Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 6.7e-276 953.4 474 100.0
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 7.7e-264 913.3 474 95.8
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.2e-235 819.7 480 84.8
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 2.3e-228 795.4 459 84.5
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.5e-227 792.7 469 81.4
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 5.1e-223 777.7 455 83.1
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 5.1e-223 777.7 460 82.2
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 5.6e-222 774.2 455 82.0
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 7.3e-222 773.9 455 83.3
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 6.2e-221 770.8 455 82.9
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 1.8e-220 769.2 479 78.9
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 3.1e-220 768.5 463 80.8
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 4.0e-220 768.1 475 79.4
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.5e-219 766.1 474 77.8
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 3.4e-219 765.0 456 80.5
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 9.9e-219 763.5 474 78.3
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.9e-218 761.9 451 83.4
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 3.8e-218 761.5 465 78.9
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 8.4e-218 760.4 459 82.4
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 8.4e-218 760.4 459 82.4
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 3.2e-217 758.4 466 79.6
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 5.4e-217 757.7 466 79.8
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 3.9e-215 751.5 459 80.6
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 3.3e-214 748.4 462 79.2
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 2.4e-212 742.3 474 78.1
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 2.0e-211 739.2 459 78.2
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 2.0e-211 739.2 459 77.8
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 5.8e-211 737.6 441 80.7
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 5.8e-211 737.6 456 78.7
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.3e-210 736.5 451 78.3
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 1.7e-210 736.1 459 77.1
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 2.2e-210 735.7 451 78.5
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 2.9e-210 735.3 463 77.5
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 6.4e-210 734.2 451 79.2
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 8.4e-210 733.8 478 75.7
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 8.4e-210 733.8 463 77.5
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 1.1e-209 733.4 451 77.8
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.4e-209 733.0 476 75.6
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 1.4e-209 733.0 452 77.4
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.4e-209 733.0 443 77.9
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 1.4e-209 733.0 463 77.3
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.4e-209 733.0 477 75.5
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 2.4e-209 732.3 451 78.0
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 4.2e-209 731.5 451 77.8
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.6e-208 729.6 442 77.8
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 6.0e-208 727.6 467 75.4
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 2.3e-207 725.7 438 79.7
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 3.9e-207 724.9 427 82.2
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 5.1e-207 724.5 426 82.4
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 8.7e-207 723.8 442 78.1
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.9e-206 722.6 476 74.8
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 1.9e-206 722.6 456 77.6
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 2.5e-206 722.2 453 76.2
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 4.3e-206 721.5 462 75.1
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 5.6e-206 721.1 444 77.7
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 7.4e-206 720.7 443 77.7
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 1.6e-205 719.5 445 76.6
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 8.1e-205 717.2 455 75.8
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 1.1e-204 716.8 449 76.6
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 1.1e-204 716.8 434 79.7
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 2.4e-204 715.7 444 76.8
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.4e-204 715.7 450 76.9
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.4e-204 715.7 450 76.9
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 3.1e-204 715.3 449 76.2
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 5.3e-204 714.5 450 76.7
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 6.9e-204 714.1 443 77.4
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 1.2e-203 713.4 443 77.4
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 5.8e-203 711.1 462 76.2
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 1.3e-202 709.9 429 80.0
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.7e-202 709.5 450 76.0
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.7e-202 709.5 450 76.0
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 2.2e-202 709.1 463 75.4
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 2.9e-202 708.8 478 73.2
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 4.9e-202 708.0 450 76.0
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 6.4e-202 707.6 462 75.8
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 6.4e-202 707.6 446 77.1
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 1.1e-201 706.8 426 78.6
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 1.9e-201 706.1 477 73.2
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 2.4e-201 705.7 448 75.9
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.2e-200 703.4 462 72.9
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 1.6e-200 703.0 430 78.4
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.6e-200 703.0 473 73.8
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 1.6e-200 703.0 444 75.5
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.5e-200 701.8 450 75.6
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 6.0e-200 701.0 456 74.1
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 6.0e-200 701.0 446 75.6
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 6.0e-200 701.0 439 77.2
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 7.9e-200 700.7 434 77.0
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 3.0e-199 698.7 430 77.9
