Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.3e-179 632.9 310 100.0
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.7e-155 552.7 311 87.1
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 4.3e-154 548.1 311 86.8
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.9e-141 506.1 286 87.1
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 3.2e-141 505.4 328 77.1
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 9.2e-141 503.8 315 80.0
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 1.1e-138 496.9 312 80.1
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 1.5e-138 496.5 322 78.0
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 5.6e-138 494.6 325 76.3
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 7.3e-138 494.2 349 72.8
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 1.2e-137 493.4 327 74.3
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 2.8e-137 492.3 329 74.5
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 8.9e-136 487.3 322 77.3
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 7.6e-135 484.2 329 73.3
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 7.6e-135 484.2 329 73.3
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 9.9e-135 483.8 326 74.8
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.7e-134 483.0 326 74.8
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 2.2e-134 482.6 324 75.0
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.2e-134 482.6 310 76.5
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 3.8e-134 481.9 336 74.4
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 1.1e-133 480.3 334 71.6
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.4e-133 479.9 340 72.6
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 5.4e-133 478.0 338 74.0
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 1.2e-132 476.9 335 74.3
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 1.2e-132 476.9 340 72.6
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 2.7e-132 475.7 328 72.6
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 2.3e-131 472.6 327 71.9
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 1.5e-130 469.9 311 74.9
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 1.9e-130 469.5 314 74.2
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 9.6e-130 467.2 387 64.3
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 3.6e-129 465.3 323 72.8
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 3.6e-129 465.3 327 69.7
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 4.8e-129 464.9 323 72.4
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 8.1e-129 464.2 340 70.3
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 1.4e-128 463.4 331 72.8
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.4e-128 463.4 333 72.1
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 4.0e-128 461.8 333 71.8
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 9.0e-128 460.7 386 64.0
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 1.2e-127 460.3 327 70.0
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.2e-127 460.3 320 71.2
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 2.0e-127 459.5 324 71.9
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 9.9e-127 457.2 334 70.7
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 1.3e-126 456.8 390 62.1
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 4.9e-126 454.9 323 71.5
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 1.4e-125 453.4 392 63.3
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.9e-125 453.0 315 71.4
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.2e-124 450.3 314 72.3
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 7.9e-124 447.6 339 67.0
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 1.0e-123 447.2 337 68.8
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 1.3e-123 446.8 315 74.3
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 1.8e-123 446.4 310 73.5
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 3.0e-123 445.7 330 70.3
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 8.7e-123 444.1 329 67.5
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 7.4e-122 441.0 327 67.6
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 1.3e-121 440.3 327 67.3
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 1.3e-121 440.3 331 68.0
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 2.8e-121 439.1 347 65.1
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 2.8e-121 439.1 334 67.7
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 4.8e-121 438.3 331 68.0
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 8.1e-121 437.6 298 71.5
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.1e-120 435.6 330 67.9
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 3.1e-120 435.6 298 71.1
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 1.2e-119 433.7 383 62.1
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 1.5e-119 433.3 384 61.2
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 2.0e-119 433.0 376 62.8
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 3.4e-119 432.2 353 65.2
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 4.5e-119 431.8 298 70.8
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 3.8e-118 428.7 361 62.9
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 6.4e-118 427.9 350 65.7
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 6.4e-118 427.9 381 61.4
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 1.4e-117 426.8 333 65.2
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.9e-117 426.4 388 59.3
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 3.2e-117 425.6 335 66.0
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 5.5e-117 424.9 335 66.3
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 5.5e-117 424.9 356 62.9
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 5.6e-114 414.8 328 65.9
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 6.2e-113 411.4 390 57.4
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 1.4e-112 410.2 338 61.8
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 2.6e-111 406.0 330 63.9
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 5.8e-111 404.8 285 69.1
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 7.1e-109 397.9 301 65.1
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 4.6e-108 395.2 334 59.9
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 1.8e-107 393.3 273 72.5
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 6.7e-107 391.3 377 56.8
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 2.5e-106 389.4 224 81.7
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 5.7e-106 388.3 338 63.0
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 1.1e-104 384.0 384 54.7
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 1.5e-103 380.2 308 63.3
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 2.2e-102 376.3 322 60.2
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 2.2e-102 376.3 319 59.6
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 9.3e-101 370.9 326 59.8
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 1.6e-100 370.2 214 80.4
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 2.1e-100 369.8 207 82.1
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 3.6e-100 369.0 321 59.2
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 1.5e-98 363.6 293 63.1
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 3.3e-98 362.5 361 54.6
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 6.3e-97 358.2 320 57.5
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 6.9e-96 354.8 318 56.3
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 1.5e-95 353.6 317 59.6
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.9e-94 349.4 340 55.9
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.2e-92 344.0 308 58.4
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 2.7e-92 342.8 325 54.2
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 2.3e-91 339.7 310 54.8
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 5.7e-90 335.1 293 59.7
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 7.7e-87 324.7 321 51.4
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 7.7e-87 324.7 321 51.4
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 2.9e-86 322.8 320 51.6
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 5.0e-86 322.0 321 51.1
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 5.0e-86 322.0 323 52.6
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 1.8e-83 313.5 321 50.5
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 2.3e-83 313.2 321 51.1
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 3.0e-83 312.8 320 50.0
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 8.8e-83 311.2 321 51.1
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 2.6e-82 309.7 244 67.6
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 1.7e-81 307.0 174 83.3
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 3.7e-81 305.8 320 50.3
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 9.1e-72 274.6 160 79.4
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 9.1e-72 274.6 171 74.3
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 1.3e-70 270.8 159 78.6
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 5.0e-70 268.9 296 46.3
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.2e-63 247.7 153 77.1
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.1e-61 241.1 303 44.9
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 1.5e-61 240.7 313 43.5
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 7.2e-61 238.4 150 78.0
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 3.3e-53 213.0 172 66.9
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.5e-47 193.0 113 80.5
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.3e-43 180.3 118 73.7
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 6.6e-38 162.2 100 79.0
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 2.5e-37 160.2 319 36.4
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 3.1e-35 153.3 101 73.3
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.0e-30 138.3 80 80.0
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 7.6e-26 122.1 118 61.0
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.1e-24 118.2 121 59.5
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.3e-22 110.5 56 82.1
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 5.4e-16 89.4 92 53.3
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 3.5e-15 86.7 108 49.1
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 1.3e-14 84.7 66 60.6
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 6.6e-14 82.4 47 78.7
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 3.6e-12 76.6 55 72.7
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 1.5e-10 71.2 398 20.6


User provided reference genes

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