Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 1.0e-48 196.4 102 100.0
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 2.4e-21 105.5 108 56.5
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 3.5e-20 101.7 99 57.6
CSS0012629 Camellia sinensis var. sinensis HOM05D007861 ORTHO05D007271 1.0e-19 100.1 105 54.3
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 1.3e-19 99.8 96 58.3
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 3.8e-19 98.2 76 67.1
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 1.5e-18 96.3 76 64.5
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 4.3e-18 94.7 99 54.5
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 5.6e-18 94.4 105 52.4
Sabra10G0174600 Salix brachista HOM05D007861 ORTHO05D007271 2.8e-17 92.0 103 49.5
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 3.6e-17 91.7 101 53.5
Cfa001682 Carpinus fangiana HOM05D009695 ORTHO05D007271 1.2e-15 86.7 94 52.1
Haze_16853 Corylus avellana HOM05D009695 ORTHO05D007271 3.4e-15 85.1 91 53.8
QL08p054789 Quercus lobata HOM05D009695 ORTHO05D007271 7.5e-15 84.0 95 52.6
Thecc.09G347700 Theobroma cacao HOM05D007861 ORTHO05D007271 8.3e-14 80.5 93 50.5
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 1.8e-13 79.3 92 47.8
Manes.11G150200 Manihot esculenta HOM05D007861 ORTHO05D007271 2.4e-13 79.0 99 50.5
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 3.2e-13 78.6 60 58.3
FvH4_3g31180 Fragaria vesca HOM05D007861 ORTHO05D007271 3.2e-13 78.6 108 47.2
FAN11G3777 Fragaria x ananassa HOM05D007861 ORTHO05D007271 3.2e-13 78.6 108 47.2
FAN25G1997 Fragaria x ananassa HOM05D007861 ORTHO05D007271 3.2e-13 78.6 108 47.2
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 3.2e-13 78.6 107 51.4
CiPaw.02G172600 Carya illinoinensis HOM05D019773 ORTHO05D007271 4.1e-13 78.2 105 50.5
Migut.N02575 Erythranthe guttata HOM05D007861 ORTHO05D007271 4.1e-13 78.2 104 46.2
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 4.1e-13 78.2 100 50.0
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 7.0e-13 77.4 97 49.5
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 9.2e-13 77.0 108 48.1
DCAR_019088 Daucus carota HOM05D009695 ORTHO05D007271 1.2e-12 76.6 108 50.0
FAN16G3504 Fragaria x ananassa HOM05D007861 ORTHO05D007271 1.6e-12 76.3 108 48.1
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 2.0e-12 75.9 91 49.5
Hma1.2p1_0344F.1_g131140 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 2.0e-12 75.9 74 59.5
RcHm_v2.0_Chr5g0057831 Rosa chinensis HOM05D007861 ORTHO05D007271 2.0e-12 75.9 108 47.2
CiPaw.01G269700 Carya illinoinensis HOM05D007861 ORTHO05D007271 2.7e-12 75.5 106 50.0
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 3.5e-12 75.1 98 50.0
Gorai.009G311600 Gossypium raimondii HOM05D009695 ORTHO05D007271 4.6e-12 74.7 107 48.6
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 6.0e-12 74.3 101 48.5
Gohir.A05G294400 Gossypium hirsutum HOM05D009695 ORTHO05D007271 1.0e-11 73.6 107 48.6
TPR.G10289 Trifolium pratense HOM05D007861 ORTHO05D007271 1.0e-11 73.6 88 47.7
Gohir.D05G294900 Gossypium hirsutum HOM05D009695 ORTHO05D007271 1.3e-11 73.2 107 47.7
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 1.3e-11 73.2 66 57.6
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 2.3e-11 72.4 99 52.5
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 3.0e-11 72.0 100 47.0
Medtr1g094250 Medicago truncatula HOM05D007861 ORTHO05D007271 3.0e-11 72.0 91 46.2
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 3.9e-11 71.6 90 50.0
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 5.0e-11 71.2 91 52.7
Phvul.007G098200 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 6.6e-11 70.9 92 48.9
TAR623G0050 Trochodendron aralioides HOM05D007861 ORTHO05D007271 6.6e-11 70.9 85 54.1
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 8.6e-11 70.5 101 45.5
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 1.1e-10 70.1 87 46.0
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 1.1e-10 70.1 100 49.0
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.1e-10 70.1 95 48.4
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.1e-10 70.1 101 45.5
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 1.1e-10 70.1 95 48.4
