Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.5e-245 852.4 439 100.0
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 6.5e-233 810.4 418 100.0
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.3e-200 701.4 418 86.1
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.0e-198 694.9 418 84.4
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 1.4e-195 686.4 418 83.7
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 1.5e-192 676.4 418 83.3
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 9.5e-192 673.7 418 81.1
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 1.5e-189 666.4 418 79.7
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 2.9e-188 662.1 418 79.2
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 2.7e-186 655.6 419 79.0
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 2.3e-185 652.5 419 78.5
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 5.1e-185 651.4 418 78.9
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 9.6e-184 647.1 418 78.2
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.2e-183 646.7 433 75.5
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 2.1e-183 646.0 427 76.3
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.6e-183 645.2 418 80.1
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 2.0e-181 639.4 416 76.7
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.7e-180 636.3 392 81.1
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 7.1e-179 630.9 418 75.8
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 1.2e-178 630.2 418 77.8
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 6.0e-178 627.9 418 77.3
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.0e-177 627.1 418 77.3
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 3.0e-177 625.5 418 76.8
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.0e-177 625.5 416 76.2
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 5.1e-177 624.8 416 75.7
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 1.5e-176 623.2 416 74.8
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 9.6e-176 620.5 419 76.1
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 9.6e-176 620.5 419 76.1
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 1.3e-175 620.2 416 75.5
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 1.3e-175 620.2 416 75.7
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 1.3e-175 620.2 441 73.0
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.6e-175 619.8 416 72.6
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 6.2e-175 617.8 416 76.0
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.4e-174 616.7 416 76.2
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 2.0e-173 612.8 430 71.4
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 5.8e-173 611.3 416 73.8
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 7.6e-173 610.9 419 72.8
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 9.9e-173 610.5 420 75.7
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.4e-171 606.7 416 74.3
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 9.3e-171 604.0 416 73.3
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 7.9e-170 600.9 416 73.1
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.8e-169 599.7 419 73.5
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 2.1e-167 592.8 421 71.3
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 2.1e-167 592.8 416 72.1
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 6.2e-167 591.3 418 73.4
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 6.2e-167 591.3 418 71.5
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 8.1e-167 590.9 418 73.7
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 1.4e-166 590.1 416 72.6
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 2.4e-166 589.3 418 72.7
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 4.0e-166 588.6 416 72.6
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 5.3e-166 588.2 416 72.6
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 6.9e-166 587.8 416 73.3
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 6.9e-166 587.8 418 71.8
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 2.0e-165 586.3 406 72.7
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 3.4e-165 585.5 416 69.7
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 4.5e-165 585.1 418 71.8
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 3.8e-164 582.0 417 69.8
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 4.9e-164 581.6 416 71.4
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 1.4e-163 580.1 446 69.3
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.4e-163 580.1 418 72.0
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 1.4e-163 580.1 418 72.0
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.9e-163 579.7 460 67.4
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 2.5e-163 579.3 446 69.3
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 2.5e-163 579.3 418 71.1
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 5.5e-163 578.2 418 70.8
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 5.5e-163 578.2 418 72.0
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.1e-162 576.2 417 69.3
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 2.1e-162 576.2 366 79.2
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 2.7e-162 575.9 435 69.9
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 3.5e-162 575.5 418 70.8
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 7.9e-162 574.3 417 68.8
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 6.7e-161 571.2 420 69.3
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 1.5e-160 570.1 420 69.3
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 1.9e-160 569.7 420 68.8
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 1.9e-160 569.7 420 68.8
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 5.6e-160 568.2 419 69.0
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 9.6e-160 567.4 419 69.2
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 1.3e-159 567.0 420 68.6
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.3e-159 567.0 417 68.3
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.6e-159 566.6 418 68.2
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 3.7e-159 565.5 420 68.8
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 6.2e-159 564.7 420 68.1
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 6.2e-159 564.7 420 68.1
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 2.4e-158 562.8 420 68.1
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 2.4e-158 562.8 426 67.6
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 6.9e-158 561.2 418 69.4
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 1.2e-157 560.5 368 74.7
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 1.2e-157 560.5 406 70.4
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 2.0e-157 559.7 420 68.3
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 3.4e-157 558.9 360 77.2
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 5.8e-157 558.1 421 68.6
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 5.8e-157 558.1 421 68.9
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.2e-156 556.2 418 67.5
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 6.5e-156 554.7 421 67.9
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 6.5e-156 554.7 381 72.4
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.9e-155 553.1 440 67.0
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 3.2e-155 552.4 447 64.0
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 5.5e-155 551.6 421 67.2
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 7.1e-155 551.2 420 67.6
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 9.3e-155 550.8 420 67.6
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.2e-154 550.4 453 64.5
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 2.1e-154 549.7 421 67.5
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.0e-153 547.4 422 67.5
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.3e-153 546.2 438 64.4
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 5.1e-153 545.0 421 67.2
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 3.3e-152 542.3 416 67.8
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 8.2e-151 537.7 441 64.4
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 5.0e-148 528.5 359 73.0
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 1.9e-147 526.6 363 74.1
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 6.1e-146 521.5 404 62.9
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 2.4e-142 509.6 420 62.6
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 5.5e-139 498.4 372 69.1
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 1.0e-137 494.2 418 60.8
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 3.1e-134 482.6 418 58.9
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 5.3e-134 481.9 418 59.1
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.2e-133 480.7 351 70.1
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 2.9e-132 476.1 408 60.0
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 1.2e-125 454.1 419 57.0
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.2e-123 446.0 317 73.5
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 7.2e-123 444.9 419 54.7
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 1.8e-121 440.3 418 53.8
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 2.0e-120 436.8 318 72.3
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 3.7e-119 432.6 362 59.9
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.2e-117 427.6 415 57.6
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 1.2e-117 427.6 419 51.8
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 7.7e-117 424.9 419 51.3
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 6.8e-113 411.8 417 50.6
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 9.8e-112 407.9 246 80.9
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.4e-110 404.1 408 59.1
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.5e-101 372.5 418 49.8
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.0e-97 359.4 365 54.8
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 2.4e-94 350.1 307 60.3
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 3.4e-88 329.7 226 72.1
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 6.0e-85 318.9 236 72.0
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 6.2e-82 308.9 314 51.6
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 2.7e-77 293.5 311 54.7
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 1.4e-62 244.6 162 74.1
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.6e-61 241.1 158 76.6
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 1.6e-61 241.1 178 68.5
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.0e-60 238.4 192 67.2
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 5.8e-56 222.6 195 59.5
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.3e-44 184.1 121 75.2
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 5.1e-44 183.0 104 81.7
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 2.5e-43 180.6 122 73.0
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.1e-42 177.6 135 70.4
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 5.0e-39 166.4 120 70.8
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.0e-36 157.1 118 69.5
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.8e-33 147.9 94 75.5
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 6.1e-29 132.9 118 61.9
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.4e-25 120.9 99 56.6
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 2.1e-21 107.8 81 65.4
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 2.9e-15 87.4 63 71.4
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 1.9e-14 84.7 60 70.0
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 3.0e-12 77.4 64 65.6
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 8.2e-10 69.3 42 76.2
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 2.7e-08 64.3 39 79.5
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 7.7e-08 62.8 39 82.1


User provided reference genes

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