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 5.1e-199 698.0 473 72.9
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 1.1e-198 696.8 460 73.5
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 1.5e-198 696.4 473 72.9
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 5.6e-198 694.5 425 78.6
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 5.6e-198 694.5 425 78.6
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 5.6e-198 694.5 434 76.5
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 5.6e-198 694.5 433 76.2
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 5.6e-198 694.5 446 74.9
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 2.8e-197 692.2 444 75.7
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 4.8e-197 691.4 434 77.9
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 9.0e-196 687.2 460 71.3
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 2.6e-195 685.6 433 75.8
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 5.8e-195 684.5 433 75.3
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 7.6e-195 684.1 431 76.3
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 1.0e-194 683.7 429 75.5
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 1.7e-194 682.9 424 76.9
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.7e-194 682.9 452 72.8
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 2.2e-194 682.6 435 76.3
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 1.1e-193 680.2 389 83.8
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 1.1e-193 680.2 462 72.1
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 5.5e-193 677.9 413 78.7
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 9.3e-193 677.2 455 72.3
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 1.2e-192 676.8 458 71.8
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 2.1e-192 676.0 439 74.0
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 2.7e-192 675.6 458 71.2
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 6.0e-192 674.5 440 73.9
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 1.0e-191 673.7 452 73.0
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 1.0e-191 673.7 459 72.1
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 1.3e-191 673.3 460 72.2
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 6.7e-191 671.0 459 71.0
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.1e-190 670.2 409 77.5
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 7.4e-190 667.5 455 72.1
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.6e-189 666.4 458 71.0
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 3.7e-189 665.2 442 74.0
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 1.8e-188 662.9 452 72.8
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 1.8e-188 662.9 423 75.2
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.1e-188 662.1 473 70.6
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 4.1e-188 661.8 444 73.6
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 4.1e-188 661.8 445 72.1
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 1.2e-187 660.2 454 69.2
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 1.2e-187 660.2 445 71.7
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.5e-187 659.8 445 71.7
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 2.6e-187 659.1 411 77.4
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.0e-186 657.1 459 68.4
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 3.8e-186 655.2 411 76.9
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 3.8e-186 655.2 458 69.9
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 6.7e-183 644.4 386 81.9
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 2.8e-181 639.0 388 79.1
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 2.0e-179 632.9 466 64.8
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.1e-177 627.1 364 80.2
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 1.2e-176 623.6 385 78.2
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 2.7e-176 622.5 458 66.8
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 3.6e-176 622.1 388 76.0
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 2.5e-169 599.4 454 67.6
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 2.6e-166 589.3 386 74.1
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 5.2e-159 565.1 473 63.4
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.7e-155 552.7 439 62.9
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.4e-150 535.8 438 61.0
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 4.2e-145 518.8 432 60.4
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.1e-140 504.2 474 57.2
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 4.0e-135 485.7 423 57.0
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 1.7e-122 443.7 306 69.6
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 2.5e-121 439.9 287 73.9
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 3.1e-111 406.4 239 79.9
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 6.4e-109 398.7 455 47.0
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.9e-106 389.4 273 68.9
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 6.4e-101 372.1 436 45.9
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 6.0e-99 365.5 430 44.7
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 3.9e-98 362.8 230 75.2
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 6.0e-91 339.0 382 46.1
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.7e-77 294.3 280 58.2
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 4.8e-72 276.2 161 81.4
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 9.1e-55 218.8 168 66.7
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.1e-47 193.7 113 81.4
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.1e-47 193.4 126 73.8
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 3.8e-45 186.8 443 31.4
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.3e-41 173.7 95 83.2
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 5.9e-38 162.9 451 29.7
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 1.2e-25 122.1 75 77.3
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 2.8e-24 117.5 110 54.5
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 2.9e-16 90.9 60 70.0
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 7.3e-12 76.3 79 53.2
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 3.7e-08 63.9 43 69.8
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 8.3e-08 62.8 43 67.4
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.9e-07 61.6 196 28.1
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.6e-06 58.5 107 27.1
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 3.5e-06 57.4 198 26.8
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 7.8e-06 56.2 196 23.5


User provided reference genes

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