Migut.F01962 Erythranthe guttata HOM05D007861 ORTHO05D007271 1.5e-10 69.7 79 51.9
Lalb_Chr14g0374511 Lupinus albus HOM05D007861 ORTHO05D007271 1.5e-10 69.7 100 45.0
Ciclev10029681m.g Citrus clementina HOM05D007861 ORTHO05D007271 1.9e-10 69.3 89 52.8
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.9e-10 69.3 95 48.4
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 2.5e-10 68.9 99 45.5
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 3.3e-10 68.6 100 49.0
Glyma.20G182100 Glycine max HOM05D007861 ORTHO05D007271 3.3e-10 68.6 100 48.0
Lalb_Chr03g0027611 Lupinus albus HOM05D007861 ORTHO05D007271 3.3e-10 68.6 99 47.5
Lsat_1_v5_gn_8_20640 Lactuca sativa HOM05D007861 ORTHO05D007271 4.3e-10 68.2 93 47.3
Manes.10G049800 Manihot esculenta HOM05D009695 ORTHO05D007271 4.3e-10 68.2 92 50.0
Rhsim03G0116500 Rhododendron simsii HOM05D009695 ORTHO05D007271 4.3e-10 68.2 95 42.1
Glyma.13G323700 Glycine max HOM05D007861 ORTHO05D007271 5.6e-10 67.8 101 52.5
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 5.6e-10 67.8 100 50.0
PGSC0003DMG400019683 Solanum tuberosum HOM05D007861 ORTHO05D007271 5.6e-10 67.8 56 55.4
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 7.3e-10 67.4 106 48.1
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 9.5e-10 67.0 96 44.8
Ciclev10033954m.g Citrus clementina HOM05D007861 ORTHO05D007271 1.2e-09 66.6 91 46.2
Lalb_Chr01g0004491 Lupinus albus HOM05D007861 ORTHO05D007271 1.2e-09 66.6 100 45.0
COL.COLO4_10198 Corchorus olitorius HOM05D009695 ORTHO05D007271 1.6e-09 66.2 74 51.4
Medtr4g057830 Medicago truncatula HOM05D007861 ORTHO05D007271 1.6e-09 66.2 76 52.6
Eucgr.J00896 Eucalyptus grandis HOM05D007861 ORTHO05D007271 2.1e-09 65.9 80 45.0
Gohir.A08G200000 Gossypium hirsutum HOM05D007861 ORTHO05D007271 2.1e-09 65.9 108 42.6
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 2.1e-09 65.9 100 48.0
COL.COLO4_34705 Corchorus olitorius HOM05D007861 ORTHO05D007271 2.8e-09 65.5 101 45.5
Thecc.10G081700 Theobroma cacao HOM05D009695 ORTHO05D007271 2.8e-09 65.5 74 48.6
Psat6g181720 Pisum sativum HOM05D007861 ORTHO05D007271 3.6e-09 65.1 73 49.3
Prupe.2G209700 Prunus persica HOM05D019773 ORTHO05D007271 3.6e-09 65.1 106 41.5
TPR.G6167 Trifolium pratense HOM05D007861 ORTHO05D007271 3.6e-09 65.1 107 44.9
Manes.04G015900 Manihot esculenta HOM05D007861 ORTHO05D007271 4.7e-09 64.7 103 47.6
Cc02_g11000 Coffea canephora HOM05D009695 ORTHO05D007271 1.4e-08 63.2 105 44.8
Solyc11g069730.1 Solanum lycopersicum HOM05D007861 ORTHO05D007271 1.4e-08 63.2 76 44.7
Medtr2g095310 Medicago truncatula HOM05D007861 ORTHO05D007271 2.3e-08 62.4 101 46.5
Sabra04G0145100 Salix brachista HOM05D007861 ORTHO05D007271 2.3e-08 62.4 77 50.6
TPR.G11489 Trifolium pratense HOM05D007861 ORTHO05D007271 4.0e-08 61.6 100 48.0
Eucgr.G02861 Eucalyptus grandis HOM05D007861 ORTHO05D007271 5.2e-08 61.2 100 41.0
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 1.2e-07 60.1 68 50.0
Sed0005749 Sechium edule HOM05D007861 ORTHO05D007271 1.2e-07 60.1 97 45.4
Sopen06g031390 Solanum pennellii HOM05D039995 ORTHO05D007271 1.2e-07 60.1 76 46.1
DCAR_018786 Daucus carota HOM05D007861 ORTHO05D007271 1.5e-07 59.7 75 45.3
Glyma.10G208600 Glycine max HOM05D007861 ORTHO05D007271 1.5e-07 59.7 104 43.3
MBI18_g25264_MAGBIO Magnolia biondii HOM05D022601 ORTHO05D023448 1.5e-07 59.7 100 44.0
Potri.004G213900 Populus trichocarpa HOM05D007861 ORTHO05D007271 2.6e-07 58.9 84 47.6
Potri.009G008300 Populus trichocarpa HOM05D007861 ORTHO05D007271 2.6e-07 58.9 81 49.4
Lj5g0009165 Lotus japonicus HOM05D007861 ORTHO05D007271 5.8e-07 57.8 98 44.9
Lsat_1_v5_gn_6_43600 Lactuca sativa HOM05D007861 ORTHO05D007271 7.5e-07 57.4 67 47.8
Cpa.g.sc53.122 Carica papaya HOM05D009695 ORTHO05D007271 2.2e-06 55.8 90 40.0
EL10Ac9g21645 Beta vulgaris HOM05D009695 ORTHO05D007271 2.9e-06 55.5 94 38.3
PGSC0003DMG400007440 Solanum tuberosum HOM05D009695 ORTHO05D007271 2.9e-06 55.5 77 45.5
Atru.chr12.833 Acer truncatum HOM05D009695 ORTHO05D007271 6.4e-06 54.3 73 45.2
Lalb_Chr02g0152111 Lupinus albus HOM05D007861 ORTHO05D007271 6.4e-06 54.3 71 49.3
RcHm_v2.0_Chr1g0362761 Rosa chinensis HOM05D019773 ORTHO05D007271 8.3e-06 53.9 96 42.7


User provided reference genes

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