Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 6.9e-168 594.0 316 100.0
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 8.3e-113 411.0 316 71.2
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 4.7e-108 395.2 316 68.7
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 8.9e-107 391.0 316 67.4
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 4.6e-103 378.6 290 72.1
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.7e-102 376.7 312 67.6
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 3.9e-102 375.6 350 60.3
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 3.3e-101 372.5 312 66.7
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 7.6e-98 361.3 305 65.9
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 3.7e-97 359.0 339 60.5
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 4.1e-96 355.5 335 61.2
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 6.6e-94 348.2 343 58.3
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 4.3e-93 345.5 311 61.7
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 5.6e-93 345.1 311 62.1
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 7.3e-93 344.7 314 62.1
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.2e-92 344.0 311 61.7
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 1.4e-91 340.5 314 61.1
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 2.4e-91 339.7 308 61.7
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 3.4e-90 335.9 308 62.0
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 5.8e-90 335.1 309 59.9
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 1.3e-89 334.0 337 57.6
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 1.7e-89 333.6 330 58.8
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 2.9e-89 332.8 330 58.2
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 1.2e-87 327.4 315 59.7
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 3.5e-87 325.9 315 57.8
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 6.0e-87 325.1 315 59.0
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 1.7e-86 323.6 342 55.0
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 3.9e-86 322.4 316 58.9
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 5.1e-86 322.0 333 57.4
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 8.7e-86 321.2 313 59.7
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 1.9e-85 320.1 281 62.3
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 4.3e-85 318.9 313 56.9
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 7.3e-85 318.2 318 58.5
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 4.8e-84 315.5 312 59.6
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 4.8e-84 315.5 317 58.4
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 6.2e-84 315.1 314 57.3
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 8.1e-84 314.7 310 58.1
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 8.1e-84 314.7 316 57.9
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 1.1e-83 314.3 316 58.5
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.4e-83 313.9 314 57.0
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 2.4e-83 313.2 318 58.5
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 4.0e-83 312.4 312 56.1
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 5.8e-82 308.5 315 55.6
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 5.8e-82 308.5 305 57.4
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 1.7e-81 307.0 368 50.5
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.7e-81 307.0 315 56.8
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 2.2e-81 306.6 310 55.8
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 6.4e-81 305.1 310 57.1
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 1.1e-80 304.3 313 56.2
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 2.4e-80 303.1 315 56.5
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 4.2e-80 302.4 262 64.5
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 5.4e-80 302.0 315 55.6
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 2.7e-79 299.7 308 57.1
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 3.5e-79 299.3 314 55.7
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 6.0e-79 298.5 311 55.6
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 7.8e-79 298.1 316 55.7
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.0e-78 297.7 288 59.4
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 1.7e-78 297.0 315 56.2
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 3.0e-78 296.2 316 54.7
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 5.1e-78 295.4 313 53.4
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 5.1e-78 295.4 314 55.4
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 6.6e-78 295.0 315 54.6
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 6.6e-78 295.0 313 54.6
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 1.1e-77 294.3 313 55.0
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.1e-77 294.3 305 56.1
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 1.9e-77 293.5 334 51.8
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 5.6e-77 292.0 316 55.4
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 2.1e-76 290.0 338 51.8
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 1.8e-75 287.0 236 65.3
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 6.9e-75 285.0 292 59.6
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 2.0e-74 283.5 316 53.5
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.6e-74 283.1 286 55.9
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 4.5e-74 282.3 315 54.0
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 9.9e-74 281.2 305 53.8
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.7e-73 280.4 286 56.3
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 2.9e-73 279.6 315 54.6
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 4.9e-73 278.9 300 54.3
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 6.4e-73 278.5 314 51.6
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 2.4e-72 276.6 302 53.3
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 3.2e-72 276.2 294 54.1
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 5.4e-72 275.4 300 52.7
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 5.4e-72 275.4 308 52.9
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 3.5e-71 272.7 312 52.6
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 7.9e-71 271.6 314 51.6
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 1.3e-70 270.8 296 52.7
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 1.3e-70 270.8 316 49.7
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 1.1e-69 267.7 230 59.6
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 9.6e-69 264.6 300 51.3
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 1.6e-68 263.8 355 49.3
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 1.4e-67 260.8 313 50.5
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 4.0e-67 259.2 300 49.3
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 5.3e-67 258.8 354 47.2
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 6.9e-67 258.5 327 48.9
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 1.5e-66 257.3 301 51.5
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 4.9e-65 252.3 258 54.3
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 1.9e-64 250.4 294 49.7
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.5e-64 250.0 235 57.4
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 4.2e-64 249.2 312 48.7
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 2.1e-63 246.9 291 49.8
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 1.8e-62 243.8 316 47.8
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 6.7e-62 241.9 316 45.3
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 6.7e-62 241.9 322 46.6
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.1e-61 241.1 259 52.5
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 1.1e-61 241.1 293 49.8
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.9e-61 240.4 242 56.6
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 5.7e-61 238.8 241 56.4
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 2.1e-60 236.9 317 44.5
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 3.7e-60 236.1 315 45.1
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 3.7e-60 236.1 272 49.6
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 8.2e-60 235.0 300 47.3
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 1.1e-59 234.6 226 59.3
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 5.8e-58 228.8 312 42.6
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 3.8e-57 226.1 315 44.1
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 3.8e-57 226.1 315 41.6
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 6.5e-57 225.3 312 41.7
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 8.4e-57 224.9 315 41.9
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 1.1e-56 224.6 312 41.7
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.4e-56 224.2 286 49.7
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 2.5e-56 223.4 316 43.4
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 3.3e-53 213.0 313 40.9
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 4.3e-53 212.6 313 40.9
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 2.8e-52 209.9 196 57.1
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 6.9e-51 205.3 308 40.9
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 7.7e-50 201.8 288 43.8
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 3.2e-48 196.4 254 48.0
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 2.7e-47 193.4 311 42.4
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 1.1e-45 188.0 325 39.1
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.3e-44 184.5 288 41.0
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 3.7e-44 183.0 297 39.4
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 7.7e-42 175.3 311 37.9
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 2.9e-41 173.3 235 48.5
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.4e-40 171.0 137 62.0
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 8.2e-36 155.2 238 37.4
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 1.4e-35 154.5 228 41.2
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 7.2e-32 142.1 192 47.4
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 2.7e-31 140.2 271 34.3
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 1.3e-28 131.3 158 41.8
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 1.3e-25 121.3 150 48.0
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 8.0e-23 112.1 186 37.1
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 1.0e-22 111.7 205 34.1
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 1.8e-22 110.9 133 44.4
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 3.7e-20 103.2 251 31.9
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 8.3e-20 102.1 242 32.2
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 2.2e-17 94.0 200 32.5
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 2.5e-16 90.5 65 67.7
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 9.4e-16 88.6 97 57.7
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 3.0e-14 83.6 197 31.5
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 5.2e-14 82.8 121 38.8
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 6.8e-14 82.4 83 56.6
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 2.2e-12 77.4 111 33.3
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.4e-11 74.7 157 29.9
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 3.8e-09 66.6 98 44.9


User provided reference genes

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