Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.5e-33 145.6 74 100.0
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 4.0e-26 120.9 74 81.1
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 6.9e-26 120.2 72 81.9
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 6.9e-26 120.2 73 80.8
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.2e-25 119.4 74 78.4
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 2.0e-25 118.6 74 78.4
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 2.0e-25 118.6 74 79.7
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 2.0e-25 118.6 72 80.6
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.6e-25 118.2 74 78.4
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 2.6e-25 118.2 74 78.4
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 2.6e-25 118.2 71 80.3
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 7.6e-25 116.7 74 77.0
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 9.9e-25 116.3 74 81.1
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 1.7e-24 115.5 72 79.2
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 2.2e-24 115.2 70 80.0
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 2.9e-24 114.8 74 75.7
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 2.9e-24 114.8 74 79.7
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 3.8e-24 114.4 74 77.0
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 3.8e-24 114.4 72 79.2
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 1.1e-23 112.8 75 76.0
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.1e-23 112.8 74 77.0
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.1e-23 112.8 71 81.7
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 1.4e-23 112.5 71 77.5
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 1.4e-23 112.5 71 78.9
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 1.9e-23 112.1 72 79.2
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 3.2e-23 111.3 74 74.3
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 4.2e-23 110.9 74 75.7
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 4.2e-23 110.9 75 73.3
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 5.4e-23 110.5 69 78.3
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 9.3e-23 109.8 76 72.4
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 9.3e-23 109.8 74 75.7
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.2e-22 109.4 72 73.6
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 1.2e-22 109.4 74 74.3
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 1.6e-22 109.0 73 75.3
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.6e-22 109.0 75 73.3
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 2.1e-22 108.6 76 71.1
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 2.1e-22 108.6 67 83.6
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 2.7e-22 108.2 71 76.1
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 3.5e-22 107.8 69 76.8
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 3.5e-22 107.8 71 73.2
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 3.5e-22 107.8 71 74.6
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 4.6e-22 107.5 73 74.0
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 4.6e-22 107.5 72 73.6
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 6.0e-22 107.1 69 76.8
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 6.0e-22 107.1 75 72.0
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 7.8e-22 106.7 69 75.4
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 1.0e-21 106.3 80 68.8
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.0e-21 106.3 71 74.6
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 1.3e-21 105.9 62 79.0
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 1.3e-21 105.9 65 78.5
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 1.3e-21 105.9 73 72.6
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.3e-21 105.9 66 77.3
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 1.3e-21 105.9 69 75.4
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 1.7e-21 105.5 62 79.0
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 1.7e-21 105.5 62 79.0
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 1.7e-21 105.5 73 72.6
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 1.7e-21 105.5 76 69.7
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 1.7e-21 105.5 75 70.7
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 1.7e-21 105.5 77 71.4
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 2.3e-21 105.1 70 71.4
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 3.0e-21 104.8 62 80.6
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 3.9e-21 104.4 71 73.2
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 5.1e-21 104.0 62 77.4
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 5.1e-21 104.0 71 73.2
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 6.6e-21 103.6 62 80.6
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 6.6e-21 103.6 79 68.4
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 8.7e-21 103.2 74 71.6
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 8.7e-21 103.2 80 67.5
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 1.1e-20 102.8 73 71.2
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 1.1e-20 102.8 69 75.4
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 1.1e-20 102.8 65 73.8
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 1.5e-20 102.4 64 78.1
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 1.9e-20 102.1 72 75.0
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 1.9e-20 102.1 61 77.0
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 1.9e-20 102.1 65 76.9
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.9e-20 102.1 72 70.8
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 2.5e-20 101.7 62 79.0
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 2.5e-20 101.7 62 79.0
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.5e-20 101.7 72 72.2
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 3.3e-20 101.3 66 77.3
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 3.3e-20 101.3 73 68.5
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 3.3e-20 101.3 70 70.0
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 5.6e-20 100.5 71 73.2
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 7.3e-20 100.1 66 74.2
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 9.6e-20 99.8 62 75.8
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 9.6e-20 99.8 62 75.8
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 9.6e-20 99.8 63 73.0
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 1.3e-19 99.4 59 83.1
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 1.3e-19 99.4 63 73.0
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 1.3e-19 99.4 63 73.0
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 1.3e-19 99.4 63 73.0
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.3e-19 99.4 73 67.1
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.3e-19 99.4 69 72.5
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 1.3e-19 99.4 63 73.0
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.1e-19 98.6 72 70.8
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 2.1e-19 98.6 63 71.4
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 2.1e-19 98.6 61 77.0
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 2.8e-19 98.2 62 75.8
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 2.8e-19 98.2 63 71.4
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 2.8e-19 98.2 72 69.4
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 3.6e-19 97.8 70 70.0
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 3.6e-19 97.8 58 79.3
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 4.8e-19 97.4 62 74.2
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 8.1e-19 96.7 58 79.3
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.1e-18 96.3 69 69.6
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 1.1e-18 96.3 72 66.7
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 1.1e-18 96.3 74 66.2
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 1.4e-18 95.9 69 69.6
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 1.4e-18 95.9 62 74.2
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 1.4e-18 95.9 68 70.6
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 1.4e-18 95.9 58 81.0
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 1.8e-18 95.5 67 67.2
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 1.8e-18 95.5 55 81.8
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 2.4e-18 95.1 71 66.2
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 2.4e-18 95.1 58 75.9
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.4e-18 95.1 61 70.5
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 3.1e-18 94.7 65 69.2
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 3.1e-18 94.7 69 68.1
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 3.1e-18 94.7 69 68.1
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 3.1e-18 94.7 69 68.1
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 4.0e-18 94.4 68 69.1
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 4.0e-18 94.4 69 68.1
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 5.3e-18 94.0 67 68.7
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 6.9e-18 93.6 62 72.6
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 6.9e-18 93.6 58 74.1
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 6.9e-18 93.6 69 68.1
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 1.5e-17 92.4 67 67.2
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.6e-17 91.7 69 66.7
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 3.4e-17 91.3 67 65.7
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 4.5e-17 90.9 72 65.3
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 7.6e-17 90.1 72 62.5
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 1.3e-16 89.4 56 76.8
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 1.7e-16 89.0 54 77.8
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 2.9e-16 88.2 57 73.7
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 7.9e-14 80.1 55 67.3
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 2.3e-13 78.6 61 67.2
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 3.9e-13 77.8 69 60.9
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 3.9e-13 77.8 70 51.4
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 6.7e-13 77.0 58 63.8
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 6.7e-13 77.0 58 63.8
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 8.7e-13 76.6 61 59.0
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 8.7e-13 76.6 68 63.2
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 8.7e-13 76.6 68 63.2
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 1.1e-12 76.3 58 62.1
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.1e-12 76.3 59 69.5
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 2.5e-12 75.1 40 87.5
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 2.5e-12 75.1 55 63.6
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 2.5e-12 75.1 61 63.9
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 9.6e-12 73.2 63 57.1
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 9.6e-12 73.2 63 57.1
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 3.7e-11 71.2 51 72.5
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 6.2e-11 70.5 65 52.3
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 1.4e-10 69.3 61 52.5
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 2.0e-09 65.5 54 64.8
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 1.9e-07 58.9 33 75.8
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 2.5e-07 58.5 57 49.1
Glyma.03G125300 Glycine max HOM05D004624 ORTHO05D005357 2.1e-06 55.5 37 75.7


User provided reference genes

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