Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 6.8e-190 667.2 335 100.0
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 2.6e-149 532.3 307 79.5
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.6e-143 513.1 307 76.9
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 1.1e-139 500.4 302 76.2
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 2.5e-139 499.2 305 74.4
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 4.2e-139 498.4 307 74.6
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 4.2e-139 498.4 307 74.3
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 4.2e-139 498.4 254 91.7
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 5.5e-139 498.0 304 74.0
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 7.2e-139 497.7 304 76.6
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.2e-138 496.9 307 75.2
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 1.6e-138 496.5 305 75.7
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 3.6e-138 495.4 303 74.9
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 1.8e-137 493.0 303 75.6
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 3.0e-137 492.3 307 73.0
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 3.9e-137 491.9 307 73.6
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 5.1e-137 491.5 302 75.2
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 6.7e-137 491.1 302 75.5
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 1.5e-136 490.0 304 74.0
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.9e-136 489.6 307 72.3
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 2.5e-136 489.2 307 73.3
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 7.4e-136 487.6 306 71.9
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 9.7e-136 487.3 303 73.6
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 1.3e-135 486.9 304 73.7
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 1.6e-135 486.5 300 75.3
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 2.2e-135 486.1 306 72.2
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 3.7e-135 485.3 303 73.3
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 3.7e-135 485.3 307 71.7
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 6.3e-135 484.6 307 72.3
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 6.3e-135 484.6 300 74.7
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 2.4e-134 482.6 306 72.2
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 3.1e-134 482.3 307 71.7
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 6.9e-134 481.1 304 71.1
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 6.9e-134 481.1 302 73.5
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 6.9e-134 481.1 302 73.5
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 2.6e-133 479.2 299 72.2
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 3.4e-133 478.8 298 75.2
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 4.5e-133 478.4 308 71.1
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 4.5e-133 478.4 302 72.2
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 5.9e-133 478.0 304 73.7
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 5.9e-133 478.0 307 71.0
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 5.9e-133 478.0 304 71.1
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 2.2e-132 476.1 304 70.1
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 5.0e-132 474.9 302 71.2
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 6.5e-132 474.6 304 70.4
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 8.5e-132 474.2 301 71.1
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 1.1e-131 473.8 302 70.2
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 1.9e-131 473.0 302 71.2
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.6e-130 469.9 301 71.4
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 2.1e-130 469.5 302 71.2
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 3.6e-130 468.8 300 72.3
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 6.1e-130 468.0 304 71.1
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 7.9e-130 467.6 307 69.7
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 2.3e-129 466.1 300 71.0
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 2.3e-129 466.1 307 70.4
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 3.9e-129 465.3 301 70.4
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 6.7e-129 464.5 307 68.7
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 6.7e-129 464.5 307 67.8
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 6.7e-129 464.5 303 70.6
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 6.7e-129 464.5 303 70.3
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 1.1e-128 463.8 307 69.1
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 2.0e-128 463.0 303 70.0
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 3.3e-128 462.2 300 71.0
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 4.4e-128 461.8 307 68.4
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 4.4e-128 461.8 307 68.4
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 5.7e-128 461.5 307 67.4
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 7.4e-128 461.1 307 68.4
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 7.4e-128 461.1 302 69.9
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 1.3e-127 460.3 328 67.4
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 1.3e-127 460.3 307 67.4
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 4.8e-127 458.4 304 67.1
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 6.3e-127 458.0 321 66.7
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 1.4e-126 456.8 307 67.4
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 6.9e-126 454.5 295 70.5
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 6.9e-126 454.5 303 70.0
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 9.1e-126 454.1 299 68.9
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 1.5e-125 453.4 299 68.6
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 1.0e-124 450.7 299 68.2
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 1.0e-124 450.7 303 68.3
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 3.8e-124 448.7 302 69.2
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.5e-124 448.0 303 70.0
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 6.5e-124 448.0 315 65.4
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 3.2e-123 445.7 303 69.6
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 5.5e-123 444.9 366 61.2
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.5e-123 444.9 303 69.3
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 1.8e-121 439.9 295 68.8
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 1.3e-119 433.7 305 66.9
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 3.1e-118 429.1 289 69.2
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 9.1e-118 427.6 274 71.9
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 9.1e-118 427.6 303 67.3
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 2.6e-117 426.0 307 67.8
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 7.7e-117 424.5 343 61.2
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 7.7e-117 424.5 294 65.0
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 3.6e-114 415.6 257 72.0
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.0e-113 414.1 262 72.5
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 2.6e-112 409.5 358 57.8
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 4.8e-111 405.2 262 71.0
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 6.3e-111 404.8 315 62.5
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.8e-110 403.3 287 66.9
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 1.2e-109 400.6 260 68.1
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 6.8e-105 384.8 229 75.1
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 1.6e-101 373.6 292 58.9
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 2.9e-100 369.4 307 59.3
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 1.1e-99 367.5 302 53.6
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 3.2e-99 365.9 289 59.2
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 1.2e-98 364.0 296 57.8
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 2.8e-98 362.8 308 54.9
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.3e-95 354.0 308 54.9
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 8.6e-92 341.3 218 69.7
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.4e-89 334.0 225 67.1
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.5e-88 330.5 225 66.7
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.2e-74 284.3 182 70.3
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.6e-72 276.6 183 68.9
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 7.1e-62 241.9 309 41.4
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.3e-60 237.7 176 65.3
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 1.1e-57 228.0 188 51.6
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 5.6e-51 205.7 283 41.0
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 4.5e-48 196.1 291 40.2
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 4.2e-46 189.5 443 29.1
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 3.7e-42 176.4 109 70.6
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 4.9e-39 166.0 157 53.5
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 3.1e-33 146.7 115 61.7
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.6e-29 134.4 89 70.8
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 6.7e-28 129.0 79 77.2
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 1.7e-23 114.4 249 36.5
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 3.2e-22 110.2 78 62.8
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 5.5e-22 109.4 110 48.2
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.3e-18 98.2 62 69.4
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 5.3e-09 66.2 42 64.3
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 7.7e-08 62.4 48 60.4


User provided reference genes

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