.1
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.3e-37 162.2 232 45.7
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 6.4e-37 159.8 249 40.2
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 1.1e-36 159.1 604 27.6
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 7.8e-35 152.9 269 39.4
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.3e-34 151.4 614 30.1
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 1.4e-31 142.1 261 35.2
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 9.9e-30 136.0 521 28.0
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 7.1e-28 129.8 560 30.2
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.1e-27 128.3 216 40.3
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 2.4e-23 114.8 219 44.3
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 4.0e-23 114.0 198 44.9
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 1.2e-22 112.5 82 73.2
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 9.9e-22 109.4 190 37.4
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 6.4e-21 106.7 497 24.9
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 6.4e-21 106.7 278 34.9
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 6.4e-21 106.7 196 37.2
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 8.7e-18 96.3 109 53.2
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 2.1e-16 91.7 340 30.3
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.7e-16 90.9 183 33.3
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 3.7e-16 90.9 379 28.0
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.1e-15 89.4 93 55.9
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 2.0e-14 85.1 91 49.5
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 4.9e-13 80.5 76 63.2
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 6.5e-13 80.1 98 50.0
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 2.5e-12 78.2 59 59.3
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 7.1e-12 76.6 102 48.0
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 3.5e-11 74.3 114 37.7
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 4.6e-11 73.9 56 64.3
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 4.6e-11 73.9 56 64.3
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.3e-10 72.4 71 54.9
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 5.1e-10 70.5 175 34.9
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 1.1e-09 69.3 72 50.0
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 1.5e-09 68.9 90 44.4
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.9e-09 68.6 106 41.5
Gohir.D02G151450 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.6e-08 65.5 89 44.9
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 4.8e-08 63.9 62 46.8
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 4.8e-08 63.9 154 38.3
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 2.4e-07 61.6 62 45.2
Sp2g28160 Schrenkiella parvula HOM05D008017 ORTHO05D009829 6.9e-07 60.1 71 42.3
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 1.5e-06 58.9 77 37.7
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 4.5e-06 57.4 75 42.7
C03p61050 Brassica napus HOM05D008017 ORTHO05D009829 5.9e-06 57.0 53 49.1
BolC3t18367H Brassica oleracea HOM05D008017 ORTHO05D009829 5.9e-06 57.0 53 49.1


User provided reference genes

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